BlTCONS00062052 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062052
Unique NameBlTCONS00062052
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000049:1017969..1023950+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062052 ID=BlTCONS00062052|Name=BlTCONS00062052|organism=Branchiostoma lanceolatum|type=mRNA|length=5982bp|location=Sequence derived from alignment at Sc0000049:1017969..1023950+ (Branchiostoma lanceolatum)
GTACTTTTGATAAACTTCAAACAACGCGTAACATCGGAATTTCGGCATAG
GGTCGTCAACTCAAGTCGATATCATGACAACATCTGCTGTCCTTTGTTGT
CTTCAGCAAATGAAACCAAGTCTCCGGTCAAATTGTATTTGTCCTACGCC
CCACGTGCCTGCTGGAATCGCATATTTCAGACTGCTATAGTGTCACCTAG
GCAACCCCAACTCCACGGGACTTCATACCCGCTCACAAAACAGGGCCGCC
TGAAGAAAAAACACAGAGAGGAACTCTGAGAGATTTTTAGGTAAATAAGT
GGTGAAGGAAGAACTGCTAAGGGTGATTTTACGTCTCAAAGGAAGTCTGT
GTTTCTGAGGAGAGTTTAGGATGTCCATGTCGCCGTTTTGTGATGTCACA
ACATGGGAGGAGTTTAGCTACGGCCACTTCAGGTACGGTACACAGTGGGT
TCGGTCTGTGTTTCTGCAAAAAGTCGTCCGTGAAAACAGCGTATCTTTCT
TGTTTTGCTTAATTTTGCACTACAACTGTAACGATATGGTACTAGTACTA
AACCACGTTGTACTACTCTATACTGTTGTAAAATGAGCGGAATCAAAAGG
TGAGATTAAGTGCTATCATGGTTATTAGATGTCGTTTGTGATGCCTGTCA
TTCAAACAGGGATCCAGACCCTACCACTCCTGACGAGGGGCGTACTGGTT
GCTGTGCAAGGGGTAGGACGGAAAAGGAACAGGAGATTTGGAGTTTCTCC
AGTAAACCTCTCGGCAAAGCCCTGCTGCGGACCGTGGCTGCCGACAGACA
GTTGTGTCAGGATGCCGTCACCATGTTCACGGACATTCTCCTCTACTCCG
CCAGGAAGTCTCTGAAGGACGTGTCCGAAGATACTCGACTGGTGGAACAT
ATCTTCAGACAGGTTATAAAACGGGTATGGATATATGCATGTCGTCCCCT
GTCGCACCAATAACCTCCTTGGTCATCACACAGTACACATAGTCGACCGT
GGCCTCCCGACCTTCCCCAGACAATGCTTTGGAGTAAGTCGGCGCAAGGC
CATCTGTTGTTGGAAGTTGATCGGCCAGGTTGCCAGCCTATTCAATTGTA
AATTTTGACAAATCAAAGTTGTTTGTGGTTGGGAGTCTATCTGCGAGGCT
CGGCCTACGAGTCTTTATAAGTCGTCTGCGCCAGCCGACTAGAATAGGAT
GGATTTCAGGCTACTCCCAACCCATTTCCGACTTTGGTTGGGGAGTGGTT
GTGACCGTGGCTTTCATACTCATTCCACAGCTTTTATTCCTTCCAATCAA
GAGCCTCTCTTCCGCCACTCATCCAAGTTCAGAGAGACGCCTGCTTCCAC
AATATTATATGGTCTACTTGCTCTATACTTTTAACATGATGTTGTTTTTT
GCACATATAGTGAAATGTACATTTTTTATCGCAGGAAAGTCTACAAGATG
AACTGTACTGCCAACTCGTCAAACAGCTGACAAACAATAAAAAGCGGTGA
GTTTACACATTGATACTAAATGATAGTTATGACCATATGAATATGTTTGA
TACGCAATGAAGATCGTATGAGCTTGTTTAACTTTTAGACCGTCTGCATC
AATTCAGCCAGATCTATTCCTACTTGCAGTTCCAATGAAGACCGCTGCTG
