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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071876 ID=TCONS_00071876|Name=TCONS_00071876|organism=Clytia hemisphaerica|type=transcript|length=2172bp
TTTACAATATAAAGCTAGGCAGTATTTTTACATACGGCGAAATAGTATTC
ACGGAACATAATTTAgcgaaaacaacaaaaactgatcggaaatcaaattt
tcattggGCAATCGTTAGGCCAGTGGTGGCAGTTATGGGTGAGCTACGGA
GTATCTTGGTGACATTTAGTTGTTTTATAATTATCTTAACATTGACACAA
TATAAAATGATCGAAGACATACTCTCTAAGAAGAGTAGAGCACAGGATGA
CAGTGCAACGTCGAATACGAAGAGACTTTTCTATGACGGTCTGAACACTG
ACAAATATCTCAGTCAAATGagatcaagcaaaaatggtttagaaCAGAAA
AGAAATTGGGAAAGTAGCTTACAGGCAGTTCACCACAATTCGAAGACTTT
AGAGAAACTACTTAACCGTACTGGGGAAGATTCTCCAGAGCTAGTTAACA
AGGGAAGTGATGGGCTGCTGGACAATTTAACTATTGTTCTCACTACAACT
AACAAAATCCAAATACAAAGAACAGAGAAACATATACAAAGAAAGCTAAC
CGATGTTCTTAAGAATTCAAAGACGGCGAGTAGAAAAACATCTGGTTTAG
TGAGAGAAGATTTACATATCAGTCAAGACCAACAGACCCTAAAAAGTACG
TCACCCATAGAGGCggaaaataaaccaaaaacTGCTTCATCAGCGAAATT
TGAGAATAAGAAGCAtgccaaaaatatttcaaaacggAAAACGAAGAAAC
TTATATTCATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGA
TCTATTCCTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCC
GATAAATGAATGCCAAATCACGTACGACCGGACActtatcaaccaatcag
atgcTATTTTCTTTGATGGACGTATAATACACGAGCTTGATatcgaaatt
ttgaaaagactAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGAT
GCATGAGAATCCAAATTTCACTTATTATAATATAACACAATATGACCAAT
TCTTCAACTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCT
TATTTTGGAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGA
TGCACAAACTATGGGTCACCACAGTGTGACGCCTTTTACGTTTGGGCGTA
CATTAACGCCTGGGCATAAGGGCGgacaaaaaaaaacaccttCTCTTAAG
CACCGACAATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAA
AGTTCTAGTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATCC
GGACATTACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGAT
ATCATAAATCCGGAGCTAGTGCAGTGTCACAGAGACAGCCCTGAATGTGA
GGCTCTAATGAAACGATACAAATTTTATCTGGCGATTGAGAACTTCTACT
GCACTGATTACGTGACTGAGAAATATTATCTAAATGGTTTAATTAGACAT
ATTGTACCCATTGTGCTTAACGGTGGAAATTATAGTGACAATGAAAACGT
ATTTTTACCAAAGTCCTACATCAATATTGAGAAGTTCGATACATTGAAAA
AACTTGGCGAATACTTGAATTATCTTGATAAAAACGATACTGCTTATAAC
GAGTATCATCAATGGAGCTATGAGTATTCAGTTGAACCAAAACATTGCAT
GTGTAAAGTTTGCAAAGCATTATGGGACCATGAAGAAATTgatagaccaa
tcaaaacacTCAAATTATCCGATTTTTGGGATGCCGAGAAGTTATGTCAA
TCTTATGACAGGGAGAAGTTCCAGAAatatatttatataaaaaatgagAC
GACTCCAAAAGCATAGggttaaaaaaaacttatattCATACCAATTTTTT
AGATGACCATATTTATTCCCACCATATTTTTCCAAACGCTTTGGCTTgga
attttttagtatttttcgaATCCGTATATGGAGCATATGGCagacaattt
tcttttgttagacTATTATAGACATCGCACCAAATTGGTGTTGCGATTTT
TGTCATCTCagagaagaagtcattgcattgttttttcgcgcgcgttctat
tttgcgccaatcaaattgcgtc Run BLAST on NCBI transcript from alignment at scaffold_64:101921..105835- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071876 ID=TCONS_00071876|Name=TCONS_00071876|organism=Clytia hemisphaerica|type=transcript|length=3915bp|location=Sequence derived from alignment at scaffold_64:101921..105835- (Clytia hemisphaerica)
TTTACAATATAAAGCTAGGCAGTATTTTTACATACGGCGAAATAGTATTC
ACGGAACATAATTTAGCGAAAACAACAAAAACTGATCGGAAATCAAATTT
TCATTGGGCAATCGTTAGGCCAGTGGTGGCAGTTATGGGTGAGCTACGGA
GTATCTTGGTGACATTTAGTTGTTTTATAATTATCTTAACATTGACACAA
TATAAAATGATCGAAGACATACTCTCTAAGAAGAGTAGAGCACAGGATGA
CAGTGCAACGTCGAATACGAAGAGACTTTTCTATGACGGTCTGAACACTG
