Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071877 ID=TCONS_00071877|Name=TCONS_00071877|organism=Clytia hemisphaerica|type=transcript|length=1715bp
TAATGGGCTGCTGGACCATTTAAGTACTGTTCTCACTACAACTCACAAAA
TCCAAGTACAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTT
CTTAAGAATTCAAAGAAGGCGAGTACAAAAACATCTGGTTTAGTGAGAGA
AGATTTACATATCAGTCAAGACCAACAGACCCTAAAAAGTACGTCACCCA
TAGAGGCggaaaataaaccaaaaacTGCTTCATCAGCGAAATTTGAGAAT
AAGAAGCAtgccaaaaatatttcaaaacggAAAACGAAGAAACTTATATT
CATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTC
CTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAAT
GAATGCCAAATCACGTACGACCGGACActtatcaaccaatcagatgcTAT
TTTCTTTGATGGACGTATAATACACGAGCTTGATatcgaaattttgaaaa
gactAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGATGCATGAG
AATCCAAATTTCACTTATTATAATATAACACAATATGACCAATTCTTCAA
CTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCTTATTTTG
GAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAA
ACTATGGGTCACCACAGTGTGACGCCTTTTACGTTTGGGCGTACATTAAC
GCCTGGGCATAAGGGCGgacaaaaaaaaacaccttCTCTTAAGCACCGAC
AATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTA
GTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATCCGGACATT
ACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAA
ATCCGGAGCTAGTGCAGTGTCACAGAGACAGCCCTGAATGTGAGGCTCTA
ATGAAACGATACAAATTTTATCTGGCGATTGAGAACTTCTACTGCACTGA
TTACGTGACTGAGAAATATTATCTAAATGGTTTAATTAGACATATTGTAC
CCATTGTGCTTAACGGTGGAAATTATAGTGACAATGAAAACGTATTTTTA
CCAAAGTCCTACATCAATATTGAGAAGTTCGATACATTGAAAAAACTTGG
CGAATACTTGAATTATCTTGATAAAAACGATACTGCTTATAACGAGTATC
ATCAATGGAGCTATGAGTATTCAGTTGAACCAAAACATTGCATGTGTAAA
GTTTGCAAAGCATTATGGGACCATGAAGAAATTgatagaccaatcaaaac
acTCAAATTATCCGATTTTTGGGATGCCGAGAAGTTATGTCAATCTTATG
ACAGGGAGAAGTTCCAGAAatatatttatataaaaaatgagACGACTCCA
AAAGCATAGggttaaaaaaaacttatattCATACCAATTTTTTAGATGAC
CATATTTATTCCCACCATATTTTTCCAAACGCTTTGGCTTggaatttttt
agtatttttcgaATCCGTATATGGAGCATATGGCagacaattttcttttg
ttagacTATTATAGACATCGCACCAAATTGGTGTTGCGATTTTTGTCATC
TCagagaagaagtcattgcattgttttttcgcgcgcgttctattttgcgc
caatcaaattgcgtc Run BLAST on NCBI protein sequence of TCONS_00071877-protein >TCONS_00071877-protein ID=TCONS_00071877-protein|Name=TCONS_00071877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
NGLLDHLSTVLTTTHKIQVQRTEKHIQRKLTDVLKNSKKASTKTSGLVRE
DLHISQDQQTLKSTSPIEAENKPKTASSAKFENKKHAKNISKRKTKKLIF
ISLGLYNDRKEVMRSIPSDYNMTEMDGSKCPINECQITYDRTLINQSDAI
FFDGRIIHELDIEILKRLRSKSESQIWIWMMHENPNFTYYNITQYDQFFN
WSATYRPSSDIYIPYFGIQKLPPSQYLKQRDAQTMGHHSVTPFTFGRTLT
PGHKGGQKKTPSLKHRQLPYLKNFAEGKDKKVLVVISHCDEYRMQMIRTL
RQYIPVDLYGGCKDIINPELVQCHRDSPECEALMKRYKFYLAIENFYCTD
YVTEKYYLNGLIRHIVPIVLNGGNYSDNENVFLPKSYINIEKFDTLKKLG
EYLNYLDKNDTAYNEYHQWSYEYSVEPKHCMCKVCKALWDHEEIDRPIKT
LKLSDFWDAEKLCQSYDREKFQKYIYIKNETTPKA Run BLAST on NCBI transcript from alignment at scaffold_64:101921..107668- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071877 ID=TCONS_00071877|Name=TCONS_00071877|organism=Clytia hemisphaerica|type=transcript|length=5748bp|location=Sequence derived from alignment at scaffold_64:101921..107668- (Clytia hemisphaerica)
