XLOC_034176 (gene) - C. hemisphaerica

Overview
NameXLOC_034176
Unique NameXLOC_034176
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_242:69391..80810+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034176 ID=XLOC_034176|Name=XLOC_034176|organism=Clytia hemisphaerica|type=gene|length=11420bp|location=Sequence derived from alignment at scaffold_242:69391..80810+ (Clytia hemisphaerica)
TTTTGCCGGTGAACGAAATCTTCTTTATTAAGAATTATTTCCTTTCTCTG
CTTCATCGGCGCCGTAAAAAGGTAATAGTTTTCTATCCATTTTAGTACAG
CCTCGTTTACAATATCAAAATTTACGCTTGGGTGTCCGCTAGCGTGATTT
TTCATCCATGTGCTAAACCAAGTTCTTTTACAAATATTGCTGAACGGCTT
GCTGTTGGAGGGAATCTTTGGTGTGTAATTTGCTCTAAATTGCTcttaaa
ttcaagaaaatacaaaaatggtCAAAGCAAAGACAAAAACAATAAAGGCA
GAGGAAATTCCAAAATCCAAGAAAGCTAAAAAAGTTGAAACTGACTCTGA
CTCGTCATCTGAAGAAGAGGAAGAAGTCAAAGTCGCACCAAAGAAGAATG
GAAAAGTCAATGGTATGTTTTTTACATTAGATTAgacatttgatatttta
tgcCTAACATCAGAGTAACTGGGATAGGAAAAATACAGTGGGTCTCAGGG
AAGTTTAGGAAAAAGTAGCTGTAACAAAAATGACTATGCTATCAACTTTG
TTGGAATTTCACAATTTGTAAGCTTGTAAGGCTTGTAAGACCCTCAAGGA
TACCTGGTGTAGGCGAATAGGTAGATAAGGGGCATTTGACTGCCTGGATG
CAACTGGAAAGATCCAGGCGTTCTGTGGGATCCTAGGATTGTGGGGAAGC
ATCTGCCTTTAAAAAACAGAGGCGCACTGATATGTCTCTAAACAAGTCCA
GGTCCCATGAGTCCAATCCAAGActgtttgaaatttattttaaatttcct
ATTTGGAGTTACCAAAATTCTTTATGAAAATCATTTAACACAAAActtga
tcaaatttaaaatgtaaaagCAGCAAATATATATACAGAATAGAACAGAA
AAATGAAGTGACTGCTTTTGTAGAAGCGGTTGTTGTGTAGCGCTTTGTAA
ggcaaaaaatctttgaaaattgcagataaaatctttaaaaaaacacTTGA
TGATCAAGAGGCTGGCTACGTTGAATCTACAAAATTATTTGGATAGTATT
GCCAAAAAATCTGACAAATATTACGACTAGAAAAGGGTCAGATTTTTAAG
ATAGAGCGTGAGCGAGTTGGAGGACTTGAACCAACTTATTTGTGACCCAG
GCCTAGCTCAACAAAACCATGTCCCAATCAAAGATAAAGAAGAGGAATGT
GGAATTATTTCTGCATTTCGATCAGCTATCGAAACATAGAACTATTTCTT
TAATGTGGTTTAAATTGTTTTTagtatttacattttttgtgaaatttcta
gCTTCCATTTGAAAAAGGATATCATTTTTTTTTGAGTCACAAAAGATACG
GAAATTACTACATAGCAGTCAGCTGTAAATAATTGGAAATAAAgttaatt
aaattttcaaaatgatttagGTACAACCAAAAAGCCTGTCAAAAAAGAAA
GTTCATCAGAAGACAGTGACAGTAGTGAAGAAGAAGCCAAACCAGCAAAG
AAAAATGGAGTAGCAAATGGAAAAGCTAATGGGAAGAAAGGTAAAATTTT
CAGTTACAGTACACATTgctatatcaattttttttaaatatatcatTTAG
TAAGATTTTGCTGAGGCTTGgcttttcttatatttttggcCCTTTAAGCC
TCAAATTTTTCTTATCCTGTTCTCATggggtgtaattgaggtataTCAAg
cattatacccaatttttactactttgaccccaaaattagtatttttctTA
AATATTCTAATGCTtcggcgattttgagcctcaaagtgtataccttatta
cacaaatattactagtATTTTATTAACACAAATTGAAAAGTTTCATGTTA
