TCONS_00054161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054161
Unique NameTCONS_00054161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054161 ID=TCONS_00054161|Name=TCONS_00054161|organism=Clytia hemisphaerica|type=transcript|length=2760bp
CGAAATCTTCTTTATTAAGAATTATTTCCTTTCTCTGCTTCATCGGCGCC
GTAAAAAGGTAATAGTTTTCTATCCATTTTAGTACAGCCTCGTTTACAAT
ATCAAAATTTACGCTTGGGTGTCCGCTAGCGTGATTTTTCATCCATGTGC
TAAACCAAGTTCTTTTACAAATATTGCTGAACGGCTTGCTGTTGGAGGGA
ATCTTTGGTGTGTAATTTGCTCTAAATTGCTcttaaattcaagaaaatac
aaaaatggtCAAAGCAAAGACAAAAACAATAAAGGCAGAGGAAATTCCAA
AATCCAAGAAAGCTAAAAAAGTTGAAACTGACTCTGACTCGTCATCTGAA
GAAGAGGAAGAAGTCAAAGTCGCACCAAAGAAGAATGGAAAAGTCAATGG
TACAACCAAAAAGCCTGTCAAAAAAGAAAGTTCATCAGAAGACAGTGACA
GTAGTGAAGAAGAAGCCAAACCAGCAAAGAAAAATGGAGTAGCAAATGGA
AAAGCTAATGGGAAGAAAGCACCAGCAAAGAAAGAATCAAGCTCAGAAGA
AAGCAGTGATGAAGAGGAAGAAAAACCAAAAGCTAAAGCTGCCCCATCTA
AGAAAGTAGCAGCAAAGAAAGAATCAAGCTCAGAAGAAGACAGTAGTGAT
GAAGAGGAAGAAAAACCCAAAGCTAAAGCAAAAGCTCCTGCCAAAAAGAA
AGCTGATTCCAGCTCTGAAGCAGAAAGTTCAGAAGAAGAGGAAGAGAAAC
CTGCGAAAAAAGCACCAAAACGAAAGAAGGATTCCTCATCTGAAGATGAA
AGTGAAGAAGAGGAACAGCCCAAAAAACGTACGTAATATGTCTTTAACTT
AAGtgttttttcagatttggtTCATTTTCACCGGCTCATTTTCATGTTGA
GTGACCAAGGCTTTTCTCAGGTCACGAGCTCCCCAGCATGTATTCTGCAA
TGCTTGGGTCATATCACCAGAATGTAATATTTCTAAAACTTGCCAACGAT
TTTAAGAACTTTTACGACCTTTTATTATcatagaaaaagaagaaaagaaa
aatttgaaacgtAAAGCAGACGATTTGGGAGATGTCAATACACCAAAGAA
AGTAAAGGAAGCAACTTCTCTTTTCATTGGTGGTTTATCATACTACACAA
CTGAAGATGGACTTCGACAATTTTTCGCAGATAACGAAATTAATCTTACT
AATTGCCGTATTATTACTGATCGTGAAACAGGAAAATCAAGAGGATTTGG
ATACGCTGATTTTGACAGCCAAGAAGAAGCAGATAAATGTTATAAAATTG
AGGACACTACTTTAGACGAACGTCAATTACGCTTTGATGCCTCTAATAGT
GGAGCTAAAACGCCGGGTAGTGGTCGTGGTGGACGTGGAGACCGCAGAGG
TGGTGGTTTCTCAGCTAATCGCAGTGGTGGTCGTGGCGGCCGCGGAGGAT
TCAACCGAGATAACGAAACCCCAACAAAATTATTACTTGTGAAAAATCTC
TCATATGACACTTATAATGAATCTTTGATGAGTAAATTTAGTGGCGCTAA
TGATGCTCGAGTTGTTAAAGACCAAGATGGAAATTCTAGAGGTTTCGCTT
TTGTTGAATACGATTCAATCGACGACGCAAAAGCAGCTCACAAAAGGATG
TCCGGTAAAGATGTTGATGGACGTTCTGTAACAATCGTTTATGCTACACC
AAGAGAAGATTTCAAACCAGGTAGTGGTCGTGGAGGACGAGGTGGTGGAT
TCGGCAGCGGTGGCGGCCGTGGAGGTGGCCGTGGACGTGGTGGATTCGGC
GGCGGTCGAGGTGGTCGCGGGGGCGGCCGTGGAGGTCGTGGTGGAAGTAC
ACCATCAAACAAAGGAAGCATCCAAAAATTCGAAGGCTCCAAACTGACAT
TCGATAATGATTCAGATTAAAGAAACAGACAGAATGATAAGAGATTGTCG
