TCONS_00071878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071878
Unique NameTCONS_00071878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071878 ID=TCONS_00071878|Name=TCONS_00071878|organism=Clytia hemisphaerica|type=transcript|length=1436bp
CATAATTTAgcgaaaacaacaaaaactgatcggaaatcaaattttcattg
gGCAATCGTTAGGCCAGTGGTGGCAGTTATGGGTGAGCTACGGAGTATCT
TGGTGACATTTAGTTGTTTTATAATTATCTTAACATTGACACAATATAAA
ATGATCGAAGACATACTCTCTAAGAAGAGTAGAGCACAGGATGACAGTGC
AACGTCGAATACGAAGAGACTTTTCTATGATGGTCTGAACACTGGCAAAT
ATCTCAGTCAAATGAGATCAAGCACAAATGGTTTAGAACAGAAAAGAAAT
TGGGAAAGTAGCTTACAGACAGTTCACCACAATTCGAAGACTTTAGAGAA
ACTACTTAACCGTATTGGGGAAGATTCTCCAGAGCTAGTTAACAAGGGGA
GTAATGGGCTGCTGGACCATTTAAGTACTGTTCTCACTACAACTCACAAA
ATCCAAGTACAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGT
TCTTAAGAATTCAAAGAAGGCGAGTACAAAAACATCTGGTTTAGTGAAGG
AAGATTTACATATCGTTCAAGACCAACAGACCCTAAAAAGTACGTCACCC
ATAGAGGCggaaaataaaccaaaaacTGCTTCATCAGCGAAATTTGAGAA
TAAGAAGCAtgccaaaaatatttcaaaacggAAAACGAAGAAACTTATAT
TCATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATT
CCTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAA
TGAATGCCAAATCACGTACGACCGGACActtatcaaccaatcagatgcTA
TTTTCTTTGATGGACGTATAATACACGAGCTTGATatcgaaattttgaaa
agactAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGATGCACGA
GAATCCAAATTTCACTTATTATAATATAACACAATATGACCAATTCTTCA
ACTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCTTATTTT
GGAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACA
AACTATGGGTCACCACAGTGTGACGCCTTTTACGATTGGGCGTACATTAA
CGCCTGGGCATAAGGGCGGACAAAGAAAAACACCTTCTCTTAAGCACCGA
CAATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAGAAAGTTCT
AGTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATTCGGACAT
TACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATA
AATCCGGAGCTAGTGCAGTGTCACAGAGACAGTCCTGAATGTGAGGCTCT
AATGAAACGATACAAATTTTATCTGGCGATTGAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_64:106634..108069-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071878 ID=TCONS_00071878|Name=TCONS_00071878|organism=Clytia hemisphaerica|type=transcript|length=1436bp|location=Sequence derived from alignment at scaffold_64:106634..108069- (Clytia hemisphaerica)
CATAATTTAGCGAAAACAACAAAAACTGATCGGAAATCAAATTTTCATTG
GGCAATCGTTAGGCCAGTGGTGGCAGTTATGGGTGAGCTACGGAGTATCT
TGGTGACATTTAGTTGTTTTATAATTATCTTAACATTGACACAATATAAA
ATGATCGAAGACATACTCTCTAAGAAGAGTAGAGCACAGGATGACAGTGC
AACGTCGAATACGAAGAGACTTTTCTATGATGGTCTGAACACTGGCAAAT
ATCTCAGTCAAATGAGATCAAGCACAAATGGTTTAGAACAGAAAAGAAAT
TGGGAAAGTAGCTTACAGACAGTTCACCACAATTCGAAGACTTTAGAGAA
ACTACTTAACCGTATTGGGGAAGATTCTCCAGAGCTAGTTAACAAGGGGA
GTAATGGGCTGCTGGACCATTTAAGTACTGTTCTCACTACAACTCACAAA
ATCCAAGTACAAAGAACAGAGAAACATATACAAAGAAAGCTAACCGATGT
TCTTAAGAATTCAAAGAAGGCGAGTACAAAAACATCTGGTTTAGTGAAGG
AAGATTTACATATCGTTCAAGACCAACAGACCCTAAAAAGTACGTCACCC
ATAGAGGCGGAAAATAAACCAAAAACTGCTTCATCAGCGAAATTTGAGAA
TAAGAAGCATGCCAAAAATATTTCAAAACGGAAAACGAAGAAACTTATAT
TCATATCGTTAGGACTTTACAACGACCGTAAAGAAGTTATGAGATCTATT
CCTTCCGATTATAACATGACTGAAATGGATGGCTCTAAGTGTCCGATAAA
TGAATGCCAAATCACGTACGACCGGACACTTATCAACCAATCAGATGCTA
TTTTCTTTGATGGACGTATAATACACGAGCTTGATATCGAAATTTTGAAA
AGACTAAGATCGAAATCAGAATCTCAAATTTGGATCTGGATGATGCACGA
GAATCCAAATTTCACTTATTATAATATAACACAATATGACCAATTCTTCA
ACTGGTCAGCTACCTATAGACCTTCATCTGATATCTACATACCTTATTTT
GGAATCCAAAAACTCCCCCCTAGTCAGTACTTAAAACAGAGAGATGCACA
AACTATGGGTCACCACAGTGTGACGCCTTTTACGATTGGGCGTACATTAA
CGCCTGGGCATAAGGGCGGACAAAGAAAAACACCTTCTCTTAAGCACCGA
CAATTGCCATACTTGAAAAACTTTGCAGAAGGCAAAGACAAGAAAGTTCT
AGTAGTTATTTCACATTGTGACGAATACCGTATGCAAATGATTCGGACAT
TACGCCAATACATACCTGTCGACCTTTATGGTGGTTGCAAAGATATCATA
AATCCGGAGCTAGTGCAGTGTCACAGAGACAGTCCTGAATGTGAGGCTCT
AATGAAACGATACAAATTTTATCTGGCGATTGAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044618XLOC_044618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071878-exon-scaffold_64-1575043694:106634..108069TCONS_00071878-exon-scaffold_64-1575043694:106634..108069Clytia hemisphaericaexon
TCONS_00071878-exon-scaffold_64-1510915933:106634..108069TCONS_00071878-exon-scaffold_64-1510915933:106634..108069Clytia hemisphaericaexon
TCONS_00071878-exon-scaffold_64-1491911889:106634..108069TCONS_00071878-exon-scaffold_64-1491911889:106634..108069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:106634..108069 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0289142	0	0	0	5.43737	4.82856	4.90078	4.80281	1.58022	1.3656	1.31946	0.982309	0.12453	0.0464641	0	0	0.128613	0.147343	0.299632	0.124667	0	0.132384	0	0.0692179	0.0931317	0.156543	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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