TCONS_00071876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071876
Unique NameTCONS_00071876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071876 ID=TCONS_00071876|Name=TCONS_00071876|organism=Clytia hemisphaerica|type=transcript|length=2172bp
TTTACAATATAAAGCTAGGCAGTATTTTTACATACGGCGAAATAGTATTC
ACGGAACATAATTTAgcgaaaacaacaaaaactgatcggaaatcaaattt
tcattggGCAATCGTTAGGCCAGTGGTGGCAGTTATGGGTGAGCTACGGA
GTATCTTGGTGACATTTAGTTGTTTTATAATTATCTTAACATTGACACAA
TATAAAATGATCGAAGACATACTCTCTAAGAAGAGTAGAGCACAGGATGA
CAGTGCAACGTCGAATACGAAGAGACTTTTCTATGACGGTCTGAACACTG
ACAAATATCTCAGTCAAATGagatcaagcaaaaatggtttagaaCAGAAA
AGAAATTGGGAAAGTAGCTTACAGGCAGTTCACCACAATTCGAAGACTTT
AGAGAAACTACTTAACCGTACTGGGGAAGATTCTCCAGAGCTAGTTAACA
AGGGAAGTGATGGGCTGCTGGACAATTTAACTATTGTTCTCACTACAACT
AACAAAATCCAAATACAAAGAACAGAGAAACATATACAAAGAAAGCTAAC
CGATGTTCTTAAGAATTCAAAGACGGCGAGTAGAAAAACATCTGGTTTAG
TGAGAGAAGATTTACATATCAGTCAAGACCAACAGACCCTAAAAAGTACG
TCACCCATAGAGGCggaaaataaaccaaaaacTGCTTCATCAGCGAAATT
TGAGAATAAGAAGCAtgccaaaaatatttcaaaacggAAAACGAAGAAAC
TTATATTCATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGA
TCTATTCCTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCC
GATAAATGAATGCCAAATCACGTACGACCGGACActtatcaaccaatcag
atgcTATTTTCTTTGATGGACGTATAATACACGAGCTTGATatcgaaatt
ttgaaaagactAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGAT
GCATGAGAATCCAAATTTCACTTATTATAATATAACACAATATGACCAAT
TCTTCAACTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCT
TATTTTGGAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGA
TGCACAAACTATGGGTCACCACAGTGTGACGCCTTTTACGTTTGGGCGTA
CATTAACGCCTGGGCATAAGGGCGgacaaaaaaaaacaccttCTCTTAAG
CACCGACAATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAA
AGTTCTAGTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATCC
GGACATTACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGAT
ATCATAAATCCGGAGCTAGTGCAGTGTCACAGAGACAGCCCTGAATGTGA
GGCTCTAATGAAACGATACAAATTTTATCTGGCGATTGAGAACTTCTACT
GCACTGATTACGTGACTGAGAAATATTATCTAAATGGTTTAATTAGACAT
ATTGTACCCATTGTGCTTAACGGTGGAAATTATAGTGACAATGAAAACGT
ATTTTTACCAAAGTCCTACATCAATATTGAGAAGTTCGATACATTGAAAA
AACTTGGCGAATACTTGAATTATCTTGATAAAAACGATACTGCTTATAAC
GAGTATCATCAATGGAGCTATGAGTATTCAGTTGAACCAAAACATTGCAT
GTGTAAAGTTTGCAAAGCATTATGGGACCATGAAGAAATTgatagaccaa
tcaaaacacTCAAATTATCCGATTTTTGGGATGCCGAGAAGTTATGTCAA
TCTTATGACAGGGAGAAGTTCCAGAAatatatttatataaaaaatgagAC
GACTCCAAAAGCATAGggttaaaaaaaacttatattCATACCAATTTTTT
AGATGACCATATTTATTCCCACCATATTTTTCCAAACGCTTTGGCTTgga
attttttagtatttttcgaATCCGTATATGGAGCATATGGCagacaattt
tcttttgttagacTATTATAGACATCGCACCAAATTGGTGTTGCGATTTT
TGTCATCTCagagaagaagtcattgcattgttttttcgcgcgcgttctat
tttgcgccaatcaaattgcgtc
Run BLAST on NCBI

transcript from alignment at scaffold_64:101921..105835-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071876 ID=TCONS_00071876|Name=TCONS_00071876|organism=Clytia hemisphaerica|type=transcript|length=3915bp|location=Sequence derived from alignment at scaffold_64:101921..105835- (Clytia hemisphaerica)
