TCONS_00071877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071877
Unique NameTCONS_00071877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071877 ID=TCONS_00071877|Name=TCONS_00071877|organism=Clytia hemisphaerica|type=transcript|length=1715bp
TAATGGGCTGCTGGACCATTTAAGTACTGTTCTCACTACAACTCACAAAA
TCCAAGTACAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTT
CTTAAGAATTCAAAGAAGGCGAGTACAAAAACATCTGGTTTAGTGAGAGA
AGATTTACATATCAGTCAAGACCAACAGACCCTAAAAAGTACGTCACCCA
TAGAGGCggaaaataaaccaaaaacTGCTTCATCAGCGAAATTTGAGAAT
AAGAAGCAtgccaaaaatatttcaaaacggAAAACGAAGAAACTTATATT
CATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTC
CTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAAT
GAATGCCAAATCACGTACGACCGGACActtatcaaccaatcagatgcTAT
TTTCTTTGATGGACGTATAATACACGAGCTTGATatcgaaattttgaaaa
gactAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGATGCATGAG
AATCCAAATTTCACTTATTATAATATAACACAATATGACCAATTCTTCAA
CTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCTTATTTTG
GAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAA
ACTATGGGTCACCACAGTGTGACGCCTTTTACGTTTGGGCGTACATTAAC
GCCTGGGCATAAGGGCGgacaaaaaaaaacaccttCTCTTAAGCACCGAC
AATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTA
GTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATCCGGACATT
ACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAA
ATCCGGAGCTAGTGCAGTGTCACAGAGACAGCCCTGAATGTGAGGCTCTA
ATGAAACGATACAAATTTTATCTGGCGATTGAGAACTTCTACTGCACTGA
TTACGTGACTGAGAAATATTATCTAAATGGTTTAATTAGACATATTGTAC
CCATTGTGCTTAACGGTGGAAATTATAGTGACAATGAAAACGTATTTTTA
CCAAAGTCCTACATCAATATTGAGAAGTTCGATACATTGAAAAAACTTGG
CGAATACTTGAATTATCTTGATAAAAACGATACTGCTTATAACGAGTATC
ATCAATGGAGCTATGAGTATTCAGTTGAACCAAAACATTGCATGTGTAAA
GTTTGCAAAGCATTATGGGACCATGAAGAAATTgatagaccaatcaaaac
acTCAAATTATCCGATTTTTGGGATGCCGAGAAGTTATGTCAATCTTATG
ACAGGGAGAAGTTCCAGAAatatatttatataaaaaatgagACGACTCCA
AAAGCATAGggttaaaaaaaacttatattCATACCAATTTTTTAGATGAC
CATATTTATTCCCACCATATTTTTCCAAACGCTTTGGCTTggaatttttt
agtatttttcgaATCCGTATATGGAGCATATGGCagacaattttcttttg
ttagacTATTATAGACATCGCACCAAATTGGTGTTGCGATTTTTGTCATC
TCagagaagaagtcattgcattgttttttcgcgcgcgttctattttgcgc
caatcaaattgcgtc
Run BLAST on NCBI

protein sequence of TCONS_00071877-protein

>TCONS_00071877-protein ID=TCONS_00071877-protein|Name=TCONS_00071877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
NGLLDHLSTVLTTTHKIQVQRTEKHIQRKLTDVLKNSKKASTKTSGLVRE
DLHISQDQQTLKSTSPIEAENKPKTASSAKFENKKHAKNISKRKTKKLIF
ISLGLYNDRKEVMRSIPSDYNMTEMDGSKCPINECQITYDRTLINQSDAI
FFDGRIIHELDIEILKRLRSKSESQIWIWMMHENPNFTYYNITQYDQFFN
WSATYRPSSDIYIPYFGIQKLPPSQYLKQRDAQTMGHHSVTPFTFGRTLT
PGHKGGQKKTPSLKHRQLPYLKNFAEGKDKKVLVVISHCDEYRMQMIRTL
RQYIPVDLYGGCKDIINPELVQCHRDSPECEALMKRYKFYLAIENFYCTD
YVTEKYYLNGLIRHIVPIVLNGGNYSDNENVFLPKSYINIEKFDTLKKLG
EYLNYLDKNDTAYNEYHQWSYEYSVEPKHCMCKVCKALWDHEEIDRPIKT
LKLSDFWDAEKLCQSYDREKFQKYIYIKNETTPKA
Run BLAST on NCBI

transcript from alignment at scaffold_64:101921..107668-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071877 ID=TCONS_00071877|Name=TCONS_00071877|organism=Clytia hemisphaerica|type=transcript|length=5748bp|location=Sequence derived from alignment at scaffold_64:101921..107668- (Clytia hemisphaerica)