TAATGGGCTGCTGGACCATTTAAGTACTGTTCTCACTACAACTCACAAAA
TCCAAGTACAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTT
CTTAAGAATTCAAAGAAGGCGAGTACAAAAACATCTGGTTTAGTGAAGGA
AGATTTACATATCGTTCAAGACCAACAGACCCTAAAAAGTACGTCACCCA
TAGAGGCGGAAAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAAT
AAGAAGCATGCCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATATT
CATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTC
CTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAAT
GAATGCCAAATCACGTACGACCGGACACTTATCAACCAATCAGATGCTAT
TTTCTTTGATGGACGTATAATACACGAGCTTGATATCGAAATTTTGAAAA
GACTAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGATGCACGAG
AATCCAAATTTCACTTATTATAATATAACACAATATGACCAATTCTTCAA
CTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCTTATTTTG
GAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAA
ACTATGGGTCACCACAGTGTGACGCCTTTTACGATTGGGCGTACATTAAC
GCCTGGGCATAAGGGCGGACAAAGAAAAACACCTTCTCTTAAGCACCGAC
AATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAGAAAGTTCTA
GTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATTCGGACATT
ACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAA
ATCCGGAGCTAGTGCAGTGTCACAGAGACAGTCCTGAATGTGAGGCTCTA
ATGAAACGATACAAATTTTATCTGGCGATTGAGAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTACAGTGCATTTTGGG
ATGCTGAAAAACCCCACCCTTAAGTGCGGCACATGACGTAGGCCAGATCA
TATGAGTGACCCCCCCGGGTACAAAGGTTAAAAACCCCAGTGAGGATGGT
TTTGGAGTGCAATTTTTAAACATCCAATTTCGAGTGGGGATGAAATCAAA
GTCGATTTCCCAGTGGGGCTAAAATTCAAGGGTATTTTCCCGCCGGGGAC
AAAATTTTTGCTTAATTTTTCAGTGGGGCTGGGGTCCCAGCGGGTCTGTT
TAAGCAGTCGCTTGATTTTTCTGTTCTTTCAGATTTACAATATAAAGCTA
GGCAGTATTTTTACATACGGCGAAATAGTATTCACGGAACATAATTTAGC
GAAAACAACAAAAACTGATCGGAAATCAAATTTTCATTGGGCAATCGTTA
GGCCAGTGGTGGCAGTTATGGGTGAGCTACGGAGTATCTTGGTGACATTT
AGTTGTTTTATAATTATCTTAACATTGACACAATATAAAATGATCGAAGA
CATACTCTCTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATA
CGAAGAGACTTTTCTATGACGGTCTGAACACTGACAAATATCTCAGTCAA
ATGAGATCAAGCAAAAATGGTTTAGAACAGAAAAGAAATTGGGAAAGTAG
CTTACAGGCAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACC
GTACTGGGGAAGATTCTCCAGAGCTAGTTAACAAGGGAAGTGATGGGCTG
CTGGACAATTTAACTATTGTTCTCACTACAACTAACAAAATCCAAATACA
AAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATT
CAAAGACGGCGAGTAGAAAAACATCTGGTTTAGTGAGAGAAGATTTACAT
ATCAGTCAAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGGA
AAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCATG
CCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTTA
GGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATTA
TAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAAA
TCACGTACGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGAT
GGACGTATAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGATC
GAAATCAGAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAATT
TCACTTATTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGCT
ACCTATAGACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAAA
ACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGTC
ACCACAGTGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCAT
AAGGGCGGACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCATA
CTTGAAAAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATTT
CACATTGTGACGAATACCGTATGCAAATGATCCGGACATTACGCCAATAC
ATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGCT
AGTGCAGTGTCACAGAGACAGCCCTGAATGTGAGGCTCTAATGAAACGAT
ACAAATTTTATCTGGCGATTGAGAATTTTTACTGCACTGACTACGTGACT
GAGAAATATTATCTAAACNACACAATATAAAATGATCGAAGACATACTCT
CTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATACGAAGAGA
CTTTTCTATGATGGTCTGAACACTGGCAAATATCTCAGTCAAATGAGATC
AAGCACAAATGGTTTAGAACAGAAAAGAAATTGGGAAAGTAGCTTACAGA
CAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACCGTATTGGG
GAAGATTCTCCAGAGCTAGTTAACAAGGGGAGTAATGGGCTGCTGGACCA
TTTAAGTACTGTTCTCACTACAACTCACAAAATCCAAGTACAAAGAACAG
AGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGAAG
GCGAGTACAAAAACATCTGGTTTAGTGAAGGAAGATTTACATATCGTNTC
TCTAAGAAGAGTAGAGCACAGGATGACAGTGCAACGTCGAATACGAAGAG
ACTTTTCTATGACGGTCTGAACACTGACAAATATCTCAGTCAAATGAGAT
CAAGCAAAAATGGTTTAGAACAGAAAAGAAATTGGGAAAGTAGCTTACAG
GCAGTTCACCACAATTCGAAGACTTTAGAGAAACTACTTAACCGTACTGG
GGAAGATTCTCCAGAGCTAGTTAACAAGGGAAGTGATGGGCTGCTGGACA
ATTTAACTATTGTTCTCACTACAACTAACAAAATCCAAATACAAAGAACA
GAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGAC
GGCGAGTAGAAAAACATCTGGTTTAGTGAGAGAAGATTTACATATCAGTC
AAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGGAAAATAAA
CCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCATGCCAAAAA
TATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTTAGGACTTT
ACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATTATAACATG
ACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAAATCACGTA
CGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGATGGACGTA
TAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGATCGAAATCA
GAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAATTTCACTTA
TTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGCTACCTATA
GACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAAAACTCCCC
CCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGTCACCACAG
TGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCATAAGGGCG
GACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCATACTTGAAA
AACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATTTCACATTG
TGACGAATACCGTATGCAAATGATTCGGACATTACGCCAATACATACCTG
TCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGCTAGTGCAG
TGTCACAGAGACAGTCCTGAATGTGAGGCTCTAATGAAACGATACAAATT
TTATCTGGCGATTGAGAACTTCTACTGCACTGATTACGTGACTGAGAAAT
ATTATCTAAATGGTTTAATTAGACATATTGTACCCATTGTGCTTAACGGT
GGAAATTATAGTGACAATGAAAACGTATTTTTACCAAAGTCCTACATCAA
TATTGAGAAGTTCGATACATTGAAAAAACTTGGCGAATACTTGAATTATC
TTGATAAAAACGATACTGCTTATAACGAGTATCATCAATGGAGCTATGAG
TATTCAGTTGAACCAAAACATTGCATGTGTAAAGTTTGCAAAGCATTATG