TTTACAATATAAAGCTAGGCAGTATTTTTACATACGGCGAAATAGTATTC ACGGAACATAATTTAGCGAAAACAACAAAAACTGATCGGAAATCAAATTT TCATTGGGCAATCGTTAGGCCAGTGGTGGCAGTTATGGGTGAGCTACGGA GTATCTTGGTGACATTTAGTTGTTTTATAATTATCTTAACATTGACACAA TATAAAATGATCGAAGACATACTCTCTAAGAAGAGTAGAGCACAGGATGA CAGTGCAACGTCGAATACGAAGAGACTTTTCTATGACGGTCTGAACACTG ACAAATATCTCAGTCAAATGAGATCAAGCAAAAATGGTTTAGAACAGAAA AGAAATTGGGAAAGTAGCTTACAGGCAGTTCACCACAATTCGAAGACTTT AGAGAAACTACTTAACCGTACTGGGGAAGATTCTCCAGAGCTAGTTAACA AGGGAAGTGATGGGCTGCTGGACAATTTAACTATTGTTCTCACTACAACT AACAAAATCCAAATACAAAGAACAGAGAAACATATACAAAGAAAGCTAAC CGATGTTCTTAAGAATTCAAAGACGGCGAGTAGAAAAACATCTGGTTTAG TGAGAGAAGATTTACATATCAGTCAAGACCAACAGACCCTAAAAAGTACG TCACCCATAGAGGCGGAAAATAAACCAAAAACTGCTTCATCAGCGAAATT TGAGAATAAGAAGCATGCCAAAAATATTTCAAAACGGAAAACGAAGAAAC TTATATTCATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGA TCTATTCCTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCC GATAAATGAATGCCAAATCACGTACGACCGGACACTTATCAACCAATCAG ATGCTATTTTCTTTGATGGACGTATAATACACGAGCTTGATATCGAAATT TTGAAAAGACTAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGAT GCATGAGAATCCAAATTTCACTTATTATAATATAACACAATATGACCAAT TCTTCAACTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCT TATTTTGGAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGA TGCACAAACTATGGGTCACCACAGTGTGACGCCTTTTACGTTTGGGCGTA CATTAACGCCTGGGCATAAGGGCGGACAAAAAAAAACACCTTCTCTTAAG CACCGACAATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAA AGTTCTAGTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATCC GGACATTACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGAT ATCATAAATCCGGAGCTAGTGCAGTGTCACAGAGACAGCCCTGAATGTGA GGCTCTAATGAAACGATACAAATTTTATCTGGCGATTGAGAATTTTTACT GCACTGACTACGTGACTGAGAAATATTATCTAAACNACACAATATAAAAT GATCGAAGACATACTCTCTAAGAAGAGTAGAGCACAGGATGACAGTGCAA CGTCGAATACGAAGAGACTTTTCTATGATGGTCTGAACACTGGCAAATAT CTCAGTCAAATGAGATCAAGCACAAATGGTTTAGAACAGAAAAGAAATTG GGAAAGTAGCTTACAGACAGTTCACCACAATTCGAAGACTTTAGAGAAAC TACTTAACCGTATTGGGGAAGATTCTCCAGAGCTAGTTAACAAGGGGAGT AATGGGCTGCTGGACCATTTAAGTACTGTTCTCACTACAACTCACAAAAT CCAAGTACAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTTC TTAAGAATTCAAAGAAGGCGAGTACAAAAACATCTGGTTTAGTGAAGGAA GATTTACATATCGTNTCTCTAAGAAGAGTAGAGCACAGGATGACAGTGCA ACGTCGAATACGAAGAGACTTTTCTATGACGGTCTGAACACTGACAAATA TCTCAGTCAAATGAGATCAAGCAAAAATGGTTTAGAACAGAAAAGAAATT GGGAAAGTAGCTTACAGGCAGTTCACCACAATTCGAAGACTTTAGAGAAA CTACTTAACCGTACTGGGGAAGATTCTCCAGAGCTAGTTAACAAGGGAAG TGATGGGCTGCTGGACAATTTAACTATTGTTCTCACTACAACTAACAAAA TCCAAATACAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTT CTTAAGAATTCAAAGACGGCGAGTAGAAAAACATCTGGTTTAGTGAGAGA AGATTTACATATCAGTCAAGACCAACAGACCCTAAAAAGTACGTCACCCA TAGAGGCGGAAAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAAT AAGAAGCATGCCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATATT CATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTC CTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAAT GAATGCCAAATCACGTACGACCGGACACTTATCAACCAATCAGATGCTAT TTTCTTTGATGGACGTATAATACACGAGCTTGATATCGAAATTTTGAAAA GACTAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGATGCATGAG AATCCAAATTTCACTTATTATAATATAACACAATATGACCAATTCTTCAA CTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCTTATTTTG GAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAA ACTATGGGTCACCACAGTGTGACGCCTTTTACGTTTGGGCGTACATTAAC GCCTGGGCATAAGGGCGGACAAAAAAAAACACCTTCTCTTAAGCACCGAC AATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTA GTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATTCGGACATT ACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAA ATCCGGAGCTAGTGCAGTGTCACAGAGACAGTCCTGAATGTGAGGCTCTA ATGAAACGATACAAATTTTATCTGGCGATTGAGAACTTCTACTGCACTGA TTACGTGACTGAGAAATATTATCTAAATGGTTTAATTAGACATATTGTAC CCATTGTGCTTAACGGTGGAAATTATAGTGACAATGAAAACGTATTTTTA CCAAAGTCCTACATCAATATTGAGAAGTTCGATACATTGAAAAAACTTGG CGAATACTTGAATTATCTTGATAAAAACGATACTGCTTATAACGAGTATC