BlTCONS00007974 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00007974
Unique NameBlTCONS00007974
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000002:3548925..3557805-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00007974 ID=BlTCONS00007974|Name=BlTCONS00007974|organism=Branchiostoma lanceolatum|type=mRNA|length=8881bp|location=Sequence derived from alignment at Sc0000002:3548925..3557805- (Branchiostoma lanceolatum)
AGAACATCGAGTTTAATTCAATCTCCTACATCTCGATAAAAACGTCAGGT AAAGACTCGCTGAACAACAATTCACACGGACAAATACTATCGCCTTGAAT CAAGATGGCAAGCAAGATGTCGACGGAAGATTTCGACGACCAGTTTTTGA CGTGTCCTGTTTGCATGCTGCACTTCCGGGACCCCAGAATCCTGCCATGT CTGCACACATTTTGTAGGGAGTGTCTGCAAGAATGGGCCACTAAACAACA GCCGCTGGAGTGTCCAACCTGCCGCACACAGGTCAGTCTACCAGACCAAG GCGTGGACGGACTCAGGACCAACTTCTACGTCAACAACCTGCTGGATTTC GCGGCCGTGAAGAAAGGGGCGGGGCCAGGTGTGCCGTGCCAGGTGTGCGA GGGGAATGTGGAGGGGTCAAAGTCTTGGTGTGCCGATTGCGCTACATTAA TGTGTGAGTCATGCGCGGCAGTACACCGGAAACTTCCATCTACAAAAGAC CACGAAGTTACCACCGAAGAAACACTTAAAGCAGATAGAGGTGTGAGCAA ATTTCAGCGCAAACGGCACTGCCACAAACACAAGAACCAAGAGCTGGTTT TCTACTGTGAGAGCTGTAAAGATTTGATTTGTACAGCATGTACCGTGGTC GACCATCGACCGGGCAAAGATCACAATCCGATAGAAATCGCCACTGTTGC TAAGAACAAGAAAGAAACCCTGCAAGAACTTCTTCGGCAGATAGATCCGC GTCTGAGGGAAATAAAGGCGTCTGTTAAGGAAGCTGAGAAGAAGATGACA AACTTAATTCCCTCCAAAGAAGTAGCCATAAACAAAACCAACACGTATTT CCACCGACTTATCGACCTTCTGCAAGAGCGTAGAAAGACGATTTTGAGCC AGATTGACGAACAGTGCCGAGCCGATGGCAAGGCTCTGCAGACCAAGAAG GAAGCAATAGAGTTTGAGTTGGCCGGACTGACGAGCGCACAAACGTTCTG TCAACAAGCTGTGGAACACGGAAGTGACGTGCACATTCTGGAGGTGGGAA ATCAAGTTCAAACAAGGGTAGAAACTCTGCTGGCAAAGGAACTGGACCTG GAGTCCAACTGGAGCGAGTTTCAGTTCGTAGAAAACACAGCTGTAACTGA CTTTGCAGAAGAAATTGGGAACCTTGGTGGTTTACAGACGGACGTTGACG CGTCGAAGTGTAAAGTTGTTGTAAAGCCGGCAGTCCAGGGGTTTCAATGT GTCGCCATTCTGACGACAATGAACAGAGACGGGCAGGCGTGTGTCACAAA CAGCAAAGCGATCACAGCCAACATGAAGGACCCTTCTCGAGCAAACGTCC CGACGAAACTTGACATGAGGAGTGGAGGAGTGTGGGAAATATCGTACTTG TCCAAAGTTACGGGCGACCATGAGTTAGAGGTCAAGGTCAACTCACAACA TGTGTCAGGAAGTCCGTTTGGTGTTAAGGTACAAAACAGGGAGACCCCAG TGTTTACTATCGGTCGAGAGGGTAGTGGGATGGGGGAACTGAGCAATCCG