TCGTTATTAACGTATAGAGAGGATCGGGATGATCTCTCTTAACGGCTGCT
GGCTGGCCCTCAGGTTTCCCTTCTTCGAACACTTGATGAAACTTTTACGA
GGAACTCCTCTGTAAATAAACGAGCTCAACTAATTAGCTTGCTTGAAACA
ATGATGAACGTTGCGTGTTTGTATTGCAATGTACTTATTTGGTTTATGAT
TCTATTTGAAGGTGCGCGGGCTGACTCCCATTCCTTGCTGTCTTACAAAT
ATATAACTTGCCGAAAAAGCTCCTTGTGGTCCGTTacgaagttttgaaaa
aacaaaatctaGCTAGCAAAAATTATTCTCATTAAATTTGTGTGCTTACC
ATATATTGACATTGAAAGTCAACAATTCTTTACATTAAGACTCATTGAtc
acatttttatttcatcctATGTGCGTATTAATACCTTCAAACGGGCTATA
ATAAATAACAAtacattatttttttgtatttttttcatggTTTTCAATTG
GCTTGGAAacttttataaacaaaacttttacAGGACATAATACTTTAtta
tacatttttaatttttgtcattttttggtaaaaaagacATCGGATATACG
GACAGTGGTAAATAAAAGATTACGTTTTCTGAACACTCCACTCCCTTCAA
AATGCagtacatgtttttataagcatatcttaGGCTCAGATATTgggaaa
attaagcatatgtcTTGAGGAAATTGATCTacttaaaagaaatactttgt
TGGAAGGATAATTTTAAGTAAATGATttcaaagctttaaaaaaaattcga
taTAATGgag
Run BLAST on NCBI

transcript from alignment at scaffold_242:69404..80810+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054161 ID=TCONS_00054161|Name=TCONS_00054161|organism=Clytia hemisphaerica|type=transcript|length=11407bp|location=Sequence derived from alignment at scaffold_242:69404..80810+ (Clytia hemisphaerica)
CGAAATCTTCTTTATTAAGAATTATTTCCTTTCTCTGCTTCATCGGCGCC
GTAAAAAGGTAATAGTTTTCTATCCATTTTAGTACAGCCTCGTTTACAAT
ATCAAAATTTACGCTTGGGTGTCCGCTAGCGTGATTTTTCATCCATGTGC
TAAACCAAGTTCTTTTACAAATATTGCTGAACGGCTTGCTGTTGGAGGGA
ATCTTTGGTGTGTAATTTGCTCTAAATTGCTcttaaattcaagaaaatac
aaaaatggtCAAAGCAAAGACAAAAACAATAAAGGCAGAGGAAATTCCAA
AATCCAAGAAAGCTAAAAAAGTTGAAACTGACTCTGACTCGTCATCTGAA
GAAGAGGAAGAAGTCAAAGTCGCACCAAAGAAGAATGGAAAAGTCAATGG
TATGTTTTTTACATTAGATTAgacatttgatattttatgcCTAACATCAG
AGTAACTGGGATAGGAAAAATACAGTGGGTCTCAGGGAAGTTTAGGAAAA
AGTAGCTGTAACAAAAATGACTATGCTATCAACTTTGTTGGAATTTCACA
ATTTGTAAGCTTGTAAGGCTTGTAAGACCCTCAAGGATACCTGGTGTAGG
CGAATAGGTAGATAAGGGGCATTTGACTGCCTGGATGCAACTGGAAAGAT
CCAGGCGTTCTGTGGGATCCTAGGATTGTGGGGAAGCATCTGCCTTTAAA
AAACAGAGGCGCACTGATATGTCTCTAAACAAGTCCAGGTCCCATGAGTC
CAATCCAAGActgtttgaaatttattttaaatttcctATTTGGAGTTACC
AAAATTCTTTATGAAAATCATTTAACACAAAActtgatcaaatttaaaat
gtaaaagCAGCAAATATATATACAGAATAGAACAGAAAAATGAAGTGACT
GCTTTTGTAGAAGCGGTTGTTGTGTAGCGCTTTGTAAggcaaaaaatctt
tgaaaattgcagataaaatctttaaaaaaacacTTGATGATCAAGAGGCT