GGACCATGAAGAAATTGATAGACCAATCAAAACACTCAAATTATCCGATT
TTTGGGATGCCGAGAAGTTATGTCAATCTTATGACAGGGAGAAGTTCCAG
AAATATATTTATATAAAAAATGAGACGACTCCAAAAGCATAGGGTTAAAA
AAAACTTATATTCATACCAATTTTTTAGATGACCATATTTATTCCCACCA
TATTTTTCCAAACGCTTTGGCTTGGAATTTTTTAGTATTTTTCGAATCCG
TATATGGAGCATATGGCAGACAATTTTCTTTTGTTAGACTATTATAGACA
TCGCACCAAATTGGTGTTGCGATTTTTGTCATCTCAGAGAAGAAGTCATT
GCATTGTTTTTTCGCGCGCGTTCTATTTTGCGCCAATCAAATTGCGTC Coding sequence (CDS) from alignment at scaffold_64:101921..107668- >TCONS_00071877 ID=TCONS_00071877|Name=TCONS_00071877|organism=Clytia hemisphaerica|type=CDS|length=4374bp|location=Sequence derived from alignment at scaffold_64:101921..107668- (Clytia hemisphaerica)
GCTCTAATGAAACGATACAAATTTTATCTGGCGATTGAGAACTTCTACTG
CACTGATTACGTGACTGAGAAATATTATCTAAATGGTTTAATTAGACATA
TTGTACCCATTGTGCTTAACGGTGGAAATTATAGTGACAATGAAAACGTA
TTTTTACCAAAGTCCTACATCAATATTGAGAAGTTCGATACATTGAAAAA
ACTTGGCGAATACTTGAATTATCTTGATAAAAACGATACTGCTTATAACG
AGTATCATCAATGGAGCTATGAGTATTCAGTTGAACCAAAACATTGCATG
TGTAAAGTTTGCAAAGCATTATGGGACCATGAAGAAATTGATAGACCAAT
CAAAACACTCAAATTATCCGATTTTTGGGATGCCGAGAAGTTATGTCAAT
CTTATGACAGGGAGAAGTTCCAGAAATATATTTATATAAAAAATGAGACG
ACTCCAAAAGCATAGATCTGGTTTAGTGAGAGAAGATTTACATATCAGTC
AAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGGAAAATAAA
CCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCATGCCAAAAA
TATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTTAGGACTTT
ACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATTATAACATG
ACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAAATCACGTA
CGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGATGGACGTA
TAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGATCGAAATCA
GAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAATTTCACTTA
TTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGCTACCTATA
GACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAAAACTCCCC
CCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGTCACCACAG
TGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCATAAGGGCG
GACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCATACTTGAAA
AACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATTTCACATTG
TGACGAATACCGTATGCAAATGATCCGGACATTACGCCAATACATACCTG
TCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGCTAGTGCAG
TGTCACAGAGACAGCCCTGAATGTGAGAATGGGCTGCTGGACCATTTAAG
TACTGTTCTCACTACAACTCACAAAATCCAAGTACAAAGAACAGAGAAAC
ATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGAAGGCGAGT
ACAAAAACGCTCTAATGAAACGATACAAATTTTATCTGGCGATTGAGAAC
TTCTACTGCACTGATTACGTGACTGAGAAATATTATCTAAATGGTTTAAT
TAGACATATTGTACCCATTGTGCTTAACGGTGGAAATTATAGTGACAATG
AAAACGTATTTTTACCAAAGTCCTACATCAATATTGAGAAGTTCGATACA
TTGAAAAAACTTGGCGAATACTTGAATTATCTTGATAAAAACGATACTGC
TTATAACGAGTATCATCAATGGAGCTATGAGTATTCAGTTGAACCAAAAC
ATTGCATGTGTAAAGTTTGCAAAGCATTATGGGACCATGAAGAAATTGAT
AGACCAATCAAAACACTCAAATTATCCGATTTTTGGGATGCCGAGAAGTT
ATGTCAATCTTATGACAGGGAGAAGTTCCAGAAATATATTTATATAAAAA
