|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071875 ID=TCONS_00071875|Name=TCONS_00071875|organism=Clytia hemisphaerica|type=transcript|length=2099bp
ATTTAAGTACTGTTCTCACTACAACTCACAAAATCCAAGTACAAAGAACA
GAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGAA
GGCGAGTACAAAAACATCTGGTTTAGTGAAGGAAGATTTACATATCGTNT
CTCTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATACGAAGA
GACTTTTCTATGACGGTCTGAACACTGACAAATATCTCAGTCAAATGaga
tcaagcaaaaatggtttagaaCAGAAAAGAAATTGGGAAAGTAGCTTACA
GGCAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACCGTACTG
GGGAAGATTCTCCAGAGCTAGTTAACAAGGGAAGTGATGGGCTGCTGGAC
AATTTAACTATTGTTCTCACTACAACTAACAAAATCCAAATACAAAGAAC
AGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGA
CGGCGAGTAGAAAAACATCTGGTTTAGTGAGAGAAGATTTACATATCAGT
CAAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCggaaaataa
accaaaaacTGCTTCATCAGCGAAATTTGAGAATAAGAAGCAtgccaaaa
atatttcaaaacggAAAACGAAGAAACTTATATTCATATCGTTAGGACTT
TACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATTATAACAT
GACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAAATCACGT
ACGACCGGACActtatcaaccaatcagatgcTATTTTCTTTGATGGACGT
ATAATACACGAGCTTGATatcgaaattttgaaaagactAAGATCGAAATC
AGAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAATTTCACTT
ATTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGCTACCTAT
AGACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAAAACTCCC
CCCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGTCACCACA
GTGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCATAAGGGC
GgacaaaaaaaaacaccttCTCTTAAGCACCGACAATTGCCATACTTGAA
AAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATTTCACATT
GTGACGAATACCGTATGCAAATGATTCGGACATTACGCCAATACATACCT
GTCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGCTAGTGCA
GTGTCACAGAGACAGTCCTGAATGTGAGGCTCTAATGAAACGATACAAAT
TTTATCTGGCGATTGAGAACTTCTACTGCACTGATTACGTGACTGAGAAA
TATTATCTAAATGGTTTAATTAGACATATTGTACCCATTGTGCTTAACGG
TGGAAATTATAGTGACAATGAAAACGTATTTTTACCAAAGTCCTACATCA
ATATTGAGAAGTTCGATACATTGAAAAAACTTGGCGAATACTTGAATTAT
CTTGATAAAAACGATACTGCTTATAACGAGTATCATCAATGGAGCTATGA
GTATTCAGTTGAACCAAAACATTGCATGTGTAAAGTTTGCAAAGCATTAT
GGGACCATGAAGAAATTgatagaccaatcaaaacacTCAAATTATCCGAT
TTTTGGGATGCCGAGAAGTTATGTCAATCTTATGACAGGGAGAAGTTCCA
GAAatatatttatataaaaaatgagACGACTCCAAAAGCATAGggttaaa
aaaaacttatattCATACCAATTTTTTAGATGACCATATTTATTCCCACC
ATATTTTTCCAAACGCTTTGGCTTggaattttttagtatttttcgaATCC
GTATATGGAGCATATGGCagacaattttcttttgttagacTATTATAGAC
ATCGCACCAAATTGGTGTTGCGATTTTTGTCATCTCagagaagaagtcat
tgcattgttttttcgcgcgcgttctattttgcgccaatcaaattgcgtc Run BLAST on NCBI transcript from alignment at scaffold_64:101921..104019- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071875 ID=TCONS_00071875|Name=TCONS_00071875|organism=Clytia hemisphaerica|type=transcript|length=2099bp|location=Sequence derived from alignment at scaffold_64:101921..104019- (Clytia hemisphaerica)
ATTTAAGTACTGTTCTCACTACAACTCACAAAATCCAAGTACAAAGAACA
GAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGAA
GGCGAGTACAAAAACATCTGGTTTAGTGAAGGAAGATTTACATATCGTNT
CTCTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATACGAAGA
GACTTTTCTATGACGGTCTGAACACTGACAAATATCTCAGTCAAATGAGA
TCAAGCAAAAATGGTTTAGAACAGAAAAGAAATTGGGAAAGTAGCTTACA
GGCAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACCGTACTG
GGGAAGATTCTCCAGAGCTAGTTAACAAGGGAAGTGATGGGCTGCTGGAC
AATTTAACTATTGTTCTCACTACAACTAACAAAATCCAAATACAAAGAAC
AGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGA
CGGCGAGTAGAAAAACATCTGGTTTAGTGAGAGAAGATTTACATATCAGT
CAAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGGAAAATAA
ACCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCATGCCAAAA
ATATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTTAGGACTT
TACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATTATAACAT
GACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAAATCACGT
ACGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGATGGACGT
ATAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGATCGAAATC
AGAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAATTTCACTT
ATTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGCTACCTAT
AGACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAAAACTCCC
CCCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGTCACCACA
GTGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCATAAGGGC
GGACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCATACTTGAA
AAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATTTCACATT
GTGACGAATACCGTATGCAAATGATTCGGACATTACGCCAATACATACCT
GTCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGCTAGTGCA
GTGTCACAGAGACAGTCCTGAATGTGAGGCTCTAATGAAACGATACAAAT
TTTATCTGGCGATTGAGAACTTCTACTGCACTGATTACGTGACTGAGAAA
TATTATCTAAATGGTTTAATTAGACATATTGTACCCATTGTGCTTAACGG
TGGAAATTATAGTGACAATGAAAACGTATTTTTACCAAAGTCCTACATCA
ATATTGAGAAGTTCGATACATTGAAAAAACTTGGCGAATACTTGAATTAT
CTTGATAAAAACGATACTGCTTATAACGAGTATCATCAATGGAGCTATGA
GTATTCAGTTGAACCAAAACATTGCATGTGTAAAGTTTGCAAAGCATTAT
GGGACCATGAAGAAATTGATAGACCAATCAAAACACTCAAATTATCCGAT
TTTTGGGATGCCGAGAAGTTATGTCAATCTTATGACAGGGAGAAGTTCCA
GAAATATATTTATATAAAAAATGAGACGACTCCAAAAGCATAGGGTTAAA
AAAAACTTATATTCATACCAATTTTTTAGATGACCATATTTATTCCCACC
ATATTTTTCCAAACGCTTTGGCTTGGAATTTTTTAGTATTTTTCGAATCC
GTATATGGAGCATATGGCAGACAATTTTCTTTTGTTAGACTATTATAGAC
ATCGCACCAAATTGGTGTTGCGATTTTTGTCATCTCAGAGAAGAAGTCAT
TGCATTGTTTTTTCGCGCGCGTTCTATTTTGCGCCAATCAAATTGCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071875-exon-scaffold_64-1575043694:101921..104019 | TCONS_00071875-exon-scaffold_64-1575043694:101921..104019 | Clytia hemisphaerica | exon |
| TCONS_00071875-exon-scaffold_64-1510915933:101921..104019 | TCONS_00071875-exon-scaffold_64-1510915933:101921..104019 | Clytia hemisphaerica | exon |
| TCONS_00071875-exon-scaffold_64-1491911889:101921..104019 | TCONS_00071875-exon-scaffold_64-1491911889:101921..104019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:101921..104019 - |
Blast
BLAST of TCONS_00071875 vs. Swiss-Prot (Human)
Match: FUT4 (Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens GN=FUT4 PE=2 SV=3) HSP 1 Score: 114.775 bits (286), Expect = 1.159e-26 Identity = 96/366 (26.23%), Postives = 146/366 (39.89%), Query Frame = 2
Query: 779 INECQITYDRTLINQSDAIFFDGR------------------IIHELDIEIL------------KRLRSKSESQIWIWMMHENPNFTYYNITQYDQFFNWSATYRPSSDIYIPYFGIQKLPPSQYLKQRDAQTMGHHSVTPFTFGRTLTPGHKGGQKKTPSLKHRQLPYLKNFAEGKDKKVLVVISHCDE--YRMQMIRTLRQYIPVDLYG-GCKDIINPELVQCHRDSPECEALMKRYKFYLAIENFYCTDYVTEKYYLNGLIRHIVPIVLNGGNYSDNENVFLPK-SYINIEKFDTLKKLGEYLNYLDKNDTAYNEYHQWSYEYSV-------EPKHCMCKVCKALWDHEEIDRPIKTLKLSDF 1753
I+ C++ DR ++ A+ F R E+D+ +L + Q W+WM E+P+ + + FNW+ +YR SD+++PY YL R H P P L +Q V V+SH DE R++ L Q++ VD++G G PE+ H + RYKFYLA EN DY+TEK + N L+ VP+VL G N F+P+ ++I+++ F + L YL +LD+N Y Y W Y+V EP C+VC+A+ DRP L+ +
Sbjct: 217 ISGCRLLTDRASYGEAQAVLFHHRDLVKGPPDWPPPWGIQAHTAEEVDLRVLDYEEAAAAAEALATSSPRPPGQRWVWMNFESPSHSPGLRSLASNLFNWTLSYRADSDVFVPY---------GYLYPRS-----HPGDPPSGL--------------APPLSRKQ------------GLVAWVVSHWDERQARVRYYHQLSQHVTVDVFGRGGPGQPVPEIGLLH--------TVARYKFYLAFENSQHLDYITEKLWRNALLAGAVPVVL--GPDRANYERFVPRGAFIHVDDFPSASSLASYLLFLDRNPAVYRRYFHWRRSYAVHITSFWDEP---WCRVCQAV--QRAGDRPKSIRNLASW 527
The following BLAST results are available for this feature:
|
