XLOC_043532 (gene) - C. hemisphaerica

Overview
NameXLOC_043532
Unique NameXLOC_043532
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_511:343418..348551+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043532 ID=XLOC_043532|Name=XLOC_043532|organism=Clytia hemisphaerica|type=gene|length=5134bp|location=Sequence derived from alignment at scaffold_511:343418..348551+ (Clytia hemisphaerica)
CTCTCTGTAAGTTTTAATCCGCATCCCTGTTACACCCTGCCAGGAAGGTG
ACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGTG
TATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAAC
CACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAAC
CCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATAATTCTAGTT
TGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGACATTTAACC
CTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTTAATGTTAC
GCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATT
TTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAA
ATAGTgcatagatttttttttctactttttttctaGCTAAGCCACTGTCT
TGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATAT
TCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACA
TTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAA
TATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatttttcttctt
catttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTA
ATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTGCTAAGTTCT
TTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGATCCCCTCAG
GACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTATGATGTTTT
AGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAAA
GACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaaataatgtta
aaaacaaagcgataaaaaaataaaatttgatttggTCTGATTCGGAGACC
TCCGTACTTTTTCGTTTTATACTNTAAAAGACATTTAACCCTGAAGGGAG
GGAATTATTATTTTATCATACCCTGCATTTTTAATGTTACGCAGAATAAA
TAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATTTTTTCCGTAA
GAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAAATAGTgcata
gatttttttttctactttttttctaGCTAAGCCACTGTCTTGGAAAGACT
ATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATATTCTAGCTGAC
AAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACATTGACATTGA
TATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAATATTCATGGC
CACAATAATCAATTTGCCCATTagaaaaatttttcttcttcatttttcat
cttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTAATTTTTACCA
AGATTGATATGTTTACGACGGAATGCCAAGTTTTTTTGGAAGAGAGTTTA
ATTACAACAAATAGTAGGAAGATTGATCCCCTCAGGACACTTACCTCCCA
GAAAAATCGATATTTACACACCTTTATGATGTTTTAGCTATAGAGGAAGA
AGAAGGATTTCAATACAGANccttttgttatttttttcatactCTATTTT
TTGCATCTtagattttttagttttttaatttcgcctagcgaaagtattac
gatagcctttcgcggcggcggcggcggtgtaataaaaaaattagaaaacg
aaagtactcgatacggtggacNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGCAATAAAAA
TTGGAATCTCTCTGTAAGTTTTAATCCGCATCCCTGTTACACCCTGTCAG
GAAGGTGACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTA
AAAAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCA
GGCAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAG
CTCTAACCCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATAAT
TCTAGTTTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGACA
TTTAACCCTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTTA
ATGTTACGCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGG
CCTAATTTTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTTG
TAGCGAAATAGTgcatagatttttttttctactttttttctaGCTAAGCC
ACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGT
ACGATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGGA
GAATACATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTA
TAGGAAATATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatttt
tcttcttcatttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTT
AACGTTAATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTGCT
AAGTTCTTTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGATC
CCCTCAGGACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTATG
ATGTTTTAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATAT
CCGAAAAGACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaaat
aatgttaaaaacaaagcgataaaaaaataaaatttgatttggTCTGATTC
GGAGACCTCCGTACTTTTTCGTTTTATACTATTGTGGTTGAACCTGATTA
TCAATAATCCTGTTAGCAAGAATAAAAATGTTTACAAAGTCATTAGTCAT
TGAATTAGGGGAAAAGGGTACCAAAAGAACTGTAACTTAGTAATAATCTA
TTACATTTTCCAGGTGCTGAGAGTTTGGATGGTACAGAGCAGTATCATAC
TACATCTCAACCCATTACAACAGATAGTTGGAGATTAcctaaatcaaaat
caaatggaTATACCACAGATCGACCGTGGTATTGGACAACAGATCGATCC
TGGACTACTAGGCGCCCCTGGACCACTGGACGACCCTGGACTACATGGCA
CCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCATGGACCACAG
ATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGACCCTGGACT
ACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCCTG
GACCACAGATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGAC
CCTGGACTACTTGGCGCCCCTGGACCACTGGACGACCCTGGACTACTTGG
CGCCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGActcttaaaaga
aaaagaacacaTTAATAAATCATGGTAAGAAAAAGTTTCCCAGCCAAAGA
TGTATTGTGTAAGACAAGAAGCCCGtggggcgtgaaggcccagcaactTA
AAAtctcctgggtggaaaatttttgaacaggaggctaatacagcagaatt
agaaaaaaaaacaaggcgCTGTTATCGCAAAAACTTTGGCGAACCGAACC
ACTAACCACAGACACTTCTATTTGAAAAACCCTTTTCGGCCTTTTCGATA
AGCTGGGcaaattagaaaatttgaatgttttttgaTATCGTAAAGGTACG
GACATGCAAGTATATATCTccaaactttctttttgcattttaaACTAAGC
AATTTATTTATTTGCTAATGCAATAcatgatttatttttcatagGGGATG
GCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAAGTTGA
TGACACCGTTATCGTATTGTCTACagacttttgttatttttttcatactC
TATTTTTTGCATCTTAGAttttttagtttgttttgtttgttatttttttt
gttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAAACATA
TTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTGTAACT
AATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACAATCAT
CCGCCGAAATATATCAcaaattttgggtattttaacgtttttcagactTT
GAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgatttttcgatt
tgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAATCGTAC
TTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaataccaaaatca
attttttgactatggtcagagccgtTAAGTGTAAGATATTACGGTGGGGA
TTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACCGAGCC
GATTATCTATCATACCTTTGTATCACTTACTAACAATAACCTCTCCATCA
TCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00069905TCONS_00069905Clytia hemisphaericatranscript
TCONS_00069906TCONS_00069906Clytia hemisphaericatranscript
TCONS_00069907TCONS_00069907Clytia hemisphaericatranscript
TCONS_00069908TCONS_00069908Clytia hemisphaericatranscript
TCONS_00069909TCONS_00069909Clytia hemisphaericatranscript
TCONS_00069910TCONS_00069910Clytia hemisphaericatranscript
TCONS_00069911TCONS_00069911Clytia hemisphaericatranscript
TCONS_00069912TCONS_00069912Clytia hemisphaericatranscript
TCONS_00069913TCONS_00069913Clytia hemisphaericatranscript
TCONS_00069914TCONS_00069914Clytia hemisphaericatranscript
TCONS_00069915TCONS_00069915Clytia hemisphaericatranscript
TCONS_00069916TCONS_00069916Clytia hemisphaericatranscript
TCONS_00069917TCONS_00069917Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00069905-proteinTCONS_00069905-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:343418..348551 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.07	0.04	0.21	0.13	0.05	0	0.14	0.04	0.14	0.4	0.23	0.2	0.12	0.05	0.06	0.15	95.48	111.76	0.04	0.13	138.67	134.98	158.51	231.68	103.67	131.05	0.05	0.05	0.08	0