ATAAAAACCAGCCGTGATGTCCTTGaagaagcaaataaaatttgtgttaa
ttttttgcgtgttaatttcaaggtcATTGAATACTTTCCTCGTAATATTT
GTGCAATAAGGTAATTAtattattttctggtttacagacattatgaggaa
aagttttggacaggaggatggaaaaaaaaataaaaataaaattaatgttt
taaatttttttttagtttctttttaaaaatctgaattcaaaggaaataat
aaaataaaattttacgaaatttccTAAAGTatcaaatttttagatttaaa
gacaaaagaatAAAGTGCAAGATGTTGTGTAGATTAGTTTTAGATACGCA
TCTACggataaaaacataaaaaatgtacACATAAAGACTGATATGTGTTT
ATGTAAGACTGAcgtaggttcccacttaggttcccccatcccacttctGG
TATGCCTATTTTTCTATCTACTCTTGAATTTTAACAATCACATAAAGGAC
CCTGAATAAAAGCaattacaataaaaaatcaactgcGTAACACAAGAGTT
GtataatttagtttttttttatttacttgcCTAAACCTGGAAAGTAAgac
agaaaaaattaaattaaaaattaaaaaaattaaaaattgatagATATCTC
ATATAATACTCAGTACTGGGCAATACCTAGTTAATTTAACATATGGGGTA
TATTTTGgggcaaaaatttaatttttgacaaTCTAATTTCACTTATTGGA
TTTTGAGGAAAGTTAGCTAAAATGTTTGTTTTAACCTACAGCACCAGCAA
AGAAAGAATCAAGCTCAGAAGAAAGCAGTGATGAAGAGGAAGAAAAACCA
AAAGCTAAAGCTGGTAAAAAGTTTAAagcctttaaattgagaaaatgcaG
ATTACACACACAGATCTAGGGGGTTTAAAAGATCTTTGTGAAactaaaaa
atttttgggggattttttttcattcaacaaccaaatttagaaaattagtA
TTAATAACATTATTTTGGAATAACAGACATGAAGACAATCCCATCTTAGT
CTTCTCAGGACAAATACAGCATTTTCTAGAGCACAATGTTGGTTTTACTA
CACaaataatcatatttttcttctttttttgtcaaACTGATACTTTACCT
TTACTGCGTTTTTGCATAATCAAAGATAGAAGtgcttttttgagagaaaa
aaacagttttgaaaactaattttagGTTTTAGTACTGCCACTTGTAGACC
TTaagtagtaagtctgcgaccgcagtcggaggcgacccgaaggctcctct
ttcgatagctgtctacccgaaggtaggggagggcgccactctttctcNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggttttttcacctttca
aagtctctctaagggtcggaaaaatcagaaagttttaaattagtctctct
aagggtcggaaaattcaggaattttatgaaattttttgatttccagagaa
aaagttgtaataaagtctctctaagggtatgacttttttcaaaaatcgaa
aaaaaacattcaaagagtctctctaagggtcaccttttcagcaaaaatca
gtctctttaagggttgGTTTTCAGAGGTCCCATTCgtacatacccctcat
tcgccaaccctagtaccccccggatgaacgttatgtacagaaaaatttta
tcaCAACTAAAAAAGTTCTAAGATCTGCTAANNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNTTGGTATCTGGatcctgaccccccccctgaccAAAA
AGGGTACTTTTTGTAGTGTTTTACCACCAAAAAGGCTGTGTTAAATATAT
AAAGAAAGCAGTCATAAATAGTAAAAAATTTATAAGTGATAACAAAACAG
GCCATGTCTTAGAAAGGTAGCGTCCATTGGTGACCAAAAAGGGTACTTTT
TGTAGTGTTTTACCACCAAAAAGGCTGTGTTTAGTGAAAGGGGCAGGATC
AGTTAATAAGTGGGCGCTAAAAAAGGGCATTAAAAATGGTCAGACAACAG
AACACATAATTGTTCTGGGTTTCGTCGCTCAAATTGAATTGATAAAGAGG
GCGAAATGTTATCAAGATATTCTATGTTTCTTTTAAGTGCATTCTAGACT
ACTCTTACTTTTGCGGGCAGTGCAAAATGTTGTGTGGATATTTCTCAATG