GGAACTTCTGTGGTTGTGTGCTGGGTGTTTTCCTTGCAGGTAGGTATAGC
ATAACAAGTATATTAAATGAATCACATATCATAAGATGTGACAAACTATA
GCTATGACTGTATGATACGATCGCATATAGTTCATTAATCTTTTTTGTCG
TCTCTGTCATAACTAACATTACGGTTAGCATCATAATTGTGTCATTGTCT
GTAGAATCATTTGTCAAATCACTTAATGACTGATGTTTCGACTTCCTGAG
TTATGTACATGTATAATGTTACATGCTTCGAATCATGATCCCACAGCCAG
CCTCTGAGGTTTCATGTGACGTCATTCCTACTTCACAAACGACGCTCTCC
TTTGGCACGTGACTGTCTCCTCAGACTGGAAAGGACCGTACAGTAAGTAC
ATATATATCGAAATCGAAGTGGCTTAAACTTTTCTGTAAAACGCCACAGT
CATACGAGTTTTCAATCCAGGCTTCTAATATGCAGATAACCATCATTTTG
TAAAAATGTCACGTTAAATAGTTGTGTTAAAACTCTTTCCCCTTGTGTCT
AAGGTATTATGTATATATTGTCCTTGCTCACAAATAAGTCTTTTGTTGTG
TCTTTATTGTATGTTAACTTCCCGTTTATGTAAATAGATTTGCAAATTTA
AGTAATTTCTGTTTTCTCAATCATAGACTAGGCAACCGACGCTCCCCTCC
CCACCCTCTTGAACTACACACAGTGCAGAAGAAAAGTGGTTCATGGGGAC
AAATAGTGATCTTGCCGGACAAGTCTACAGTGGTACTGCGTTTCTTTGAT
TAGTTCGTCTAAATGGTGTTGTGATGAAATATTCATCCGTTAGTGAAGTA
GGGTGGTGATAAAGATGGAGGAAATAGCAAAAAGCAATCCTGGATGTTTT
CTAACTTTCGTAACTTTGTTGATTGGTTGCATGTCCATGGCTGCCATCTA
ACAGATTTCATGTGTACTGCAGGCGATAGCTGTAGAATCCTCCAGCCGCG
GAGGTGACCTGTGCCTTGACGTCACCAATAAACTTGGACTCAAGACGATT
GGCGGAATTAGTCTGTACTGCAGGGTAGCAGACAAAGGTGAGTATTATCG
GACGATATATCTTTCAAATACAGCAGCGTCGCTGAATATAGATATGCTAC
AATATATTATGATGTGATGCGTTCATGGTTAAGTACTAGTCATAACGAAT
GGTTATATCAGAACATTGGCCTAGAATACATTAGTATCCGCTGTATCTAA
GTGTGTAAATCTGTTTCAAACACCTTTGCAGTTGTCAGCATCCCACATGG
AGAATACTACTTTGACTTCCTCTGCAGTATCAGACCGCTCGCAGAATGGC
TCAGCTCGGAAGGTGCCTTTCTCCTTCCTCTTATTTTTATTCCACCATGT
CTCGGGGATTATTGCTGTCTGTGCATACGTATTGCGATATGTTTATAGTA
AGATTATTGGAATATGGGAAAGCCTTGTTCGAATCAATCAACACAACGTC
ATATATGACGTGTCCTAGTGCGGTACGAAGGAACGCTACTTCCTTACATG
GACCTGTCCTTGGTGCTGAACTTGCCATCTGAACGGGTTACCGTAGCCCA
TAGCTACGAAGGCCCACAACGACAAAATTTGTCGCCCCTTTAAACAGTAT
CATCTAATTGGAGAGAACACGCCGAGTACGACCTGCTGTTCCGAAGGAAA
GTGTGGACTGACGTCATGGTGGGAGAAGATTCTGTGGCAGACATGCGCAT
GCACTTCTTTCAGGTTTGTCCGCAGTTTTCACTACGCGCGCTTGAAGCGC
AGTGACATACAAATATGAACGCCATTATCAGAACCATTACTTGACAGATT
GATTGTTTTGTTTATTTGTTTTTTTTTTAATACAGCCAATTCGACGACCG
GTTTTAATCCATCCCAACAATACGGGGGTTTGTTCGGCTCTTTAAAATCA
CAACTGCAAGTTATTTTTCGCAAAGGATTTCGGCATGTTTTGTGAAATTC
CCTACAATGTCGCATGAGAGCGCAATTACCACAGTTTGTCTTGTAACAGG