GGCTACGTTGAATCTACAAAATTATTTGGATAGTATTGCCAAAAAATCTG
ACAAATATTACGACTAGAAAAGGGTCAGATTTTTAAGATAGAGCGTGAGC
GAGTTGGAGGACTTGAACCAACTTATTTGTGACCCAGGCCTAGCTCAACA
AAACCATGTCCCAATCAAAGATAAAGAAGAGGAATGTGGAATTATTTCTG
CATTTCGATCAGCTATCGAAACATAGAACTATTTCTTTAATGTGGTTTAA
ATTGTTTTTagtatttacattttttgtgaaatttctagCTTCCATTTGAA
AAAGGATATCATTTTTTTTTGAGTCACAAAAGATACGGAAATTACTACAT
AGCAGTCAGCTGTAAATAATTGGAAATAAAgttaattaaattttcaaaat
gatttagGTACAACCAAAAAGCCTGTCAAAAAAGAAAGTTCATCAGAAGA
CAGTGACAGTAGTGAAGAAGAAGCCAAACCAGCAAAGAAAAATGGAGTAG
CAAATGGAAAAGCTAATGGGAAGAAAGGTAAAATTTTCAGTTACAGTACA
CATTgctatatcaattttttttaaatatatcatTTAGTAAGATTTTGCTG
AGGCTTGgcttttcttatatttttggcCCTTTAAGCCTCAAATTTTTCTT
ATCCTGTTCTCATggggtgtaattgaggtataTCAAgcattatacccaat
ttttactactttgaccccaaaattagtatttttctTAAATATTCTAATGC
Ttcggcgattttgagcctcaaagtgtataccttattacacaaatattact
agtATTTTATTAACACAAATTGAAAAGTTTCATGTTAATAAAAACCAGCC
GTGATGTCCTTGaagaagcaaataaaatttgtgttaattttttgcgtgtt
aatttcaaggtcATTGAATACTTTCCTCGTAATATTTGTGCAATAAGGTA
ATTAtattattttctggtttacagacattatgaggaaaagttttggacag
gaggatggaaaaaaaaataaaaataaaattaatgttttaaattttttttt
agtttctttttaaaaatctgaattcaaaggaaataataaaataaaatttt
acgaaatttccTAAAGTatcaaatttttagatttaaagacaaaagaatAA
AGTGCAAGATGTTGTGTAGATTAGTTTTAGATACGCATCTACggataaaa
acataaaaaatgtacACATAAAGACTGATATGTGTTTATGTAAGACTGAc
gtaggttcccacttaggttcccccatcccacttctGGTATGCCTATTTTT
CTATCTACTCTTGAATTTTAACAATCACATAAAGGACCCTGAATAAAAGC
aattacaataaaaaatcaactgcGTAACACAAGAGTTGtataatttagtt
tttttttatttacttgcCTAAACCTGGAAAGTAAgacagaaaaaattaaa
ttaaaaattaaaaaaattaaaaattgatagATATCTCATATAATACTCAG
TACTGGGCAATACCTAGTTAATTTAACATATGGGGTATATTTTGgggcaa
aaatttaatttttgacaaTCTAATTTCACTTATTGGATTTTGAGGAAAGT
TAGCTAAAATGTTTGTTTTAACCTACAGCACCAGCAAAGAAAGAATCAAG
CTCAGAAGAAAGCAGTGATGAAGAGGAAGAAAAACCAAAAGCTAAAGCTG
GTAAAAAGTTTAAagcctttaaattgagaaaatgcaGATTACACACACAG
ATCTAGGGGGTTTAAAAGATCTTTGTGAAactaaaaaatttttgggggat
tttttttcattcaacaaccaaatttagaaaattagtATTAATAACATTAT
TTTGGAATAACAGACATGAAGACAATCCCATCTTAGTCTTCTCAGGACAA
ATACAGCATTTTCTAGAGCACAATGTTGGTTTTACTACACaaataatcat
atttttcttctttttttgtcaaACTGATACTTTACCTTTACTGCGTTTTT
GCATAATCAAAGATAGAAGtgcttttttgagagaaaaaaacagttttgaa
aactaattttagGTTTTAGTACTGCCACTTGTAGACCTTaagtagtaagt
ctgcgaccgcagtcggaggcgacccgaaggctcctctttcgatagctgtc
tacccgaaggtaggggagggcgccactctttctcNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNggttttttcacctttcaaagtctctctaag
ggtcggaaaaatcagaaagttttaaattagtctctctaagggtcggaaaa
ttcaggaattttatgaaattttttgatttccagagaaaaagttgtaataa
agtctctctaagggtatgacttttttcaaaaatcgaaaaaaaacattcaa
agagtctctctaagggtcaccttttcagcaaaaatcagtctctttaaggg
ttgGTTTTCAGAGGTCCCATTCgtacatacccctcattcgccaaccctag
taccccccggatgaacgttatgtacagaaaaattttatcaCAACTAAAAA
AGTTCTAAGATCTGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTGGTATCTGGatcctgaccccccccctgaccAAAAAGGGTACTTTTTG
TAGTGTTTTACCACCAAAAAGGCTGTGTTAAATATATAAAGAAAGCAGTC
ATAAATAGTAAAAAATTTATAAGTGATAACAAAACAGGCCATGTCTTAGA
AAGGTAGCGTCCATTGGTGACCAAAAAGGGTACTTTTTGTAGTGTTTTAC
CACCAAAAAGGCTGTGTTTAGTGAAAGGGGCAGGATCAGTTAATAAGTGG
GCGCTAAAAAAGGGCATTAAAAATGGTCAGACAACAGAACACATAATTGT
TCTGGGTTTCGTCGCTCAAATTGAATTGATAAAGAGGGCGAAATGTTATC
AAGATATTCTATGTTTCTTTTAAGTGCATTCTAGACTACTCTTACTTTTG
CGGGCAGTGCAAAATGTTGTGTGGATATTTCTCAATGGTGTGTGATATGC
TTGTTTACCAGATTTGTCTTATCTAACAACTTTTTTGATTCAGCCCCATC
TAAGAAAGTAGCAGCAAAGAAAGAATCAAGCTCAGAAGAAGACAGTAGTG
ATGAAGAGGAAGAAAAACCCAAAGCTAAAGCAAAAGGTACAAATTAATGC
AGTGATCTCCTTTAatgtttgaaaatctctttcaTATCATGTGATGCtgc
aaaattttgaagattaatTTTCACATCTAGATTGGGTTATATAACAAGAA
AACATGAGTTAATACCTGCCTTATGGATCATATGGAACAGTGTTGTTGGG
CCTCCTAAAGTTTCCTGAATTGTCCTAAATTTTGAAGCCATCTAAAATCT
CCTTTGAAGGTGAAATTTTGAACATACAAGTTTCAGAAATTTGATTGTGT
TTAAACAGTAATAAATGCAAGCAAAtctctttgattctttttagCTCCAG
CCAAGAAAGCACCAGCTAAGAAAGAATCAAGCTCGGAAGAAGATAGCAGT
GATGAAGAGGAAGAAAAACCAAAAGCTAAAGCAAAAGGTATGATTATGTT
GTTTTGGTAAGAAACTAACTTTGACCTCTATTTCATATAATTGATCCTGG
TACATCACAAATGACTCTTTTGCTTAAGTTTCTGTCACAACAAACTTTGG
ATTTAGACACTTAAAGTTTTGACACTCACATGACTGATTAATATTAAagt
ttccattttcattttaatcCATTAACATCTCTTTCAGCTGAAAGCCGAAA
GTCTGAGATAGCcttgtccaaattttcgtaatCTTACTAAAACATTGCAT
TTTTTAGCCCCGGCCAAGAAAGCACCAGCTAAGAAAGAATCAAGCTCAGA
AGACAGTAGTGATGAAGAGGAAGAAAAACCAAAAGCTAAAGCAAAAGGTA
TAATGATCTTATTTCATATATAGGTAGTGGTTACTTTTTAAAGGATAGGT
TCTACAGTTCAATATTCTTAGTACGCAGCTGTGTATTGCTTCAACATCTG
ATTGTACAGATTTTTctccaaatttaaatttctacAATTTTGAAATGAAG
TTAAAGAAATTTGTTCCCTTGATGTTTTGAAGGTCTATCTGAAATAAAAA
GCTTTGCTTTGAGCATTGCAATTTTCAAATCTTGGTTCAATTTTTTTAAG
CTCCAGCTAAGAAAGTAGCAGCAAAGAAAGAATCAAGCTCAGAAGAAGAC
AGTAGTGATGAAGAGGAAGAAAAACCAAAAGCTAAACCTGGTAAATAGTT
TGAAACATGCCAAAGATTTATGAAACTCTAccatttaaagggataatcag