GCAGGTGTCGTGGTTGATAGGGACGGCAACATTGCAGTGCTGGAGCACGC GAACAAACGGGTTCAGATATTTGACGCAAACAAAGGTCACTCTTTGAACA GTTTCCCCGTTGACGGCGAGATTCCATTCGGTATTGATGTAGACTCCAAC GGACGTTTTATTGTGACGTCGTGGGGTGAAAATTACGGAACAAGACGTTA TTCGCAGGAAGGCCAACTTTTGGACACATTCCAATCTGACAGTTTCCAAA ACCCTCTTGGCCTTAAAGTTCTGAAGGACGGCCGCATGGTGGTGGCGGGA GGCCTACAGAAACTATGTCTTCTCCTGCAGCCTGACGGGAGCCTCATCCG GGAGATCGGCAAGGGGCGGTTGAAAACCCCAATCTTTGTGACGGCAGATG AGTCACGTGATGTGCTGTTCGTCACAGATATCAGTGCACACAAGATTTGT GCGTTCGACTTTGACGGAAACTTAATGTTCGATTTTGGCAATCAGGGTAA AAATGATGGAGAGTTTCAACAACCTGGAGGTGTAGCATTAGACCCGTTAG GTAACGTCATTGTAGGTAGCGAAGGAGACGGCCGTGTACAGGTGTTCGGG CCCGACGGAACATTTATTCGGACTGTGGCAACAGTGAAAGGGAATTGTGC CTGTGGAATCACACTAACTCCAGATGGTTGCGTAGCAGTAGCATGTACGG TTGGACATTGTATAGAAGTGTACAGATACATGTAATATCGTCTTACTGTT TGTGCTTCTTTCTGTTATATTTTATTTAATTTACACATGTTTGTACATAT GCTCCTGTATGTGAAATTTCTGTTTATTTGCATTGATGATTACATGTACC AAACTTAAGTTCGGAGTTCATACTTACGTTCATCCACCTTTTGTATGTTA TACATTCATTTATTTACTACACCTTGTGTATAGTCTGCTTTTAGTCGATC ATGTTCATCTCTGTACTTCTGATCTTTTTGTTTATGCAATTAATGTAACC TTATATGGTGTCTTATAAGCCGGCATGGGCTGGGCGCATAATGGCACAAG ACACGTACGTTAAAAAAGTTTTCATTCATTCATTCATTCATTCATTCATA TAATACGGGTGCCAACGGCCAATAATCTATAGGAGCACCTGGTATGATAT GGCTTTGGCATATAGCCGTTCATTTATTGGTAGTCTTGTTGTCGCTCTTA TTCTTTTACTTCGCCGTAAATAATGTGTCATTTTTGCTGTAGATTGGCAA AGTGCTTTCATGCAGTGTAATTGAACGGATCCGGACAAGAACTTGAACTC AGAGTCCTGTCAAGATCATTGTAAAAGGATCTCTTCATTTATTATGTAAG TTAAGTCTCAATTTGCATAATATGTCCTTCCTTATGTACATTTCTGCATA CTAGATAATAAATGTCATTGAAAGCCATCGTTCCTTTGTTCAGTCATTCC CCTTGGAACACTGACAAAAACGCCCCTGCAGTTCCAGAGCAAGCAGCTAG GGGGCCCAAACCTACACCACTTTTTCCTTACATCACAAACTATCTGCCTC CAACAAATCAAGACCATAGCACGTCCAGATCAAAAGATATTAAAAACCGA ATTTTCGAAACAAAAGTTCTGCTGTAGTACCAAGGTCACGTACCAGGTGG TCCAAAATCGACATTGACCTTTGTCTTCCCAACACCTACCAACATTCCAA ATATCATCGTAATCCATCCAGAGGTACTTCAAGTTATGCTGACTAAAATC ACATACAAAATATCAACAGTTCGTTCATGAATAGCTGATTCTCAGTTTAC TATGCTGTTCACGCACGCACCTATTGGCCAAGCTAGATAAATGGGTTTGC CCCCGCCAATACATGAAGTATTAAATTAGGGGTTGCTGTAAATGTATGAT GAATGAAATGAAACTATTTTGTTTTGAGATTCTCCCAAAAGCACAGGCTC ACTGCATATGATACCTGAAGCCTCAATTAACATTTTGTTGACTGTATATT