AACTGGAGTCGTTTCTGAGCGGCCACCACAAGTGCAGTAAGAGCGAGGCT
GTCCAGCTGGCGGCGTACTTGTACAGGGTCAGGTTCGGACAGGCTGGCTT
TGAACTTCACGACGACAAGAAAACTGCGTAAGTCCTGGATACTATGCATA
TAGATATCAACATGTCTTTGCACAAATGTATGTTTCAAACGACTTCTTTT
CACCTAATACCTCCAAGCTAGATTGAATGTTATAATTATCAATGAACTTG
AGGAACTTCTGTTTCTGTCGCTTATACAGTGTTATTAACGAAACTATGCT
CATAATTGTTATCATTTTTTAGAGAGGTTCTGAAAGATCTCATTCCAAGA
GACCTACTACAGATCGAGCCACCAGAGCACTGGAAACAGGTTAGGGCTAC
AGCTATACATTCTGTAGGACTCTTTTTAGACGCCGTAAATGGTAGAAATT
GGCACCCTGCATCTCTGTGGCCTGCTGACTCATTTGGCAAATGCATATGA
TAGCCAATTTTGCTCAATTCTTAAATCATCGACTTGGTTCCAAGAGCTGT
ATAGCAGAGACTAGGCAAGGGCTATTTCAATTCTATTAAAGGCTTCCAAA
GCATCATCAGGACGTTGAAACTGGAAATGGTCAGTACAATTGCGCGGATG
TGGTCAGTACATTGAAAATACATAGAAACGTTATGATACTGTTTGAGAGT
CACTGCTTTGTCTTACTCCGATACATTGTGAGCGCCTGCAATTACAAATC
AGGAGCCAAGACTGTTGCCAGAGTGTATTCTTTTTTCAATATGAAACGCT
TTCTCCAAGTTTGATATGGCTACTTCGTTGCGCTACATTGCAGGACATCG
TTGCAACGTTTAACCGCCACGCCGGGCTGAACAGAGATGACGCCAAGCTA
GCGTTCCTAAGACACGTCAGCACATGGCCCACCTTCGGTTCAGCATTCTT
TCACATTGAGGTAACGTTACATGTCATGAATCTCCAAGCAGATGTATGGC
TTTGTTGGTTGATCCTTTCACACCTCGTGCCTTACAGTGATACATTTTAT
TTTCACTAGACGTCTCTGAACAGACAAGCTACATCATCACACGACGAAGT
AATCTACTTCCCCGGCTGATTAAGAGAAAACTGAATAGTCAATAGACCCA
TGTATGGCCGTTCTAGGTACATTGTTGTTCTAGTGTCCTCTATACCATGT
GTTCTTTGTTTTTCGTACAGAGACACGACTACCGCAAGTACCCGGAAAAA
CTCATGGCCGCCGTCAACAGACGAGGACTAATGTTCATGGACCAGAACAG
TAAGGTAACGTGTAAAACTTCTGTCACAAGACGGCAGTGAAATAGACAGG
TGTCAATCTAAATCCTGATCCTAACTGTACATCACAATCAGCAGTTCAAC
CAATGATATCATGGCTAGACCAATGAGAGAGTGGATTCATGTCCGTCAAA
TATTTGTTATGTCTTTATTTTGCTTTCCTACGTTTTGCCGGAGGGAATGG
TCTACTATATGGTGGGTTGGAATCTTCTTGCCTGGATAGTTTCTGAATCT
ACGATGATAATATTTGAAACAGCGCTGTACGTTTTTGTGTTGACACGTAG
AACACGATCGTCAGTCTGGCATTTGACGAGGTTGAGACGAGCGGCGACAC
CAGGCACCTGTGGGTGACGGGGAACGGCCTGGAGAACACATGGCAGCTCA
CGACGTCGGCGGTAGGAGGCGCTTGTGATTCGTCCACTGACCAAATTATA
TCTCCCCCTTCCACTCTCTTTATAACATTTTTACAATACTGTATCACATG
GTTCACATCTATGATGATTTTGATATTTCATTTCCGTTCTTTCTTCTTTC
ACAGGCATCTCAGATCGACGACTTAGTGAAAGCTTATCAAGATTTTCGTG
AGAAAGAATCTTCTCTTACCAACAAAAGTGTCCTGGTATAAAGTATTAAT
ACATGTAATAAACAGAAGACAACAGGTGGAGCACAAAGCTAAGGGCACAA
CGTTTCTTCTCATCAGTTCCCGGAGAAAAGAAATCTATGATAGTTCACGA
CAGGTTTATTTGTCATCTTGAGAACTTTTACGTTGTGTACATGTAACCAA