TAATGGGCTGCTGGACCATTTAAGTACTGTTCTCACTACAACTCACAAAA
TCCAAGTACAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTT
CTTAAGAATTCAAAGAAGGCGAGTACAAAAACATCTGGTTTAGTGAAGGA
AGATTTACATATCGTTCAAGACCAACAGACCCTAAAAAGTACGTCACCCA
TAGAGGCGGAAAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAAT
AAGAAGCATGCCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATATT
CATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTC
CTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAAT
GAATGCCAAATCACGTACGACCGGACACTTATCAACCAATCAGATGCTAT
TTTCTTTGATGGACGTATAATACACGAGCTTGATATCGAAATTTTGAAAA
GACTAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGATGCACGAG
AATCCAAATTTCACTTATTATAATATAACACAATATGACCAATTCTTCAA
CTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCTTATTTTG
GAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAA
ACTATGGGTCACCACAGTGTGACGCCTTTTACGATTGGGCGTACATTAAC
GCCTGGGCATAAGGGCGGACAAAGAAAAACACCTTCTCTTAAGCACCGAC
AATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAGAAAGTTCTA
GTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATTCGGACATT
ACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAA
ATCCGGAGCTAGTGCAGTGTCACAGAGACAGTCCTGAATGTGAGGCTCTA
ATGAAACGATACAAATTTTATCTGGCGATTGAGAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTACAGTGCATTTTGGG
ATGCTGAAAAACCCCACCCTTAAGTGCGGCACATGACGTAGGCCAGATCA
TATGAGTGACCCCCCCGGGTACAAAGGTTAAAAACCCCAGTGAGGATGGT
TTTGGAGTGCAATTTTTAAACATCCAATTTCGAGTGGGGATGAAATCAAA
GTCGATTTCCCAGTGGGGCTAAAATTCAAGGGTATTTTCCCGCCGGGGAC
AAAATTTTTGCTTAATTTTTCAGTGGGGCTGGGGTCCCAGCGGGTCTGTT
TAAGCAGTCGCTTGATTTTTCTGTTCTTTCAGATTTACAATATAAAGCTA
GGCAGTATTTTTACATACGGCGAAATAGTATTCACGGAACATAATTTAGC
GAAAACAACAAAAACTGATCGGAAATCAAATTTTCATTGGGCAATCGTTA
GGCCAGTGGTGGCAGTTATGGGTGAGCTACGGAGTATCTTGGTGACATTT
AGTTGTTTTATAATTATCTTAACATTGACACAATATAAAATGATCGAAGA
CATACTCTCTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATA
CGAAGAGACTTTTCTATGACGGTCTGAACACTGACAAATATCTCAGTCAA
ATGAGATCAAGCAAAAATGGTTTAGAACAGAAAAGAAATTGGGAAAGTAG
CTTACAGGCAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACC
GTACTGGGGAAGATTCTCCAGAGCTAGTTAACAAGGGAAGTGATGGGCTG
CTGGACAATTTAACTATTGTTCTCACTACAACTAACAAAATCCAAATACA
AAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATT
CAAAGACGGCGAGTAGAAAAACATCTGGTTTAGTGAGAGAAGATTTACAT
ATCAGTCAAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGGA
AAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCATG
CCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTTA
GGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATTA
TAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAAA
TCACGTACGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGAT
GGACGTATAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGATC
GAAATCAGAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAATT
TCACTTATTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGCT
ACCTATAGACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAAA
ACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGTC
ACCACAGTGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCAT
AAGGGCGGACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCATA
CTTGAAAAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATTT
CACATTGTGACGAATACCGTATGCAAATGATCCGGACATTACGCCAATAC
ATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGCT
AGTGCAGTGTCACAGAGACAGCCCTGAATGTGAGGCTCTAATGAAACGAT
ACAAATTTTATCTGGCGATTGAGAATTTTTACTGCACTGACTACGTGACT
GAGAAATATTATCTAAACNACACAATATAAAATGATCGAAGACATACTCT
CTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATACGAAGAGA
CTTTTCTATGATGGTCTGAACACTGGCAAATATCTCAGTCAAATGAGATC
AAGCACAAATGGTTTAGAACAGAAAAGAAATTGGGAAAGTAGCTTACAGA
CAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACCGTATTGGG
GAAGATTCTCCAGAGCTAGTTAACAAGGGGAGTAATGGGCTGCTGGACCA
TTTAAGTACTGTTCTCACTACAACTCACAAAATCCAAGTACAAAGAACAG
AGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGAAG
GCGAGTACAAAAACATCTGGTTTAGTGAAGGAAGATTTACATATCGTNTC
TCTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATACGAAGAG
ACTTTTCTATGACGGTCTGAACACTGACAAATATCTCAGTCAAATGAGAT
CAAGCAAAAATGGTTTAGAACAGAAAAGAAATTGGGAAAGTAGCTTACAG
GCAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACCGTACTGG
GGAAGATTCTCCAGAGCTAGTTAACAAGGGAAGTGATGGGCTGCTGGACA
ATTTAACTATTGTTCTCACTACAACTAACAAAATCCAAATACAAAGAACA
GAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGAC
GGCGAGTAGAAAAACATCTGGTTTAGTGAGAGAAGATTTACATATCAGTC
AAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGGAAAATAAA
CCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCATGCCAAAAA
TATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTTAGGACTTT
ACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATTATAACATG
ACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAAATCACGTA
CGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGATGGACGTA
TAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGATCGAAATCA
GAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAATTTCACTTA
TTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGCTACCTATA
GACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAAAACTCCCC
CCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGTCACCACAG
TGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCATAAGGGCG
GACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCATACTTGAAA
AACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATTTCACATTG
TGACGAATACCGTATGCAAATGATTCGGACATTACGCCAATACATACCTG
TCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGCTAGTGCAG
TGTCACAGAGACAGTCCTGAATGTGAGGCTCTAATGAAACGATACAAATT
TTATCTGGCGATTGAGAACTTCTACTGCACTGATTACGTGACTGAGAAAT
ATTATCTAAATGGTTTAATTAGACATATTGTACCCATTGTGCTTAACGGT
GGAAATTATAGTGACAATGAAAACGTATTTTTACCAAAGTCCTACATCAA
TATTGAGAAGTTCGATACATTGAAAAAACTTGGCGAATACTTGAATTATC
TTGATAAAAACGATACTGCTTATAACGAGTATCATCAATGGAGCTATGAG
TATTCAGTTGAACCAAAACATTGCATGTGTAAAGTTTGCAAAGCATTATG
GGACCATGAAGAAATTGATAGACCAATCAAAACACTCAAATTATCCGATT
TTTGGGATGCCGAGAAGTTATGTCAATCTTATGACAGGGAGAAGTTCCAG
AAATATATTTATATAAAAAATGAGACGACTCCAAAAGCATAGGGTTAAAA
AAAACTTATATTCATACCAATTTTTTAGATGACCATATTTATTCCCACCA
TATTTTTCCAAACGCTTTGGCTTGGAATTTTTTAGTATTTTTCGAATCCG
TATATGGAGCATATGGCAGACAATTTTCTTTTGTTAGACTATTATAGACA