atgggttgagatttttttgtttttactaaaagtcaaaaacttctTGTAAC
ATAATTACCTTTGCTTTAGAAATACTtaattaaaaagattttgagGTTTG
CTTAGGAAAATAGAAGGATTCCGCATACCAAATATCCCAAACCCATAGTG
TGCAGTGgggtctgacccccccccccccccttttNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccattt
ataTTTCATTCCCCCTATATTTGCATTGGTTGGCAAAcaatatcatactc
caggatgcaagtcTCAAATTTTCAATCCGTTGGTGGCTAAATAGGGCATT
TTTTCCTAAGTTgttccactaaaaaggctgtttttaccaatattttagta
atttcaggaGGGGAAGCGGCTGATAACCAGACGCTTAAAGGGCATAAAAA
ATGGCCTGATAGAAAATAAGGGGAAATAAGAGAGAGCAGACCACTTTTCA
TACCATTCAAGCATCTTGTAATATGATGCTGTCCCTATGAGAACGTTAAA
ATTATTGTGAAAACATCCCTTTTAAGTTTTacaggaaaaaatgtttcaaa
ttgtCATTTAAGCTTAAAATATGGAATTTTGGCTTTAGTGAGCATGCATT
TGGTGAACctaattttgcagaatttaatttcgcggttttagacAAACACA
CAAATATTCTCATGAATAAAGAATAACctataaaattggtctttttaggc
aATAAAGgacatattttaaacaaaacatCCTCTCAACCGCAAAATTATAT
TCTGCAAAACTtccgaattttgagctgtgaaccaCTAAATGAAATCCCGT
GAAAATATCTTCCCTCAAGTTCATATCAAATGCTTATTCTTTTTTAATTC
AGCCCCAGCTAAGAAAGTAGCAGCAAAGAAAGAATCAAGCTCAGAAGAAG
ACAGTGATGATGAAGAGGAAGAAAAACCTAAAGCTAAAGCAAAAGGTACA
AACCGAGGAAGTCctgttttgtaatattttgataaagaaaCCAAAGTTTT
CTTGTTGTCACTTTTGTGACTTCTGAATTGTAGGTTTAGTTTCAGCTGAT
TTTATATTATGATTTAATATTTAGCTCCTGCCAAAAAGAAAGCTGATTCC
AGCTCTGAAGCAGAAAGTTCAGAAGAAGAGGAAGAGAAACCTGCGAAAAA
AGGTAATTTCATTAATATCCttggtctttattttattattagtgaggtta
agtaaatcagtaaaatcacgacgacgaacgaaaatttaaaatttctttca
accaatcaaaagtAATTAGCTGATTTATTTTAGCCCCACGTTAAGTGATA
GCTCCcaagtacataggtccccccaaaaaagtggtgtTCTTCCAGGCCCC
TCCGTTGGGAAAAATTTCACAACCAGcagggggctgacgctatgaaGTGN
AAAAAAGTGGTGTTCTTCCAGCCCCCTCAAAAAAGTGGTGTTCTTCCAGC
CCCCTCCGTTGGGAAAAATTTCACAACCAGcagggggctgacgctatgaa
GTGTTTGCTTCTGTGGTGTGGGAGAGGGCTGCTTTAACATCATGCTTTGT
CATTATAAGCATGCTGTCTTAATTTATGGTGTGCTGTTTAAGTGGAGGCA
TGCGTGTCACATCAAATGATTCAACatgagaaaaaaaacgaaattctATC
TTTTTTAAGCACCAAAACGAAAGAAGGATTCCTCATCTGAAGATGAAAGT
GAAGAAGAGGAACAGCCCAAAAAACGTACGTAATATGTCTTTAACTTAAG
tgttttttcagatttggtTCATTTTCACCGGCTCATTTTCATGTTGAGTG
ACCAAGGCTTTTCTCAGGTCACGAGCTCCCCAGCATGTATTCTGCAATGC
TTGGGTCATATCACCAGAATGTAATATTTCTAAAACTTGCCAACGATTTT
AAGAACTTTTACGACCTTTTATTATcatagaaaaagaagaaaagaaaaat
ttgaaacgtAAAGCAGACGATTTGGGAGATGTCAATACACCAAAGAAAGT
AAAGGAAGCAACTTCTCTTTTCATTGGTGGTTTATCATACTACACAACTG
AAGATGGACTTCGACAATTTTTCGCAGATAACGAAATTAATCTTACTAAT
TGCCGTATTATTACTGATCGTGAAACAGGAAAATCAAGAGGATTTGGATA