GATGTTTCTGTCATCAATGTCATAAATTTGTCAAATTATTAAGGTACCTG TACCTAAATGTTACGTTTAGTGATACATCCCTAGTATGAGGTCAACACCG ACCAATGGTTGCGCTTGCGGTAAACACGTGACAAACCCTACGTCACCGAA ACTACCTTTGAACCAGGCAGAACATCGAGTTTGATTGAAACTCCTCCATC TCGATAGAAACGTCGGGTAGAGACCCGCTGTACAACAATTAACAGGTACA AATACTATCGTCTAGAATCAAGATGGCAAGTAAGATGTCGAGGGGAGATT TCGACGACCAGTTCCTGACGTGTCCAGTCTGTATGCTGTACTTCCGGGAC CCCAGAATTCTGCCATGTCTGCACACATTTTGTAGGGAGTGTCTGCAAGA ATGGTCAACTAAACAACAGCCGCTGGAATGTCCAACCTGCCGCACACAGG TCAATCTACCAGACCAAGGCGTGGACGGACTCAGGACCAACTTCTACGTC AACAACCTGCTGGATTTCGCGGCCGTGAAGAAAGGGGCGGGGCCAGGTGT GCCGTGCCAGGTGTGCGAGGGGAATGTGGAGGGGGCAAAGTCTTGGTGTG CCGATTGCGCAACCTTAATGTGTGAGTCATGCACGGCAGTACACCGGAAA CTTCCAGCTACAAAAGACCACGAAGTTACCACCGAAGAGACACTCAAAAC AGATAGAGGTGTGAGCAAATTTCAGCGCAAACGGCACTGCCACAAACACA AGAACCAAGAGCTGGTTTTCTACTGTGAGAGCTGTAAAGATTTGATTTGT ACAGCTTGTACCGTGGTCGACCACCGACCGGGCAAAGATCACAATCCGGT AGAAATTGCCACTGTTGCTAAGAGCAAGAAAGAAACCCTGCAAGAGCTTC TTCGGCAGATAGATCCGCGTCTAAATGAAATAAAGGCGTCTGTTAAGGAA GCTGAAAAGAAGATGACAAACTTAATTCCCTTTAAAGAAGTAGCCATAAA CAAAACCAACACGTATTTCCAACAACTTATCGACCTTCTGCAAGAGCGTA GAAAGACGATTTTGAGCCGGATTGACGAACAATGCCGAGCCGATGGCAAG GCTCTACAGACAAAGAAGGAAGCAATAGAGTTTGAGTTGGCCGGACTGAC GAGCGCACAAACGTTCTGTCAACAAGCTGTAGAACACGGAAGTGACGTGC ACATTCTGGAGGTGGGAAACCAAATCCAAACAAGGGTAGAAACTCTGCTG GCAAAGGAACTGGACCTGGAGTCCAACTGGAGCGAGTTTCAGTTCGTAGA AAACGCAGCTGTAACTGACTTTGCAGAAGAAATTGGGAACCTTGGTGGTT TACAGACGGACGTTGACGCGTCGAAGTGTAAAGTTGTTGTAAAGCCGGCA GTCCAGGGGTTTCAATGTGTCGCCATTCTGACGACAATGAACAGAGACGG GCAGGCGTGTGTCACAAACAGCAAAGCGATCACAGCCAACATGAAGGACC CTTCTCGAGCAAACGTCCCGACGAAACTTGACATGAGGAGTGGAGGAGTG TGGGAAATATCGTACTTGCCCAAGGTTACGGGCGACCACGAGTTAGAGGT CAAGGTCAACTCACAACATGTGTCAGGAAGTCCGTTTGGTGTTTATGTAC AAACCAGGGAGACCCCAGTGTTCACTATCGGTCGGAAGGGTAGTGGGGTG GGGGAACTGTACAAGCCGGTAGATGTCGTGGTTGATAGGGACGGCAACAT TGCAGTGCTGGAGTACGCGAACAAACGGGTTCAGATATTTGACACAAACA AAGGTCACTCTTTGAAACGTTTTCCAGTTGATGGCGAGAAACCATTCGGT ATTGATGTAGACTCGAACGGACGTTTCCTTGTGACGTCGTGGGGTGAAAA TTACGGAACAAGACGTTATTCGAAGGAAGGCCAACTTTTGGACACATTCC AATCTGACAGTTTCCAAACCCCTCTTGGCCTTAAAGTTCTGAAGGACGGC