GTGTGTGATATGCTTGTTTACCAGATTTGTCTTATCTAACAACTTTTTTG
ATTCAGCCCCATCTAAGAAAGTAGCAGCAAAGAAAGAATCAAGCTCAGAA
GAAGACAGTAGTGATGAAGAGGAAGAAAAACCCAAAGCTAAAGCAAAAGG
TACAAATTAATGCAGTGATCTCCTTTAatgtttgaaaatctctttcaTAT
CATGTGATGCtgcaaaattttgaagattaatTTTCACATCTAGATTGGGT
TATATAACAAGAAAACATGAGTTAATACCTGCCTTATGGATCATATGGAA
CAGTGTTGTTGGGCCTCCTAAAGTTTCCTGAATTGTCCTAAATTTTGAAG
CCATCTAAAATCTCCTTTGAAGGTGAAATTTTGAACATACAAGTTTCAGA
AATTTGATTGTGTTTAAACAGTAATAAATGCAAGCAAAtctctttgattc
tttttagCTCCAGCCAAGAAAGCACCAGCTAAGAAAGAATCAAGCTCGGA
AGAAGATAGCAGTGATGAAGAGGAAGAAAAACCAAAAGCTAAAGCAAAAG
GTATGATTATGTTGTTTTGGTAAGAAACTAACTTTGACCTCTATTTCATA
TAATTGATCCTGGTACATCACAAATGACTCTTTTGCTTAAGTTTCTGTCA
CAACAAACTTTGGATTTAGACACTTAAAGTTTTGACACTCACATGACTGA
TTAATATTAAagtttccattttcattttaatcCATTAACATCTCTTTCAG
CTGAAAGCCGAAAGTCTGAGATAGCcttgtccaaattttcgtaatCTTAC
TAAAACATTGCATTTTTTAGCCCCGGCCAAGAAAGCACCAGCTAAGAAAG
AATCAAGCTCAGAAGACAGTAGTGATGAAGAGGAAGAAAAACCAAAAGCT
AAAGCAAAAGGTATAATGATCTTATTTCATATATAGGTAGTGGTTACTTT
TTAAAGGATAGGTTCTACAGTTCAATATTCTTAGTACGCAGCTGTGTATT
GCTTCAACATCTGATTGTACAGATTTTTctccaaatttaaatttctacAA
TTTTGAAATGAAGTTAAAGAAATTTGTTCCCTTGATGTTTTGAAGGTCTA
TCTGAAATAAAAAGCTTTGCTTTGAGCATTGCAATTTTCAAATCTTGGTT
CAATTTTTTTAAGCTCCAGCTAAGAAAGTAGCAGCAAAGAAAGAATCAAG
CTCAGAAGAAGACAGTAGTGATGAAGAGGAAGAAAAACCAAAAGCTAAAC
CTGGTAAATAGTTTGAAACATGCCAAAGATTTATGAAACTCTAccattta
aagggataatcagatgggttgagatttttttgtttttactaaaagtcaaa
aacttctTGTAACATAATTACCTTTGCTTTAGAAATACTtaattaaaaag
attttgagGTTTGCTTAGGAAAATAGAAGGATTCCGCATACCAAATATCC
CAAACCCATAGTGTGCAGTGgggtctgacccccccccccccccttttNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccc
cccccccccatttataTTTCATTCCCCCTATATTTGCATTGGTTGGCAAA
caatatcatactccaggatgcaagtcTCAAATTTTCAATCCGTTGGTGGC
TAAATAGGGCATTTTTTCCTAAGTTgttccactaaaaaggctgtttttac
caatattttagtaatttcaggaGGGGAAGCGGCTGATAACCAGACGCTTA
AAGGGCATAAAAAATGGCCTGATAGAAAATAAGGGGAAATAAGAGAGAGC
AGACCACTTTTCATACCATTCAAGCATCTTGTAATATGATGCTGTCCCTA
TGAGAACGTTAAAATTATTGTGAAAACATCCCTTTTAAGTTTTacaggaa
aaaatgtttcaaattgtCATTTAAGCTTAAAATATGGAATTTTGGCTTTA
GTGAGCATGCATTTGGTGAACctaattttgcagaatttaatttcgcggtt
ttagacAAACACACAAATATTCTCATGAATAAAGAATAACctataaaatt
ggtctttttaggcaATAAAGgacatattttaaacaaaacatCCTCTCAAC
CGCAAAATTATATTCTGCAAAACTtccgaattttgagctgtgaaccaCTA
AATGAAATCCCGTGAAAATATCTTCCCTCAAGTTCATATCAAATGCTTAT