ACAAATATCTCAGTCAAATGAGATCAAGCAAAAATGGTTTAGAACAGAAA
AGAAATTGGGAAAGTAGCTTACAGGCAGTTCACCACAATTCGAAGACTTT
AGAGAAACTACTTAACCGTACTGGGGAAGATTCTCCAGAGCTAGTTAACA
AGGGAAGTGATGGGCTGCTGGACAATTTAACTATTGTTCTCACTACAACT
AACAAAATCCAAATACAAAGAACAGAGAAACATATACAAAGAAAGCTAAC
CGATGTTCTTAAGAATTCAAAGACGGCGAGTAGAAAAACATCTGGTTTAG
TGAGAGAAGATTTACATATCAGTCAAGACCAACAGACCCTAAAAAGTACG
TCACCCATAGAGGCGGAAAATAAACCAAAAACTGCTTCATCAGCGAAATT
TGAGAATAAGAAGCATGCCAAAAATATTTCAAAACGGAAAACGAAGAAAC
TTATATTCATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGA
TCTATTCCTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCC
GATAAATGAATGCCAAATCACGTACGACCGGACACTTATCAACCAATCAG
ATGCTATTTTCTTTGATGGACGTATAATACACGAGCTTGATATCGAAATT
TTGAAAAGACTAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGAT
GCATGAGAATCCAAATTTCACTTATTATAATATAACACAATATGACCAAT
TCTTCAACTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCT
TATTTTGGAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGA
TGCACAAACTATGGGTCACCACAGTGTGACGCCTTTTACGTTTGGGCGTA
CATTAACGCCTGGGCATAAGGGCGGACAAAAAAAAACACCTTCTCTTAAG
CACCGACAATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAA
AGTTCTAGTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATCC
GGACATTACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGAT
ATCATAAATCCGGAGCTAGTGCAGTGTCACAGAGACAGCCCTGAATGTGA
GGCTCTAATGAAACGATACAAATTTTATCTGGCGATTGAGAATTTTTACT
GCACTGACTACGTGACTGAGAAATATTATCTAAACNACACAATATAAAAT
GATCGAAGACATACTCTCTAAGAAGAGTAGAGCACAGGATGACAGTGCAA
CGTCGAATACGAAGAGACTTTTCTATGATGGTCTGAACACTGGCAAATAT
CTCAGTCAAATGAGATCAAGCACAAATGGTTTAGAACAGAAAAGAAATTG
GGAAAGTAGCTTACAGACAGTTCACCACAATTCGAAGACTTTAGAGAAAC
TACTTAACCGTATTGGGGAAGATTCTCCAGAGCTAGTTAACAAGGGGAGT
AATGGGCTGCTGGACCATTTAAGTACTGTTCTCACTACAACTCACAAAAT
CCAAGTACAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTTC
TTAAGAATTCAAAGAAGGCGAGTACAAAAACATCTGGTTTAGTGAAGGAA
GATTTACATATCGTNTCTCTAAGAAGAGTAGAGCACAGGATGACAGTGCA
ACGTCGAATACGAAGAGACTTTTCTATGACGGTCTGAACACTGACAAATA
TCTCAGTCAAATGAGATCAAGCAAAAATGGTTTAGAACAGAAAAGAAATT
GGGAAAGTAGCTTACAGGCAGTTCACCACAATTCGAAGACTTTAGAGAAA
CTACTTAACCGTACTGGGGAAGATTCTCCAGAGCTAGTTAACAAGGGAAG
TGATGGGCTGCTGGACAATTTAACTATTGTTCTCACTACAACTAACAAAA
TCCAAATACAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTT
CTTAAGAATTCAAAGACGGCGAGTAGAAAAACATCTGGTTTAGTGAGAGA
AGATTTACATATCAGTCAAGACCAACAGACCCTAAAAAGTACGTCACCCA
TAGAGGCGGAAAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAAT
AAGAAGCATGCCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATATT
CATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTC
CTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAAT
GAATGCCAAATCACGTACGACCGGACACTTATCAACCAATCAGATGCTAT
TTTCTTTGATGGACGTATAATACACGAGCTTGATATCGAAATTTTGAAAA
GACTAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGATGCATGAG
AATCCAAATTTCACTTATTATAATATAACACAATATGACCAATTCTTCAA
CTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCTTATTTTG
GAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAA
ACTATGGGTCACCACAGTGTGACGCCTTTTACGTTTGGGCGTACATTAAC
GCCTGGGCATAAGGGCGGACAAAAAAAAACACCTTCTCTTAAGCACCGAC
AATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTA
GTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATTCGGACATT
ACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAA
ATCCGGAGCTAGTGCAGTGTCACAGAGACAGTCCTGAATGTGAGGCTCTA
ATGAAACGATACAAATTTTATCTGGCGATTGAGAACTTCTACTGCACTGA
TTACGTGACTGAGAAATATTATCTAAATGGTTTAATTAGACATATTGTAC
CCATTGTGCTTAACGGTGGAAATTATAGTGACAATGAAAACGTATTTTTA
CCAAAGTCCTACATCAATATTGAGAAGTTCGATACATTGAAAAAACTTGG
CGAATACTTGAATTATCTTGATAAAAACGATACTGCTTATAACGAGTATC
ATCAATGGAGCTATGAGTATTCAGTTGAACCAAAACATTGCATGTGTAAA
GTTTGCAAAGCATTATGGGACCATGAAGAAATTGATAGACCAATCAAAAC
ACTCAAATTATCCGATTTTTGGGATGCCGAGAAGTTATGTCAATCTTATG
ACAGGGAGAAGTTCCAGAAATATATTTATATAAAAAATGAGACGACTCCA
AAAGCATAGGGTTAAAAAAAACTTATATTCATACCAATTTTTTAGATGAC
CATATTTATTCCCACCATATTTTTCCAAACGCTTTGGCTTGGAATTTTTT
AGTATTTTTCGAATCCGTATATGGAGCATATGGCAGACAATTTTCTTTTG
TTAGACTATTATAGACATCGCACCAAATTGGTGTTGCGATTTTTGTCATC
TCAGAGAAGAAGTCATTGCATTGTTTTTTCGCGCGCGTTCTATTTTGCGC
CAATCAAATTGCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071876-exon-scaffold_64-1575043694:104385..105835 | TCONS_00071876-exon-scaffold_64-1575043694:104385..105835 | Clytia hemisphaerica | exon |
| TCONS_00071876-exon-scaffold_64-1575043694:101921..102641 | TCONS_00071876-exon-scaffold_64-1575043694:101921..102641 | Clytia hemisphaerica | exon |
| TCONS_00071876-exon-scaffold_64-1510915933:104385..105835 | TCONS_00071876-exon-scaffold_64-1510915933:104385..105835 | Clytia hemisphaerica | exon |
| TCONS_00071876-exon-scaffold_64-1510915933:101921..102641 | TCONS_00071876-exon-scaffold_64-1510915933:101921..102641 | Clytia hemisphaerica | exon |
| TCONS_00071876-exon-scaffold_64-1491911889:104385..105835 | TCONS_00071876-exon-scaffold_64-1491911889:104385..105835 | Clytia hemisphaerica | exon |
| TCONS_00071876-exon-scaffold_64-1491911889:101921..102641 | TCONS_00071876-exon-scaffold_64-1491911889:101921..102641 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:101921..105835 - |
Blast
BLAST of TCONS_00071876 vs. Swiss-Prot (Human)
Match: FUT4 (Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens GN=FUT4 PE=2 SV=3) HSP 1 Score: 114.775 bits (286), Expect = 1.238e-26 Identity = 96/366 (26.23%), Postives = 146/366 (39.89%), Query Frame = 3
Query: 852 INECQITYDRTLINQSDAIFFDGR------------------IIHELDIEIL------------KRLRSKSESQIWIWMMHENPNFTYYNITQYDQFFNWSATYRPSSDIYIPYFGIQKLPPSQYLKQRDAQTMGHHSVTPFTFGRTLTPGHKGGQKKTPSLKHRQLPYLKNFAEGKDKKVLVVISHCDE--YRMQMIRTLRQYIPVDLYG-GCKDIINPELVQCHRDSPECEALMKRYKFYLAIENFYCTDYVTEKYYLNGLIRHIVPIVLNGGNYSDNENVFLPK-SYINIEKFDTLKKLGEYLNYLDKNDTAYNEYHQWSYEYSV-------EPKHCMCKVCKALWDHEEIDRPIKTLKLSDF 1826
I+ C++ DR ++ A+ F R E+D+ +L + Q W+WM E+P+ + + FNW+ +YR SD+++PY YL R H P P L +Q V V+SH DE R++ L Q++ VD++G G PE+ H + RYKFYLA EN DY+TEK + N L+ VP+VL G N F+P+ ++I+++ F + L YL +LD+N Y Y W Y+V EP C+VC+A+ DRP L+ +
Sbjct: 217 ISGCRLLTDRASYGEAQAVLFHHRDLVKGPPDWPPPWGIQAHTAEEVDLRVLDYEEAAAAAEALATSSPRPPGQRWVWMNFESPSHSPGLRSLASNLFNWTLSYRADSDVFVPY---------GYLYPRS-----HPGDPPSGL--------------APPLSRKQ------------GLVAWVVSHWDERQARVRYYHQLSQHVTVDVFGRGGPGQPVPEIGLLH--------TVARYKFYLAFENSQHLDYITEKLWRNALLAGAVPVVL--GPDRANYERFVPRGAFIHVDDFPSASSLASYLLFLDRNPAVYRRYFHWRRSYAVHITSFWDEP---WCRVCQAV--QRAGDRPKSIRNLASW 527
The following BLAST results are available for this feature:
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