CGCATGGTGGTGGCGGGCGGCCCACAGAAACCATGTCTCCTCCTGCAGCC TGACGGGAGCCTCATCCGGGAGATCGATAAGGGACAGTTAAAATATCCAA TATGTGTGACGGCAGATGAGTCACGTGATGTGCTGTACGTCACAGATATC AGTGCACACAAGATTTGTGCGTTCGACTTTGACGGAAACCTCATGTTCGA TTTTGGCAAGCAGGGTAAAAATGAAGGAGAGGTTCAACGACCTCGCGGTG TAGCAATAGACCAGTTAGGTAACGTTATTGTAGGTAACGAAGGAGACGGC CGTGTACAGGTGTTCGGGCCCGACGGAACGTTCATACGGACTGTGGCAAC AGTGAAAGGGAATTGTGCCTGTGGAATCACACTAACTCCAGATGGTTGCG TAGCAGTAGCATGTACGGTTGGACATTGTATAGAACTGTACAGGTACATG TAATACGGGTGCCAACGGTCAATAATCTATAGGAGCACCTGTTATGATAT GGCTTTGGCATCTAGCCGTTCATTTATCGGTAGTCTTGTTGTCGCTCTTA TTCATTTACTTCGCAGTAAATAATGTGTCATTTTGCTGTAGATTGGCAAA GTGCTCTCAGTGTAATTGAACAGATCAGGAAAAGAACTTGTACTCAGAGT CCTGTCGAGCTCATTGTAATAGGTTCATTTATTATGTAAATTAAGTCTCA ATTTGCATAATATGTCCTTCATTATGTACTTTTCTGAATACTAAATAATA AATGTCATTGAAAGCCATCGTTCATTTGTTCAGTTATTCTCCTTGGAACA CTTTGACAAAACGCCACTGCAGTTCCAGAGCAAGCAGCTAGAGGGCCCAA ACCTACACCACTTTTTCCTTACATCACAAAATATCTGCCTCCAACAAATC AAGACCATAGCACGTCCAGGTCAAAAGATACAAAAAACGAATTTTCGAAA CAAAACTTAACGTTCTGCTGTAGTACCAAGGTCACGTACCAGGTGGTCCA AAATCGACCTTAACCTTTGTCTTCCCAACACCTAGCAACATGCTACATAT CATCGTAATCCATCCAGAGTTTCTTCAAGTTATGCTGACTAAAATTACAT ACAAAATATCAACAGTTCGTTCTTGAATAGCTGGTTCTCTGTGTACTATG CTGTTCACGCACGCACCTACTGGCCACGCTAGATAAATGGGTTTTCCCCC GCCAATACCTGAAGTATTAAATTAGGGGTTGCTGTAAATGTATGATGAAT GAAATGAAACTATTTTGTTTTGAGATTCTCCCAAAAGCACAGGCTCACTG CATATGATACCTGAAGCCTCAATTAACATTTTGTTGACTGTATATTGATG TTTCTGTCATCAATGTCATAAATTTGTCAAATTATTAAGGTACCTGTACC TAAATGTTACGTTTAGTGATACATCCCTAGTATGAGGTCAACACCGACCA ATGGTTGCGCTTGCGGTAAACACGTGACACTACGTACGTCACCGAAACTA CCTTCCGAGAACCAGGCAGTGTTTGATAGGAACTCCTACATCTCGATAGA AACGTCGGGTTATGACTCGCTGAACGACAATTCACAGGTAAAAAAATACT ATCGTCTAGGTAAAAAATACTATCGTCTAGAATCAAGATGGCAAGTAAGA TGTCGAGGGAAGATTTCGACAACCAGTTCCTGACGTGCCCAGTCTGTATG CTGCACTTCCGGGACCCCAGAATCCTGCCATGTCTGCACACATTTTGTAA GGAGTGTCTGCAAGAATGGGTCACTAAACAACAGCCGCTGGAGTGTCCAA CCTGCCGCACACAGGTCAGTCTACCAGACCAAGGCGTGGACGGACTCAGG ACCAATTTCTACGTCAACAACCTGCTGGATTTCGCGGCCGTGAAGAAAGG GGCGGGGCCAGGTGTGCCGTGTCAGGTGTGCGAGGGGAATGTGGAGGGGT