TCGCACCAAATTGGTGTTGCGATTTTTGTCATCTCAGAGAAGAAGTCATT
GCATTGTTTTTTCGCGCGCGTTCTATTTTGCGCCAATCAAATTGCGTC

Coding sequence (CDS) from alignment at scaffold_64:101921..107668-

>TCONS_00071877 ID=TCONS_00071877|Name=TCONS_00071877|organism=Clytia hemisphaerica|type=CDS|length=4374bp|location=Sequence derived from alignment at scaffold_64:101921..107668- (Clytia hemisphaerica)
GCTCTAATGAAACGATACAAATTTTATCTGGCGATTGAGAACTTCTACTG
CACTGATTACGTGACTGAGAAATATTATCTAAATGGTTTAATTAGACATA
TTGTACCCATTGTGCTTAACGGTGGAAATTATAGTGACAATGAAAACGTA
TTTTTACCAAAGTCCTACATCAATATTGAGAAGTTCGATACATTGAAAAA
ACTTGGCGAATACTTGAATTATCTTGATAAAAACGATACTGCTTATAACG
AGTATCATCAATGGAGCTATGAGTATTCAGTTGAACCAAAACATTGCATG
TGTAAAGTTTGCAAAGCATTATGGGACCATGAAGAAATTGATAGACCAAT
CAAAACACTCAAATTATCCGATTTTTGGGATGCCGAGAAGTTATGTCAAT
CTTATGACAGGGAGAAGTTCCAGAAATATATTTATATAAAAAATGAGACG
ACTCCAAAAGCATAGATCTGGTTTAGTGAGAGAAGATTTACATATCAGTC
AAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGGAAAATAAA
CCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCATGCCAAAAA
TATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTTAGGACTTT
ACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATTATAACATG
ACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAAATCACGTA
CGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGATGGACGTA
TAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGATCGAAATCA
GAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAATTTCACTTA
TTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGCTACCTATA
GACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAAAACTCCCC
CCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGTCACCACAG
TGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCATAAGGGCG
GACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCATACTTGAAA
AACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATTTCACATTG
TGACGAATACCGTATGCAAATGATCCGGACATTACGCCAATACATACCTG
TCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGCTAGTGCAG
TGTCACAGAGACAGCCCTGAATGTGAGAATGGGCTGCTGGACCATTTAAG
TACTGTTCTCACTACAACTCACAAAATCCAAGTACAAAGAACAGAGAAAC
ATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGAAGGCGAGT
ACAAAAACGCTCTAATGAAACGATACAAATTTTATCTGGCGATTGAGAAC
TTCTACTGCACTGATTACGTGACTGAGAAATATTATCTAAATGGTTTAAT
TAGACATATTGTACCCATTGTGCTTAACGGTGGAAATTATAGTGACAATG
AAAACGTATTTTTACCAAAGTCCTACATCAATATTGAGAAGTTCGATACA
TTGAAAAAACTTGGCGAATACTTGAATTATCTTGATAAAAACGATACTGC
TTATAACGAGTATCATCAATGGAGCTATGAGTATTCAGTTGAACCAAAAC
ATTGCATGTGTAAAGTTTGCAAAGCATTATGGGACCATGAAGAAATTGAT
AGACCAATCAAAACACTCAAATTATCCGATTTTTGGGATGCCGAGAAGTT
ATGTCAATCTTATGACAGGGAGAAGTTCCAGAAATATATTTATATAAAAA
ATGAGACGACTCCAAAAGCATAGATCTGGTTTAGTGAGAGAAGATTTACA
TATCAGTCAAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGG
AAAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCAT
GCCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTT
AGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATT
ATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAA
ATCACGTACGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGA
TGGACGTATAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGAT
CGAAATCAGAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAAT
TTCACTTATTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGC
TACCTATAGACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAA
AACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGT
CACCACAGTGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCA
TAAGGGCGGACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCAT
ACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATT
TCACATTGTGACGAATACCGTATGCAAATGATCCGGACATTACGCCAATA
CATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGC
TAGTGCAGTGTCACAGAGACAGCCCTGAATGTGAGAATGGGCTGCTGGAC
CATTTAAGTACTGTTCTCACTACAACTCACAAAATCCAAGTACAAAGAAC
AGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGA
AGGCGAGTACAAAAACGCTCTAATGAAACGATACAAATTTTATCTGGCGA
TTGAGAACTTCTACTGCACTGATTACGTGACTGAGAAATATTATCTAAAT
GGTTTAATTAGACATATTGTACCCATTGTGCTTAACGGTGGAAATTATAG
TGACAATGAAAACGTATTTTTACCAAAGTCCTACATCAATATTGAGAAGT
TCGATACATTGAAAAAACTTGGCGAATACTTGAATTATCTTGATAAAAAC
GATACTGCTTATAACGAGTATCATCAATGGAGCTATGAGTATTCAGTTGA
ACCAAAACATTGCATGTGTAAAGTTTGCAAAGCATTATGGGACCATGAAG
AAATTGATAGACCAATCAAAACACTCAAATTATCCGATTTTTGGGATGCC
GAGAAGTTATGTCAATCTTATGACAGGGAGAAGTTCCAGAAATATATTTA
TATAAAAAATGAGACGACTCCAAAAGCATAGATCTGGTTTAGTGAGAGAA
GATTTACATATCAGTCAAGACCAACAGACCCTAAAAAGTACGTCACCCAT
AGAGGCGGAAAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAATA
AGAAGCATGCCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATATTC
ATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTCC
TTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAATG
AATGCCAAATCACGTACGACCGGACACTTATCAACCAATCAGATGCTATT
TTCTTTGATGGACGTATAATACACGAGCTTGATATCGAAATTTTGAAAAG
ACTAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGATGCATGAGA
ATCCAAATTTCACTTATTATAATATAACACAATATGACCAATTCTTCAAC
TGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCTTATTTTGG
AATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAAA
CTATGGGTCACCACAGTGTGACGCCTTTTACGTTTGGGCGTACATTAACG
CCTGGGCATAAGGGCGGACAAAAAAAAACACCTTCTCTTAAGCACCGACA
ATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAG
TAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATCCGGACATTA
CGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAAA
TCCGGAGCTAGTGCAGTGTCACAGAGACAGCCCTGAATGTGAGAATGGGC
TGCTGGACCATTTAAGTACTGTTCTCACTACAACTCACAAAATCCAAGTA
CAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAA
TTCAAAGAAGGCGAGTACAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044618XLOC_044618Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071877-proteinTCONS_00071877-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071877-exon-scaffold_64-1575043694:107537..107668TCONS_00071877-exon-scaffold_64-1575043694:107537..107668Clytia hemisphaericaexon
TCONS_00071877-exon-scaffold_64-1575043694:104385..105246TCONS_00071877-exon-scaffold_64-1575043694:104385..105246Clytia hemisphaericaexon
TCONS_00071877-exon-scaffold_64-1575043694:101921..102641TCONS_00071877-exon-scaffold_64-1575043694:101921..102641Clytia hemisphaericaexon
