TCONS_00071875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071875
Unique NameTCONS_00071875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2099

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071875 ID=TCONS_00071875|Name=TCONS_00071875|organism=Clytia hemisphaerica|type=transcript|length=2099bp
ATTTAAGTACTGTTCTCACTACAACTCACAAAATCCAAGTACAAAGAACA
GAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGAA
GGCGAGTACAAAAACATCTGGTTTAGTGAAGGAAGATTTACATATCGTNT
CTCTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATACGAAGA
GACTTTTCTATGACGGTCTGAACACTGACAAATATCTCAGTCAAATGaga
tcaagcaaaaatggtttagaaCAGAAAAGAAATTGGGAAAGTAGCTTACA
GGCAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACCGTACTG
GGGAAGATTCTCCAGAGCTAGTTAACAAGGGAAGTGATGGGCTGCTGGAC
AATTTAACTATTGTTCTCACTACAACTAACAAAATCCAAATACAAAGAAC
AGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGA
CGGCGAGTAGAAAAACATCTGGTTTAGTGAGAGAAGATTTACATATCAGT
CAAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCggaaaataa
accaaaaacTGCTTCATCAGCGAAATTTGAGAATAAGAAGCAtgccaaaa
atatttcaaaacggAAAACGAAGAAACTTATATTCATATCGTTAGGACTT
TACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATTATAACAT
GACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAAATCACGT
ACGACCGGACActtatcaaccaatcagatgcTATTTTCTTTGATGGACGT
ATAATACACGAGCTTGATatcgaaattttgaaaagactAAGATCGAAATC
AGAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAATTTCACTT
ATTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGCTACCTAT
AGACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAAAACTCCC
CCCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGTCACCACA
GTGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCATAAGGGC
GgacaaaaaaaaacaccttCTCTTAAGCACCGACAATTGCCATACTTGAA
AAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATTTCACATT
GTGACGAATACCGTATGCAAATGATTCGGACATTACGCCAATACATACCT
GTCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGCTAGTGCA
GTGTCACAGAGACAGTCCTGAATGTGAGGCTCTAATGAAACGATACAAAT
TTTATCTGGCGATTGAGAACTTCTACTGCACTGATTACGTGACTGAGAAA
TATTATCTAAATGGTTTAATTAGACATATTGTACCCATTGTGCTTAACGG
TGGAAATTATAGTGACAATGAAAACGTATTTTTACCAAAGTCCTACATCA
ATATTGAGAAGTTCGATACATTGAAAAAACTTGGCGAATACTTGAATTAT
CTTGATAAAAACGATACTGCTTATAACGAGTATCATCAATGGAGCTATGA
GTATTCAGTTGAACCAAAACATTGCATGTGTAAAGTTTGCAAAGCATTAT
GGGACCATGAAGAAATTgatagaccaatcaaaacacTCAAATTATCCGAT
TTTTGGGATGCCGAGAAGTTATGTCAATCTTATGACAGGGAGAAGTTCCA
GAAatatatttatataaaaaatgagACGACTCCAAAAGCATAGggttaaa
aaaaacttatattCATACCAATTTTTTAGATGACCATATTTATTCCCACC
ATATTTTTCCAAACGCTTTGGCTTggaattttttagtatttttcgaATCC
GTATATGGAGCATATGGCagacaattttcttttgttagacTATTATAGAC
ATCGCACCAAATTGGTGTTGCGATTTTTGTCATCTCagagaagaagtcat
tgcattgttttttcgcgcgcgttctattttgcgccaatcaaattgcgtc
Run BLAST on NCBI

transcript from alignment at scaffold_64:101921..104019-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071875 ID=TCONS_00071875|Name=TCONS_00071875|organism=Clytia hemisphaerica|type=transcript|length=2099bp|location=Sequence derived from alignment at scaffold_64:101921..104019- (Clytia hemisphaerica)
ATTTAAGTACTGTTCTCACTACAACTCACAAAATCCAAGTACAAAGAACA GAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGAA GGCGAGTACAAAAACATCTGGTTTAGTGAAGGAAGATTTACATATCGTNT CTCTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATACGAAGA GACTTTTCTATGACGGTCTGAACACTGACAAATATCTCAGTCAAATGAGA TCAAGCAAAAATGGTTTAGAACAGAAAAGAAATTGGGAAAGTAGCTTACA GGCAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACCGTACTG GGGAAGATTCTCCAGAGCTAGTTAACAAGGGAAGTGATGGGCTGCTGGAC AATTTAACTATTGTTCTCACTACAACTAACAAAATCCAAATACAAAGAAC AGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGA CGGCGAGTAGAAAAACATCTGGTTTAGTGAGAGAAGATTTACATATCAGT CAAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGGAAAATAA ACCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCATGCCAAAA ATATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTTAGGACTT TACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATTATAACAT GACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAAATCACGT ACGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGATGGACGT ATAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGATCGAAATC AGAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAATTTCACTT ATTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGCTACCTAT AGACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAAAACTCCC CCCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGTCACCACA GTGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCATAAGGGC GGACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCATACTTGAA AAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATTTCACATT GTGACGAATACCGTATGCAAATGATTCGGACATTACGCCAATACATACCT GTCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGCTAGTGCA GTGTCACAGAGACAGTCCTGAATGTGAGGCTCTAATGAAACGATACAAAT TTTATCTGGCGATTGAGAACTTCTACTGCACTGATTACGTGACTGAGAAA TATTATCTAAATGGTTTAATTAGACATATTGTACCCATTGTGCTTAACGG TGGAAATTATAGTGACAATGAAAACGTATTTTTACCAAAGTCCTACATCA ATATTGAGAAGTTCGATACATTGAAAAAACTTGGCGAATACTTGAATTAT CTTGATAAAAACGATACTGCTTATAACGAGTATCATCAATGGAGCTATGA GTATTCAGTTGAACCAAAACATTGCATGTGTAAAGTTTGCAAAGCATTAT GGGACCATGAAGAAATTGATAGACCAATCAAAACACTCAAATTATCCGAT TTTTGGGATGCCGAGAAGTTATGTCAATCTTATGACAGGGAGAAGTTCCA GAAATATATTTATATAAAAAATGAGACGACTCCAAAAGCATAGGGTTAAA AAAAACTTATATTCATACCAATTTTTTAGATGACCATATTTATTCCCACC ATATTTTTCCAAACGCTTTGGCTTGGAATTTTTTAGTATTTTTCGAATCC GTATATGGAGCATATGGCAGACAATTTTCTTTTGTTAGACTATTATAGAC ATCGCACCAAATTGGTGTTGCGATTTTTGTCATCTCAGAGAAGAAGTCAT TGCATTGTTTTTTCGCGCGCGTTCTATTTTGCGCCAATCAAATTGCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044618XLOC_044618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071875-exon-scaffold_64-1575043694:101921..104019TCONS_00071875-exon-scaffold_64-1575043694:101921..104019Clytia hemisphaericaexon
TCONS_00071875-exon-scaffold_64-1510915933:101921..104019TCONS_00071875-exon-scaffold_64-1510915933:101921..104019Clytia hemisphaericaexon
TCONS_00071875-exon-scaffold_64-1491911889:101921..104019TCONS_00071875-exon-scaffold_64-1491911889:101921..104019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:101921..104019 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 2.47967 1.76006 1.70722 3.02179 0.894604 0.419029 0 0.27562 0.0614457 0 0.0319769 0 0 0 0 0 0.0621963 0 0 0 0 0 0 0 0 0
Blast
BLAST of TCONS_00071875 vs. Swiss-Prot (Human)
Match: FUT4 (Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens GN=FUT4 PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.159e-26
Identity = 96/366 (26.23%), Postives = 146/366 (39.89%), Query Frame = 2
Query:  779 INECQITYDRTLINQSDAIFFDGR------------------IIHELDIEIL------------KRLRSKSESQIWIWMMHENPNFTYYNITQYDQFFNWSATYRPSSDIYIPYFGIQKLPPSQYLKQRDAQTMGHHSVTPFTFGRTLTPGHKGGQKKTPSLKHRQLPYLKNFAEGKDKKVLVVISHCDE--YRMQMIRTLRQYIPVDLYG-GCKDIINPELVQCHRDSPECEALMKRYKFYLAIENFYCTDYVTEKYYLNGLIRHIVPIVLNGGNYSDNENVFLPK-SYINIEKFDTLKKLGEYLNYLDKNDTAYNEYHQWSYEYSV-------EPKHCMCKVCKALWDHEEIDRPIKTLKLSDF 1753
            I+ C++  DR    ++ A+ F  R                     E+D+ +L                 +   Q W+WM  E+P+ +    +     FNW+ +YR  SD+++PY          YL  R      H    P                  P L  +Q              V  V+SH DE   R++    L Q++ VD++G G      PE+   H         + RYKFYLA EN    DY+TEK + N L+   VP+VL  G    N   F+P+ ++I+++ F +   L  YL +LD+N   Y  Y  W   Y+V       EP    C+VC+A+      DRP     L+ +
Sbjct:  217 ISGCRLLTDRASYGEAQAVLFHHRDLVKGPPDWPPPWGIQAHTAEEVDLRVLDYEEAAAAAEALATSSPRPPGQRWVWMNFESPSHSPGLRSLASNLFNWTLSYRADSDVFVPY---------GYLYPRS-----HPGDPPSGL--------------APPLSRKQ------------GLVAWVVSHWDERQARVRYYHQLSQHVTVDVFGRGGPGQPVPEIGLLH--------TVARYKFYLAFENSQHLDYITEKLWRNALLAGAVPVVL--GPDRANYERFVPRGAFIHVDDFPSASSLASYLLFLDRNPAVYRRYFHWRRSYAVHITSFWDEP---WCRVCQAV--QRAGDRPKSIRNLASW 527          
The following BLAST results are available for this feature:
BLAST of TCONS_00071875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FUT41.159e-2626.23Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens G... [more]
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