CAAAGTCTTGGTGTGCCGATTGCGCAACCTTAATATGTGAGTCATGCACG ACAGTACACCGGAAACTTCCAGCTACAAAGGACCACGAAGTTACCACCGA AGAAACTCTTAAAGCAGATAGAGGTCTGAGCAACTTTCAGCGCAAACGGC ACTGCCACAAACACAAGAACCAAGAGCTGGTTTTCTACTGTGAGACCTGT AAAGATTTGATTTGTACGGCATGTACCGTGGTCGACCATCGACCGGGCAA AGATCACAATCCGGTGGAAATCGCCACCGTCGCTAAGAACAAGAAAGAAA CCCTGCAAGAACTTCTGAGGCAGATAGATCCGCGTCTGAAGGAAATACAG GCGTCTGTCGAGGACGCTGAGAGGAAGATGACAAACTTAATTCCCTCCAA AGATGTAGCCATAAACAAAACCAACACGTATTTCCAGCAACTTATCGACC TTCTGCAAGAGCGTAAAAAGACGATTTTGAGCCGGATTGACGAACAATGC CGAGCCGATGGCAAGGCTCTACAGACGACGAAGGAAGCGATAGAGTTTGA GTTGGTCGGACTGACGAGCGCACAATCGTTCTGTCAACAAGCTGTAGAAC ACGGAAGTGACCTGCACATTCTGGAGGTGGGAAATCAAATCCAAACAAGG GTAGAAACTCTGCTGGCAAAGGAACTGGACCTGGAATCCAACTGGAGCGA GTTTAAGTTCGTAGAAAGCACAGCTGTAACTGACTTTGCAGAAGAAATTG GAAACCTTGGCGGTTTACAGACGGACGTTGACGTATCGAAGTGTAAAGTT GTTGTAAAGCCGGCAGTCCAGGGGTTTCAGTGTGTCGCCATTCTGACAAC AATGAACAGAGACGGGCAGGCATGTGTCACAAACAGCAAAGCGATCACAG CCAATATGCAGGACCCGTCTCGAGCAAACGTCCCGACGAAACTTGACATG AGGAGTGGAGGAGTGTGGGAAATATCGTTCTTGCCCAAGGTTACGGGCGA CCATGAGTTAGAGGTCAAGGTCAACTCACAACATGTGTCAGGAAGTCCGT TTGGTGTTAAGGTACAAAACAGGGAGACCCCAGTGTTTACTATCGGTCGG GAGGGTAATGGGGTGGGGGAACTGTACAAGCCGGCAGGTGTCGTGGTTGA TAGGGACGGCAACATTGCAGTGCTAGAGCAGGGGAACAATCGAGTTCAGA TATTTGACGCAAACAAAGGTCACTCTTTGAACAGTTTTCCAGTTGATGGC AAGCATCCATACGGTATTGATGTAGACTCAAACGGACGTTTTCTTGTGAC GTCGTGGGGTGAAAATTACGGAACAAGACGTTATTCGCAGGAAGGCCAAC TTTTGGACACATTCCAATCTGACAGTTTCCG

Coding sequence (CDS) from alignment at Sc0000002:3548925..3557805-

>BlTCONS00007974 ID=BlTCONS00007974|Name=BlTCONS00007974|organism=Branchiostoma lanceolatum|type=CDS|length=1692bp|location=Sequence derived from alignment at Sc0000002:3548925..3557805- (Branchiostoma lanceolatum)
ATGGCAAGCAAGATGTCGACGGAAGATTTCGACGACCAGTTTTTGACGTG
TCCTGTTTGCATGCTGCACTTCCGGGACCCCAGAATCCTGCCATGTCTGC
ACACATTTTGTAGGGAGTGTCTGCAAGAATGGGCCACTAAACAACAGCCG
CTGGAGTGTCCAACCTGCCGCACACAGGTCAGTCTACCAGACCAAGGCGT
GGACGGACTCAGGACCAACTTCTACGTCAACAACCTGCTGGATTTCGCGG
CCGTGAAGAAAGGGGCGGGGCCAGGTGTGCCGTGCCAGGTGTGCGAGGGG
AATGTGGAGGGGTCAAAGTCTTGGTGTGCCGATTGCGCTACATTAATGTG