CGCTGATTTTGACAGCCAAGAAGAAGCAGATAAATGTTATAAAATTGAGG
ACACTACTTTAGACGAACGTCAATTACGCTTTGATGCCTCTAATAGTGGA
GCTAAAACGCCGGGTAGTGGTCGTGGTGGACGTGGAGACCGCAGAGGTGG
TGGTTTCTCAGCTAATCGCAGTGGTGGTCGTGGCGGCCGCGGAGGATTCA
ACCGAGATAACGAAACCCCAACAAAATTATTACTTGTGAAAAATCTCTCA
TATGACACTTATAATGAATCTTTGATGAGTAAATTTAGTGGCGCTAATGA
TGCTCGAGTTGTTAAAGACCAAGATGGAAATTCTAGAGGTTTCGCTTTTG
TTGAATACGATTCAATCGACGACGCAAAAGCAGCTCACAAAAGGATGTCC
GGTAAAGATGTTGATGGACGTTCTGTAACAATCGTTTATGCTACACCAAG
AGAAGATTTCAAACCAGGTAGTGGTCGTGGAGGACGAGGTGGTGGATTCG
GCAGCGGTGGCGGCCGTGGAGGTGGCCGTGGACGTGGTGGATTCGGCGGC
GGTCGAGGTGGTCGCGGGGGCGGCCGTGGAGGTCGTGGTGGAAGTACACC
ATCAAACAAAGGAAGCATCCAAAAATTCGAAGGCTCCAAACTGACATTCG
ATAATGATTCAGATTAAAGAAACAGACAGAATGATAAGAGATTGTCGTCG
TTATTAACGTATAGAGAGGATCGGGATGATCTCTCTTAACGGCTGCTGGC
TGGCCCTCAGGTTTCCCTTCTTCGAACACTTGATGAAACTTTTACGAGGA
ACTCCTCTGTAAATAAACGAGCTCAACTAATTAGCTTGCTTGAAACAATG
ATGAACGTTGCGTGTTTGTATTGCAATGTACTTATTTGGTTTATGATTCT
ATTTGAAGGTGCGCGGGCTGACTCCCATTCCTTGCTGTCTTACAAATATA
TAACTTGCCGAAAAAGCTCCTTGTGGTCCGTTacgaagttttgaaaaaac
aaaatctaGCTAGCAAAAATTATTCTCATTAAATTTGTGTGCTTACCATA
TATTGACATTGAAAGTCAACAATTCTTTACATTAAGACTCATTGAtcaca
tttttatttcatcctATGTGCGTATTAATACCTTCAAACGGGCTATAATA
AATAACAAtacattatttttttgtatttttttcatggTTTTCAATTGGCT
TGGAAacttttataaacaaaacttttacAGGACATAATACTTTAttatac
atttttaatttttgtcattttttggtaaaaaagacATCGGATATACGGAC
AGTGGTAAATAAAAGATTACGTTTTCTGAACACTCCACTCCCTTCAAAAT
GCagtacatgtttttataagcatatcttaGGCTCAGATATTgggaaaatt
aagcatatgtcTTGAGGAAATTGATCTacttaaaagaaatactttgtTGG
AAGGATAATTTTAAGTAAATGATttcaaagctttaaaaaaaattcgataT
AATGgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034176XLOC_034176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054161-exon-scaffold_242-1491911889:69404..69802TCONS_00054161-exon-scaffold_242-1491911889:69404..69802Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1510915933:69404..69802TCONS_00054161-exon-scaffold_242-1510915933:69404..69802Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1575043694:69404..69802TCONS_00054161-exon-scaffold_242-1575043694:69404..69802Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1491911889:70811..70930TCONS_00054161-exon-scaffold_242-1491911889:70811..70930Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