TCONS_00071877-exon-scaffold_64-1510915933:107537..107668TCONS_00071877-exon-scaffold_64-1510915933:107537..107668Clytia hemisphaericaexon
TCONS_00071877-exon-scaffold_64-1510915933:104385..105246TCONS_00071877-exon-scaffold_64-1510915933:104385..105246Clytia hemisphaericaexon
TCONS_00071877-exon-scaffold_64-1510915933:101921..102641TCONS_00071877-exon-scaffold_64-1510915933:101921..102641Clytia hemisphaericaexon
TCONS_00071877-exon-scaffold_64-1491911889:107537..107668TCONS_00071877-exon-scaffold_64-1491911889:107537..107668Clytia hemisphaericaexon
TCONS_00071877-exon-scaffold_64-1491911889:104385..105246TCONS_00071877-exon-scaffold_64-1491911889:104385..105246Clytia hemisphaericaexon
TCONS_00071877-exon-scaffold_64-1491911889:101921..102641TCONS_00071877-exon-scaffold_64-1491911889:101921..102641Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:101921..107668 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141346	0.0689171	0	0	0	0	0	0.553693	0.505221	0.208685	1.19558	0.147418	0.16611	0	0	0.0287107	0.355013	0.0976817	0.227132	0.182142	0	0	0.135053	0.0909451	0.0103495	0	0.0646043	0.0344737	0.130735	0.0799193
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR031481Glyco_tran_10_N
IPR001503Glyco_trans_10
Vocabulary: Molecular Function
TermDefinition
GO:0008417fucosyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008417 fucosyltransferase activity
Blast
[Close]
BLAST of TCONS_00071877 vs. Swiss-Prot (Human)
Match: FUT4 (Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens GN=FUT4 PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 6.494e-27
Identity = 96/366 (26.23%), Postives = 146/366 (39.89%), Query Frame = 2 
Query:  395 INECQITYDRTLINQSDAIFFDGR------------------IIHELDIEIL------------KRLRSKSESQIWIWMMHENPNFTYYNITQYDQFFNWSATYRPSSDIYIPYFGIQKLPPSQYLKQRDAQTMGHHSVTPFTFGRTLTPGHKGGQKKTPSLKHRQLPYLKNFAEGKDKKVLVVISHCDE--YRMQMIRTLRQYIPVDLYG-GCKDIINPELVQCHRDSPECEALMKRYKFYLAIENFYCTDYVTEKYYLNGLIRHIVPIVLNGGNYSDNENVFLPK-SYINIEKFDTLKKLGEYLNYLDKNDTAYNEYHQWSYEYSV-------EPKHCMCKVCKALWDHEEIDRPIKTLKLSDF 1369
            I+ C++  DR    ++ A+ F  R                     E+D+ +L                 +   Q W+WM  E+P+ +    +     FNW+ +YR  SD+++PY          YL  R      H    P                  P L  +Q              V  V+SH DE   R++    L Q++ VD++G G      PE+   H         + RYKFYLA EN    DY+TEK + N L+   VP+VL  G    N   F+P+ ++I+++ F +   L  YL +LD+N   Y  Y  W   Y+V       EP    C+VC+A+      DRP     L+ +
Sbjct:  217 ISGCRLLTDRASYGEAQAVLFHHRDLVKGPPDWPPPWGIQAHTAEEVDLRVLDYEEAAAAAEALATSSPRPPGQRWVWMNFESPSHSPGLRSLASNLFNWTLSYRADSDVFVPY---------GYLYPRS-----HPGDPPSGL--------------APPLSRKQ------------GLVAWVVSHWDERQARVRYYHQLSQHVTVDVFGRGGPGQPVPEIGLLH--------TVARYKFYLAFENSQHLDYITEKLWRNALLAGAVPVVL--GPDRANYERFVPRGAFIHVDDFPSASSLASYLLFLDRNPAVYRRYFHWRRSYAVHITSFWDEP---WCRVCQAV--QRAGDRPKSIRNLASW 527
The following BLAST results are available for this feature:
BLAST of TCONS_00071877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FUT46.494e-2726.23Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens G... [more]
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