TCTTTTTTAATTCAGCCCCAGCTAAGAAAGTAGCAGCAAAGAAAGAATCA
AGCTCAGAAGAAGACAGTGATGATGAAGAGGAAGAAAAACCTAAAGCTAA
AGCAAAAGGTACAAACCGAGGAAGTCctgttttgtaatattttgataaag
aaaCCAAAGTTTTCTTGTTGTCACTTTTGTGACTTCTGAATTGTAGGTTT
AGTTTCAGCTGATTTTATATTATGATTTAATATTTAGCTCCTGCCAAAAA
GAAAGCTGATTCCAGCTCTGAAGCAGAAAGTTCAGAAGAAGAGGAAGAGA
AACCTGCGAAAAAAGGTAATTTCATTAATATCCttggtctttattttatt
attagtgaggttaagtaaatcagtaaaatcacgacgacgaacgaaaattt
aaaatttctttcaaccaatcaaaagtAATTAGCTGATTTATTTTAGCCCC
ACGTTAAGTGATAGCTCCcaagtacataggtccccccaaaaaagtggtgt
TCTTCCAGGCCCCTCCGTTGGGAAAAATTTCACAACCAGcagggggctga
cgctatgaaGTGNAAAAAAGTGGTGTTCTTCCAGCCCCCTCAAAAAAGTG
GTGTTCTTCCAGCCCCCTCCGTTGGGAAAAATTTCACAACCAGcaggggg
ctgacgctatgaaGTGTTTGCTTCTGTGGTGTGGGAGAGGGCTGCTTTAA
CATCATGCTTTGTCATTATAAGCATGCTGTCTTAATTTATGGTGTGCTGT
TTAAGTGGAGGCATGCGTGTCACATCAAATGATTCAACatgagaaaaaaa
acgaaattctATCTTTTTTAAGCACCAAAACGAAAGAAGGATTCCTCATC
TGAAGATGAAAGTGAAGAAGAGGAACAGCCCAAAAAACGTACGTAATATG
TCTTTAACTTAAGtgttttttcagatttggtTCATTTTCACCGGCTCATT
TTCATGTTGAGTGACCAAGGCTTTTCTCAGGTCACGAGCTCCCCAGCATG
TATTCTGCAATGCTTGGGTCATATCACCAGAATGTAATATTTCTAAAACT
TGCCAACGATTTTAAGAACTTTTACGACCTTTTATTATcatagaaaaaga
agaaaagaaaaatttgaaacgtAAAGCAGACGATTTGGGAGATGTCAATA
CACCAAAGAAAGTAAAGGAAGCAACTTCTCTTTTCATTGGTGGTTTATCA
TACTACACAACTGAAGATGGACTTCGACAATTTTTCGCAGATAACGAAAT
TAATCTTACTAATTGCCGTATTATTACTGATCGTGAAACAGGAAAATCAA
GAGGATTTGGATACGCTGATTTTGACAGCCAAGAAGAAGCAGATAAATGT
TATAAAATTGAGGACACTACTTTAGACGAACGTCAATTACGCTTTGATGC
CTCTAATAGTGGAGCTAAAACGCCGGGTAGTGGTCGTGGTGGACGTGGAG
ACCGCAGAGGTGGTGGTTTCTCAGCTAATCGCAGTGGTGGTCGTGGCGGC
CGCGGAGGATTCAACCGAGATAACGAAACCCCAACAAAATTATTACTTGT
GAAAAATCTCTCATATGACACTTATAATGAATCTTTGATGAGTAAATTTA
GTGGCGCTAATGATGCTCGAGTTGTTAAAGACCAAGATGGAAATTCTAGA
GGTTTCGCTTTTGTTGAATACGATTCAATCGACGACGCAAAAGCAGCTCA
CAAAAGGATGTCCGGTAAAGATGTTGATGGACGTTCTGTAACAATCGTTT
ATGCTACACCAAGAGAAGATTTCAAACCAGGTAGTGGTCGTGGAGGACGA
GGTGGTGGATTCGGCAGCGGTGGCGGCCGTGGAGGTGGCCGTGGACGTGG
TGGATTCGGCGGCGGTCGAGGTGGTCGCGGGGGCGGCCGTGGAGGTCGTG
GTGGAAGTACACCATCAAACAAAGGAAGCATCCAAAAATTCGAAGGCTCC
AAACTGACATTCGATAATGATTCAGATTAAAGAAACAGACAGAATGATAA
GAGATTGTCGTCGTTATTAACGTATAGAGAGGATCGGGATGATCTCTCTT
AACGGCTGCTGGCTGGCCCTCAGGTTTCCCTTCTTCGAACACTTGATGAA
ACTTTTACGAGGAACTCCTCTGTAAATAAACGAGCTCAACTAATTAGCTT
GCTTGAAACAATGATGAACGTTGCGTGTTTGTATTGCAATGTACTTATTT
GGTTTATGATTCTATTTGAAGGTGCGCGGGCTGACTCCCATTCCTTGCTG