1510915933:70811..70930TCONS_00054161-exon-scaffold_242-1510915933:70811..70930Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1575043694:70811..70930TCONS_00054161-exon-scaffold_242-1575043694:70811..70930Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1491911889:72032..72103TCONS_00054161-exon-scaffold_242-1491911889:72032..72103Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1510915933:72032..72103TCONS_00054161-exon-scaffold_242-1510915933:72032..72103Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1575043694:72032..72103TCONS_00054161-exon-scaffold_242-1575043694:72032..72103Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1491911889:75797..75889TCONS_00054161-exon-scaffold_242-1491911889:75797..75889Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1510915933:75797..75889TCONS_00054161-exon-scaffold_242-1510915933:75797..75889Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1575043694:75797..75889TCONS_00054161-exon-scaffold_242-1575043694:75797..75889Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1491911889:78228..78305TCONS_00054161-exon-scaffold_242-1491911889:78228..78305Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1510915933:78228..78305TCONS_00054161-exon-scaffold_242-1510915933:78228..78305Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1575043694:78228..78305TCONS_00054161-exon-scaffold_242-1575043694:78228..78305Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1491911889:78813..80810TCONS_00054161-exon-scaffold_242-1491911889:78813..80810Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1510915933:78813..80810TCONS_00054161-exon-scaffold_242-1510915933:78813..80810Clytia hemisphaericaexon
TCONS_00054161-exon-scaffold_242-1575043694:78813..80810TCONS_00054161-exon-scaffold_242-1575043694:78813..80810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:69404..80810 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.135629	0.0885383	0.289184	1.47134	0.840553	0.275742	0.528893	0.361433	0.298932	0.992575	0.439119	0.420511	0.632837	0.0648672	0.356258	0.462008	0.265297	0.0650817	0	0.383384	1.07762	0.158138	0.142316	0.11205	0.101188	0	0.465997	0.154973	0.155943
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top