AACTTTCCTAATGACCTTCATCGTGTTGTATATTTGCCGGACGGATGTAA
TGTTCTACTTATCTAACGTTAGGTAGTTTACCACTAAACTCAGAAGCGAA
ATCATATTCACAACTCATAGTAGGCAATGGAACATAGATGTACAAAATAA
ACTCGTTTTTCTACAATGTACTTCACCTCACT

Coding sequence (CDS) from alignment at Sc0000049:1017969..1023950+

>BlTCONS00062052 ID=BlTCONS00062052|Name=BlTCONS00062052|organism=Branchiostoma lanceolatum|type=CDS|length=1557bp|location=Sequence derived from alignment at Sc0000049:1017969..1023950+ (Branchiostoma lanceolatum)
ATGTCCATGTCGCCGTTTTGTGATGTCACAACATGGGAGGAGTTTAGCTA
CGGCCACTTCAGGGATCCAGACCCTACCACTCCTGACGAGGGGCGTACTG
GTTGCTGTGCAAGGGGTAGGACGGAAAAGGAACAGGAGATTTGGAGTTTC
TCCAGTAAACCTCTCGGCAAAGCCCTGCTGCGGACCGTGGCTGCCGACAG
ACAGTTGTGTCAGGATGCCGTCACCATGTTCACGGACATTCTCCTCTACT
CCGCCAGGAAGTCTCTGAAGGACGTGTCCGAAGATACTCGACTGGTGGAA
CATATCTTCAGACAGGTTATAAAACGGGAAAGTCTACAAGATGAACTGTA
CTGCCAACTCGTCAAACAGCTGACAAACAATAAAAAGCGTTCCAATGAAG
ACCGCTGCTGGGAACTTCTGTGGTTGTGTGCTGGGTGTTTTCCTTGCAGC
CAGCCTCTGAGGTTTCATGTGACGTCATTCCTACTTCACAAACGACGCTC
TCCTTTGGCACGTGACTGTCTCCTCAGACTGGAAAGGACCGTACAACTAG
GCAACCGACGCTCCCCTCCCCACCCTCTTGAACTACACACAGTGCAGAAG
AAAAGTGGTTCATGGGGACAAATAGTGATCTTGCCGGACAAGTCTACAGT
GGCGATAGCTGTAGAATCCTCCAGCCGCGGAGGTGACCTGTGCCTTGACG
TCACCAATAAACTTGGACTCAAGACGATTGGCGGAATTAGTCTGTACTGC
AGGGTAGCAGACAAAGTTGTCAGCATCCCACATGGAGAATACTACTTTGA
CTTCCTCTGCAGTATCAGACCGCTCGCAGAATGGCTCAGCTCGGAAGTAT
CATCTAATTGGAGAGAACACGCCGAGTACGACCTGCTGTTCCGAAGGAAA
GTGTGGACTGACGTCATGGTGGGAGAAGATTCTGTGGCAGACATGCGCAT
GCACTTCTTTCAGGAACTGGAGTCGTTTCTGAGCGGCCACCACAAGTGCA
GTAAGAGCGAGGCTGTCCAGCTGGCGGCGTACTTGTACAGGGTCAGGTTC
GGACAGGCTGGCTTTGAACTTCACGACGACAAGAAAACTGCAGAGGTTCT
GAAAGATCTCATTCCAAGAGACCTACTACAGATCGAGCCACCAGAGCACT
GGAAACAGGACATCGTTGCAACGTTTAACCGCCACGCCGGGCTGAACAGA
GATGACGCCAAGCTAGCGTTCCTAAGACACGTCAGCACATGGCCCACCTT
CGGTTCAGCATTCTTTCACATTGAGAGACACGACTACCGCAAGTACCCGG
AAAAACTCATGGCCGCCGTCAACAGACGAGGACTAATGTTCATGGACCAG
AACAGTAAGAACACGATCGTCAGTCTGGCATTTGACGAGGTTGAGACGAG
CGGCGACACCAGGCACCTGTGGGTGACGGGGAACGGCCTGGAGAACACAT
GGCAGCTCACGACGTCGGCGGCATCTCAGATCGACGACTTAGTGAAAGCT
TATCAAGATTTTCGTGAGAAAGAATCTTCTCTTACCAACAAAAGTGTCCT
GGTATAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062052-exon-Sc0000049-1564993656:1017969..1018400BlTCONS00062052-exon-Sc0000049-1564993656:1017969..1018400Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1018628..1018892BlTCONS00062052-exon-Sc0000049-1564993656:1018628..1018892Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1019403..1019464BlTCONS00062052-exon-Sc0000049-1564993656:1019403..1019464Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1019598..1019657BlTCONS00062052-exon-Sc0000049-1564993656:1019598..1019657Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1019915..1020010BlTCONS00062052-exon-Sc0000049-1564993656:1019915..1020010Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1020295..1020400BlTCONS00062052-exon-Sc0000049-1564993656:1020295..1020400Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1020591..1020705BlTCONS00062052-exon-Sc0000049-1564993656:1020591..1020705Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1020900..1020980BlTCONS00062052-exon-Sc0000049-1564993656:1020900..1020980Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1021266..1021381BlTCONS00062052-exon-Sc0000049-1564993656:1021266..1021381Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1021668..1021795BlTCONS00062052-exon-Sc0000049-1564993656:1021668..1021795Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1021991..1022057BlTCONS00062052-exon-Sc0000049-1564993656:1021991..1022057Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1022512..1022628BlTCONS00062052-exon-Sc0000049-1564993656:1022512..1022628Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1022889..1022972BlTCONS00062052-exon-Sc0000049-1564993656:1022889..1022972Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1023269..1023379BlTCONS00062052-exon-Sc0000049-1564993656:1023269..1023379Branchiostoma lanceolatumexon
BlTCONS00062052-exon-Sc0000049-1564993656:1023523..1023950BlTCONS00062052-exon-Sc0000049-1564993656:1023523..1023950Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062052BlTCONS00062052-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000049genomeSc0000049:1017969..1023950 +
Properties
Property NameValue
GeneIDBlCUFF030595