TCTTACAAATATATAACTTGCCGAAAAAGCTCCTTGTGGTCCGTTacgaa
gttttgaaaaaacaaaatctaGCTAGCAAAAATTATTCTCATTAAATTTG
TGTGCTTACCATATATTGACATTGAAAGTCAACAATTCTTTACATTAAGA
CTCATTGAtcacatttttatttcatcctATGTGCGTATTAATACCTTCAA
ACGGGCTATAATAAATAACAAtacattatttttttgtatttttttcatgg
TTTTCAATTGGCTTGGAAacttttataaacaaaacttttacAGGACATAA
TACTTTAttatacatttttaatttttgtcattttttggtaaaaaagacAT
CGGATATACGGACAGTGGTAAATAAAAGATTACGTTTTCTGAACACTCCA
CTCCCTTCAAAATGCagtacatgtttttataagcatatcttaGGCTCAGA
TATTgggaaaattaagcatatgtcTTGAGGAAATTGATCTacttaaaaga
aatactttgtTGGAAGGATAATTTTAAGTAAATGATttcaaagctttaaa
aaaaattcgataTAATGgag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00054159TCONS_00054159Clytia hemisphaericatranscript
TCONS_00054160TCONS_00054160Clytia hemisphaericatranscript
TCONS_00054161TCONS_00054161Clytia hemisphaericatranscript
TCONS_00054162TCONS_00054162Clytia hemisphaericatranscript
TCONS_00054163TCONS_00054163Clytia hemisphaericatranscript
TCONS_00054164TCONS_00054164Clytia hemisphaericatranscript
TCONS_00054165TCONS_00054165Clytia hemisphaericatranscript
TCONS_00054166TCONS_00054166Clytia hemisphaericatranscript
TCONS_00054167TCONS_00054167Clytia hemisphaericatranscript
TCONS_00054168TCONS_00054168Clytia hemisphaericatranscript
TCONS_00054169TCONS_00054169Clytia hemisphaericatranscript
TCONS_00054170TCONS_00054170Clytia hemisphaericatranscript
TCONS_00054171TCONS_00054171Clytia hemisphaericatranscript
TCONS_00054172TCONS_00054172Clytia hemisphaericatranscript
TCONS_00054173TCONS_00054173Clytia hemisphaericatranscript
TCONS_00054174TCONS_00054174Clytia hemisphaericatranscript
TCONS_00054175TCONS_00054175Clytia hemisphaericatranscript
TCONS_00054176TCONS_00054176Clytia hemisphaericatranscript
TCONS_00054177TCONS_00054177Clytia hemisphaericatranscript
TCONS_00054178TCONS_00054178Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
NucleolinTCONS_00054159-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:69391..80810 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
NCLnucleolin Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
226.15	205.56	54.12	39.73	1148.94	866.97	605.62	666.82	519.48	528.85	745.53	686.5	1400.74	1463.03	824.96	976.1	497.51	619.16	280.16	329.56	865.59	878.57	587.42	587.23	762.19	932.36	304.81	478.15	433.71	537.09