ATCAATGGAGCTATGAGTATTCAGTTGAACCAAAACATTGCATGTGTAAA GTTTGCAAAGCATTATGGGACCATGAAGAAATTGATAGACCAATCAAAAC ACTCAAATTATCCGATTTTTGGGATGCCGAGAAGTTATGTCAATCTTATG ACAGGGAGAAGTTCCAGAAATATATTTATATAAAAAATGAGACGACTCCA AAAGCATAGGGTTAAAAAAAACTTATATTCATACCAATTTTTTAGATGAC CATATTTATTCCCACCATATTTTTCCAAACGCTTTGGCTTGGAATTTTTT AGTATTTTTCGAATCCGTATATGGAGCATATGGCAGACAATTTTCTTTTG TTAGACTATTATAGACATCGCACCAAATTGGTGTTGCGATTTTTGTCATC TCAGAGAAGAAGTCATTGCATTGTTTTTTCGCGCGCGTTCTATTTTGCGC CAATCAAATTGCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044618XLOC_044618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071876-exon-scaffold_64-1575043694:104385..105835TCONS_00071876-exon-scaffold_64-1575043694:104385..105835Clytia hemisphaericaexon
TCONS_00071876-exon-scaffold_64-1575043694:101921..102641TCONS_00071876-exon-scaffold_64-1575043694:101921..102641Clytia hemisphaericaexon
TCONS_00071876-exon-scaffold_64-1510915933:104385..105835TCONS_00071876-exon-scaffold_64-1510915933:104385..105835Clytia hemisphaericaexon
TCONS_00071876-exon-scaffold_64-1510915933:101921..102641TCONS_00071876-exon-scaffold_64-1510915933:101921..102641Clytia hemisphaericaexon
TCONS_00071876-exon-scaffold_64-1491911889:104385..105835TCONS_00071876-exon-scaffold_64-1491911889:104385..105835Clytia hemisphaericaexon
TCONS_00071876-exon-scaffold_64-1491911889:101921..102641TCONS_00071876-exon-scaffold_64-1491911889:101921..102641Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:101921..105835 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0409269 0 8.00882 5.99562 7.49186 7.08548 1.79927 1.58237 4.70334 1.02969 0 0.0957852 0 0 0 0.111085 0.330097 0.36536 0.219704 0.40308 0 0 0.1667 0.317782 0 0 0 0
Blast
BLAST of TCONS_00071876 vs. Swiss-Prot (Human)
Match: FUT4 (Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens GN=FUT4 PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.238e-26
Identity = 96/366 (26.23%), Postives = 146/366 (39.89%), Query Frame = 3
Query:  852 INECQITYDRTLINQSDAIFFDGR------------------IIHELDIEIL------------KRLRSKSESQIWIWMMHENPNFTYYNITQYDQFFNWSATYRPSSDIYIPYFGIQKLPPSQYLKQRDAQTMGHHSVTPFTFGRTLTPGHKGGQKKTPSLKHRQLPYLKNFAEGKDKKVLVVISHCDE--YRMQMIRTLRQYIPVDLYG-GCKDIINPELVQCHRDSPECEALMKRYKFYLAIENFYCTDYVTEKYYLNGLIRHIVPIVLNGGNYSDNENVFLPK-SYINIEKFDTLKKLGEYLNYLDKNDTAYNEYHQWSYEYSV-------EPKHCMCKVCKALWDHEEIDRPIKTLKLSDF 1826
            I+ C++  DR    ++ A+ F  R                     E+D+ +L                 +   Q W+WM  E+P+ +    +     FNW+ +YR  SD+++PY          YL  R      H    P                  P L  +Q              V  V+SH DE   R++    L Q++ VD++G G      PE+   H         + RYKFYLA EN    DY+TEK + N L+   VP+VL  G    N   F+P+ ++I+++ F +   L  YL +LD+N   Y  Y  W   Y+V       EP    C+VC+A+      DRP     L+ +
Sbjct:  217 ISGCRLLTDRASYGEAQAVLFHHRDLVKGPPDWPPPWGIQAHTAEEVDLRVLDYEEAAAAAEALATSSPRPPGQRWVWMNFESPSHSPGLRSLASNLFNWTLSYRADSDVFVPY---------GYLYPRS-----HPGDPPSGL--------------APPLSRKQ------------GLVAWVVSHWDERQARVRYYHQLSQHVTVDVFGRGGPGQPVPEIGLLH--------TVARYKFYLAFENSQHLDYITEKLWRNALLAGAVPVVL--GPDRANYERFVPRGAFIHVDDFPSASSLASYLLFLDRNPAVYRRYFHWRRSYAVHITSFWDEP---WCRVCQAV--QRAGDRPKSIRNLASW 527          
The following BLAST results are available for this feature:
BLAST of TCONS_00071876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FUT41.238e-2626.23Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens G... [more]
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