ATGAGACGACTCCAAAAGCATAGATCTGGTTTAGTGAGAGAAGATTTACA
TATCAGTCAAGACCAACAGACCCTAAAAAGTACGTCACCCATAGAGGCGG
AAAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAATAAGAAGCAT
GCCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATATTCATATCGTT
AGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTCCTTCCGATT
ATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAATGAATGCCAA
ATCACGTACGACCGGACACTTATCAACCAATCAGATGCTATTTTCTTTGA
TGGACGTATAATACACGAGCTTGATATCGAAATTTTGAAAAGACTAAGAT
CGAAATCAGAATCTCAAATTTGGATCTGGATGATGCATGAGAATCCAAAT
TTCACTTATTATAATATAACACAATATGACCAATTCTTCAACTGGTCAGC
TACCTATAGACCTTCATCTGATATCTACATACCTTATTTTGGAATCCAAA
AACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAAACTATGGGT
CACCACAGTGTGACGCCTTTTACGTTTGGGCGTACATTAACGCCTGGGCA
TAAGGGCGGACAAAAAAAAACACCTTCTCTTAAGCACCGACAATTGCCAT
ACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAGTAGTTATT
TCACATTGTGACGAATACCGTATGCAAATGATCCGGACATTACGCCAATA
CATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAAATCCGGAGC
TAGTGCAGTGTCACAGAGACAGCCCTGAATGTGAGAATGGGCTGCTGGAC
CATTTAAGTACTGTTCTCACTACAACTCACAAAATCCAAGTACAAAGAAC
AGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAATTCAAAGA
AGGCGAGTACAAAAACGCTCTAATGAAACGATACAAATTTTATCTGGCGA
TTGAGAACTTCTACTGCACTGATTACGTGACTGAGAAATATTATCTAAAT
GGTTTAATTAGACATATTGTACCCATTGTGCTTAACGGTGGAAATTATAG
TGACAATGAAAACGTATTTTTACCAAAGTCCTACATCAATATTGAGAAGT
TCGATACATTGAAAAAACTTGGCGAATACTTGAATTATCTTGATAAAAAC
GATACTGCTTATAACGAGTATCATCAATGGAGCTATGAGTATTCAGTTGA
ACCAAAACATTGCATGTGTAAAGTTTGCAAAGCATTATGGGACCATGAAG
AAATTGATAGACCAATCAAAACACTCAAATTATCCGATTTTTGGGATGCC
GAGAAGTTATGTCAATCTTATGACAGGGAGAAGTTCCAGAAATATATTTA
TATAAAAAATGAGACGACTCCAAAAGCATAGATCTGGTTTAGTGAGAGAA
GATTTACATATCAGTCAAGACCAACAGACCCTAAAAAGTACGTCACCCAT
AGAGGCGGAAAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAATA
AGAAGCATGCCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATATTC
ATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATTCC
TTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAATG
AATGCCAAATCACGTACGACCGGACACTTATCAACCAATCAGATGCTATT
TTCTTTGATGGACGTATAATACACGAGCTTGATATCGAAATTTTGAAAAG
ACTAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGATGCATGAGA
ATCCAAATTTCACTTATTATAATATAACACAATATGACCAATTCTTCAAC
TGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCTTATTTTGG
AATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACAAA
CTATGGGTCACCACAGTGTGACGCCTTTTACGTTTGGGCGTACATTAACG
CCTGGGCATAAGGGCGGACAAAAAAAAACACCTTCTCTTAAGCACCGACA
ATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAAAAAGTTCTAG
TAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATCCGGACATTA
CGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATAAA
TCCGGAGCTAGTGCAGTGTCACAGAGACAGCCCTGAATGTGAGAATGGGC
TGCTGGACCATTTAAGTACTGTTCTCACTACAACTCACAAAATCCAAGTA
CAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGTTCTTAAGAA
TTCAAAGAAGGCGAGTACAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071877-exon-scaffold_64-1575043694:107537..107668 | TCONS_00071877-exon-scaffold_64-1575043694:107537..107668 | Clytia hemisphaerica | exon |
| TCONS_00071877-exon-scaffold_64-1575043694:104385..105246 | TCONS_00071877-exon-scaffold_64-1575043694:104385..105246 | Clytia hemisphaerica | exon |
| TCONS_00071877-exon-scaffold_64-1575043694:101921..102641 | TCONS_00071877-exon-scaffold_64-1575043694:101921..102641 | Clytia hemisphaerica | exon |
| TCONS_00071877-exon-scaffold_64-1510915933:107537..107668 | TCONS_00071877-exon-scaffold_64-1510915933:107537..107668 | Clytia hemisphaerica | exon |
| TCONS_00071877-exon-scaffold_64-1510915933:104385..105246 | TCONS_00071877-exon-scaffold_64-1510915933:104385..105246 | Clytia hemisphaerica | exon |
| TCONS_00071877-exon-scaffold_64-1510915933:101921..102641 | TCONS_00071877-exon-scaffold_64-1510915933:101921..102641 | Clytia hemisphaerica | exon |
| TCONS_00071877-exon-scaffold_64-1491911889:107537..107668 | TCONS_00071877-exon-scaffold_64-1491911889:107537..107668 | Clytia hemisphaerica | exon |
| TCONS_00071877-exon-scaffold_64-1491911889:104385..105246 | TCONS_00071877-exon-scaffold_64-1491911889:104385..105246 | Clytia hemisphaerica | exon |
| TCONS_00071877-exon-scaffold_64-1491911889:101921..102641 | TCONS_00071877-exon-scaffold_64-1491911889:101921..102641 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:101921..107668 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008417 | fucosyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008417 |
fucosyltransferase activity |
Blast
BLAST of TCONS_00071877 vs. Swiss-Prot (Human)
Match: FUT4 (Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens GN=FUT4 PE=2 SV=3) HSP 1 Score: 114.775 bits (286), Expect = 6.494e-27 Identity = 96/366 (26.23%), Postives = 146/366 (39.89%), Query Frame = 2 Query: 395 INECQITYDRTLINQSDAIFFDGR------------------IIHELDIEIL------------KRLRSKSESQIWIWMMHENPNFTYYNITQYDQFFNWSATYRPSSDIYIPYFGIQKLPPSQYLKQRDAQTMGHHSVTPFTFGRTLTPGHKGGQKKTPSLKHRQLPYLKNFAEGKDKKVLVVISHCDE--YRMQMIRTLRQYIPVDLYG-GCKDIINPELVQCHRDSPECEALMKRYKFYLAIENFYCTDYVTEKYYLNGLIRHIVPIVLNGGNYSDNENVFLPK-SYINIEKFDTLKKLGEYLNYLDKNDTAYNEYHQWSYEYSV-------EPKHCMCKVCKALWDHEEIDRPIKTLKLSDF 1369
I+ C++ DR ++ A+ F R E+D+ +L + Q W+WM E+P+ + + FNW+ +YR SD+++PY YL R H P P L +Q V V+SH DE R++ L Q++ VD++G G PE+ H + RYKFYLA EN DY+TEK + N L+ VP+VL G N F+P+ ++I+++ F + L YL +LD+N Y Y W Y+V EP C+VC+A+ DRP L+ +
Sbjct: 217 ISGCRLLTDRASYGEAQAVLFHHRDLVKGPPDWPPPWGIQAHTAEEVDLRVLDYEEAAAAAEALATSSPRPPGQRWVWMNFESPSHSPGLRSLASNLFNWTLSYRADSDVFVPY---------GYLYPRS-----HPGDPPSGL--------------APPLSRKQ------------GLVAWVVSHWDERQARVRYYHQLSQHVTVDVFGRGGPGQPVPEIGLLH--------TVARYKFYLAFENSQHLDYITEKLWRNALLAGAVPVVL--GPDRANYERFVPRGAFIHVDDFPSASSLASYLLFLDRNPAVYRRYFHWRRSYAVHITSFWDEP---WCRVCQAV--QRAGDRPKSIRNLASW 527
The following BLAST results are available for this feature:
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