TGAGTCATGCGCGGCAGTACACCGGAAACTTCCATCTACAAAAGACCACG
AAGTTACCACCGAAGAAACACTTAAAGCAGATAGAGGTGTGAGCAAATTT
CAGCGCAAACGGCACTGCCACAAACACAAGAACCAAGAGCTGGTTTTCTA
CTGTGAGAGCTGTAAAGATTTGATTTGTACAGCATGTACCGTGGTCGACC
ATCGACCGGGCAAAGATCACAATCCGATAGAAATCGCCACTGTTGCTAAG
AACAAGAAAGAAACCCTGCAAGAACTTCTTCGGCAGATAGATCCGCGTCT
GAGGGAAATAAAGGCGTCTGTTAAGGAAGCTGAAAAGAAGATGACAAACT
TAATTCCCTTTAAAGAAGTAGCCATAAACAAAACCAACACGTATTTCCAA
CAACTTATCGACCTTCTGCAAGAGCGTAGAAAGACGATTTTGAGCCGGAT
TGACGAACAATGCCGAGCCGATGGCAAGGCTCTACAGACAAAGAAGGAAG
CAATAGAGTTTGAGTTGGCCGGACTGACGAGCGCACAAACGTTCTGTCAA
CAAGCTGTAGAACACGGAAGTGACGTGCACATTCTGGAGGTGGGAAACCA
AATCCAAACAAGGGTAGAAACTCTGCTGGCAAAGGAACTGGACCTGGAGT
CCAACTGGAGCGAGTTTCAGTTCGTAGAAAACGCAGCTGTAACTGACTTT
GCAGAAGAAATTGGGAACCTTGGTGGTTTACAGACGGACGTTGACGCGTC
GAAGTGTAAAGTTGTTGTAAAGCCGGCAGTCCAGGGGTTTCAATGTGTCG
CCATTCTGACGACAATGAACAGAGACGGGCAGGCGTGTGTCACAAACAGC
AAAGCGATCACAGCCAACATGAAGGACCCTTCTCGAGCAAACGTCCCGAC
GAAACTTGACATGAGGAGTGGAGGAGTGTGGGAAATATCGTACTTGCCCA
AGGTTACGGGCGACCATGAGTTAGAGGTCAAGGTCAACTCACAACATGTG
TCAGGAAGTCCGTTTGGTGTTAAGGTACAAAACAGGGAGACCCCAGTGTT
TACTATCGGTCGGGAGGGTAATGGGGTGGGGGAACTGTACAAGCCGGCAG
GTGTCGTGGTTGATAGGGACGGCAACATTGCAGTGCTAGAGCAGGGGAAC
AATCGAGTTCAGATATTTGACGCAAACAAAGGTCACTCTTTGAACAGTTT
TCCAGTTGATGGCAAGCATCCATACGGTATTGATGTAGACTCAAACGGAC
GTTTTCTTGTGACGTCGTGGGGTGAAAATTACGGAACAAGACGTTATTCG
CAGGAAGGCCAACTTTTGGACACATTCCAATCTGACAGTTTC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00007974BlTCONS00007974-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00007974-exon-Sc0000002-1564993656:3557039..3557805BlTCONS00007974-exon-Sc0000002-1564993656:3557039..3557805Branchiostoma lanceolatumexon
BlTCONS00007974-exon-Sc0000002-1564993656:3552682..3553320BlTCONS00007974-exon-Sc0000002-1564993656:3552682..3553320Branchiostoma lanceolatumexon
BlTCONS00007974-exon-Sc0000002-1564993656:3548925..3549316BlTCONS00007974-exon-Sc0000002-1564993656:3548925..3549316Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:3548925..3557805 -
Properties
Property NameValue
GeneIDBlCUFF003968