XLOC_044618 (gene) - C. hemisphaerica

Overview
NameXLOC_044618
Unique NameXLOC_044618
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_64:101921..108069-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044618 ID=XLOC_044618|Name=XLOC_044618|organism=Clytia hemisphaerica|type=gene|length=6149bp|location=Sequence derived from alignment at scaffold_64:101921..108069- (Clytia hemisphaerica)
CATAATTTAGCGAAAACAACAAAAACTGATCGGAAATCAAATTTTCATTG
GGCAATCGTTAGGCCAGTGGTGGCAGTTATGGGTGAGCTACGGAGTATCT
TGGTGACATTTAGTTGTTTTATAATTATCTTAACATTGACACAATATAAA
ATGATCGAAGACATACTCTCTAAGAAGAGTAGAGCACAGGATGACAGTGC
AACGTCGAATACGAAGAGACTTTTCTATGATGGTCTGAACACTGGCAAAT
ATCTCAGTCAAATGAGATCAAGCACAAATGGTTTAGAACAGAAAAGAAAT
TGGGAAAGTAGCTTACAGACAGTTCACCACAATTCGAAGACTTTAGAGAA
ACTACTTAACCGTATTGGGGAAGATTCTCCAGAGCTAGTTAACAAGGGGA
GTAATGGGCTGCTGGACCATTTAAGTACTGTTCTCACTACAACTCACAAA
ATCCAAGTACAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGT
TCTTAAGAATTCAAAGAAGGCGAGTACAAAAACATCTGGTTTAGTGAAGG
AAGATTTACATATCGTTCAAGACCAACAGACCCTAAAAAGTACGTCACCC
ATAGAGGCGGAAAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAA
TAAGAAGCATGCCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATAT
TCATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATT
CCTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAA
TGAATGCCAAATCACGTACGACCGGACACTTATCAACCAATCAGATGCTA
TTTTCTTTGATGGACGTATAATACACGAGCTTGATATCGAAATTTTGAAA
AGACTAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGATGCACGA
GAATCCAAATTTCACTTATTATAATATAACACAATATGACCAATTCTTCA
ACTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCTTATTTT
GGAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACA
AACTATGGGTCACCACAGTGTGACGCCTTTTACGATTGGGCGTACATTAA
CGCCTGGGCATAAGGGCGGACAAAGAAAAACACCTTCTCTTAAGCACCGA
CAATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAGAAAGTTCT
AGTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATTCGGACAT
TACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATA
AATCCGGAGCTAGTGCAGTGTCACAGAGACAGTCCTGAATGTGAGGCTCT
AATGAAACGATACAAATTTTATCTGGCGATTGAGAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTACAGTGCATTTTGG
GATGCTGAAAAACCCCACCCTTAAGTGCGGCACATGACGTAGGCCAGATC
ATATGAGTGACCCCCCCGGGTACAAAGGTTAAAAACCCCAGTGAGGATGG
TTTTGGAGTGCAATTTTTAAACATCCAATTTCGAGTGGGGATGAAATCAA
AGTCGATTTCCCAGTGGGGCTAAAATTCAAGGGTATTTTCCCGCCGGGGA
CAAAATTTTTGCTTAATTTTTCAGTGGGGCTGGGGTCCCAGCGGGTCTGT
TTAAGCAGTCGCTTGATTTTTCTGTTCTTTCAGATTTACAATATAAAGCT
AGGCAGTATTTTTACATACGGCGAAATAGTATTCACGGAACATAATTTAG
CGAAAACAACAAAAACTGATCGGAAATCAAATTTTCATTGGGCAATCGTT
AGGCCAGTGGTGGCAGTTATGGGTGAGCTACGGAGTATCTTGGTGACATT
TAGTTGTTTTATAATTATCTTAACATTGACACAATATAAAATGATCGAAG
ACATACTCTCTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAAT
ACGAAGAGACTTTTCTATGACGGTCTGAACACTGACAAATATCTCAGTCA
AATGAGATCAAGCAAAAATGGTTTAGAACAGAAAAGAAATTGGGAAAGTA
GCTTACAGGCAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAAC
CGTACTGGGGAAGATTCTCCAGAGCTAGTTAACAAGGGAAGTGATGGGCT
GCTGGACAATTTAACTATTGTTCTCACTACAACTAACAAAATCCAAATAC
AAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAAT
TCAAAGACGGCGAGTAGAAAAACATCTGGTTTAGTGAGAGAAGATTTACA
TATCAGTCAAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGG
AAAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCAT
GCCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTT
AGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATT
ATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAA
ATCACGTACGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGA
TGGACGTATAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGAT
CGAAATCAGAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAAT
TTCACTTATTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGC
TACCTATAGACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAA
AACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGT
CACCACAGTGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCA
TAAGGGCGGACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCAT
ACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATT
TCACATTGTGACGAATACCGTATGCAAATGATCCGGACATTACGCCAATA
CATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGC
TAGTGCAGTGTCACAGAGACAGCCCTGAATGTGAGGCTCTAATGAAACGA
TACAAATTTTATCTGGCGATTGAGAATTTTTACTGCACTGACTACGTGAC
TGAGAAATATTATCTAAACNACACAATATAAAATGATCGAAGACATACTC
TCTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATACGAAGAG
ACTTTTCTATGATGGTCTGAACACTGGCAAATATCTCAGTCAAATGAGAT
CAAGCACAAATGGTTTAGAACAGAAAAGAAATTGGGAAAGTAGCTTACAG
ACAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACCGTATTGG
GGAAGATTCTCCAGAGCTAGTTAACAAGGGGAGTAATGGGCTGCTGGACC
ATTTAAGTACTGTTCTCACTACAACTCACAAAATCCAAGTACAAAGAACA
GAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGAA
GGCGAGTACAAAAACATCTGGTTTAGTGAAGGAAGATTTACATATCGTNT
CTCTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATACGAAGA
GACTTTTCTATGACGGTCTGAACACTGACAAATATCTCAGTCAAATGAGA
TCAAGCAAAAATGGTTTAGAACAGAAAAGAAATTGGGAAAGTAGCTTACA
GGCAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACCGTACTG
GGGAAGATTCTCCAGAGCTAGTTAACAAGGGAAGTGATGGGCTGCTGGAC
AATTTAACTATTGTTCTCACTACAACTAACAAAATCCAAATACAAAGAAC
AGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGA
CGGCGAGTAGAAAAACATCTGGTTTAGTGAGAGAAGATTTACATATCAGT
CAAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGGAAAATAA
ACCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCATGCCAAAA
ATATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTTAGGACTT
TACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATTATAACAT
GACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAAATCACGT
ACGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGATGGACGT
ATAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGATCGAAATC
AGAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAATTTCACTT
ATTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGCTACCTAT
AGACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAAAACTCCC
CCCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGTCACCACA
GTGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCATAAGGGC
GGACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCATACTTGAA
AAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATTTCACATT
GTGACGAATACCGTATGCAAATGATTCGGACATTACGCCAATACATACCT
GTCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGCTAGTGCA
GTGTCACAGAGACAGTCCTGAATGTGAGGCTCTAATGAAACGATACAAAT
TTTATCTGGCGATTGAGAACTTCTACTGCACTGATTACGTGACTGAGAAA
TATTATCTAAATGGTTTAATTAGACATATTGTACCCATTGTGCTTAACGG
TGGAAATTATAGTGACAATGAAAACGTATTTTTACCAAAGTCCTACATCA
ATATTGAGAAGTTCGATACATTGAAAAAACTTGGCGAATACTTGAATTAT
CTTGATAAAAACGATACTGCTTATAACGAGTATCATCAATGGAGCTATGA
GTATTCAGTTGAACCAAAACATTGCATGTGTAAAGTTTGCAAAGCATTAT
GGGACCATGAAGAAATTGATAGACCAATCAAAACACTCAAATTATCCGAT
TTTTGGGATGCCGAGAAGTTATGTCAATCTTATGACAGGGAGAAGTTCCA
GAAATATATTTATATAAAAAATGAGACGACTCCAAAAGCATAGGGTTAAA
AAAAACTTATATTCATACCAATTTTTTAGATGACCATATTTATTCCCACC
ATATTTTTCCAAACGCTTTGGCTTGGAATTTTTTAGTATTTTTCGAATCC
GTATATGGAGCATATGGCAGACAATTTTCTTTTGTTAGACTATTATAGAC
ATCGCACCAAATTGGTGTTGCGATTTTTGTCATCTCAGAGAAGAAGTCAT
TGCATTGTTTTTTCGCGCGCGTTCTATTTTGCGCCAATCAAATTGCGTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00071878TCONS_00071878Clytia hemisphaericatranscript
TCONS_00071877TCONS_00071877Clytia hemisphaericatranscript
TCONS_00071876TCONS_00071876Clytia hemisphaericatranscript
TCONS_00071875TCONS_00071875Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00071877-proteinTCONS_00071877-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:101921..108069 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (15.93 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.17	0.07	0.04	0	15.93	12.58	14.1	15.46	4.78	3.58	7.22	2.44	0.35	0.14	0.03	0.03	0.48	0.36	0.86	0.67	0.28	0.54	0.14	0.16	0.27	0.47	0.06	0.03	0.13	0.08