TCONS_00069916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069916
Unique NameTCONS_00069916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069916 ID=TCONS_00069916|Name=TCONS_00069916|organism=Clytia hemisphaerica|type=transcript|length=1429bp
GTTTTAATCCGCATCCCTGTTACACCCTGTCAGGAAGGTGACACAAGCCT
TGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGTGTATAAATATG
GTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAACCACAGAACGA
TGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAACCCTGAGTTAC
GCTAAGCCACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAA
ATTCGTGTACGATATTCTAGCTGACAAAAAGAAAGCTATAGAGGAAGAAG
GAGGATTTCAATACAGAAGAGAATATCCGAAAAGACGTGCTGAGAGTTTG
GATGGTACAGAGCAGTATCATACTACATCTCAACCCATTACAACAGATAG
TTGGAGATTAcctaaatcaaaatcaaatggaTATACCACAGATCGACCGT
GGTATTGGACAACAGATCGATCCTGGACTACTAGGCGCCCCTGGACCACT
GGACGACCCTGGACTACATGGCACCCCTGGACCACTGGACGACCCTGGAC
TACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACTTGGCACCCAT
GGACCACTGGACGACCCTGGACTACTTGGCGCCCCTGGACCACTGGACGA
CCCTGGACTACTTGGCGCCCATGGTGGACTACAAGTCGACCATCAGGAGG
AAGActcttaaaagaaaaagaacacaTTAATAAATCATGGGGATGGCTTG
AAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAAGTTGATGACA
CCGTTATCGTATTGTCTACagacttttgttatttttttcatactCTATTT
TTTGCATCTTAGAttttttagtttgttttgtttgttattttttttgttga
aatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAAACATATTCGT
CCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTGTAACTAATCA
GAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACAATCATCCGCC
GAAATATATCAcaaattttgggtattttaacgtttttcagactTTGAAGC
TCGGGCGAGGATTGCGATTTaagtattttatttgatttttcgatttgggg
gCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAATCGTACTTTAG
TAAAGTAACCGGAAACATAACTTTTATactcaaataccaaaatcaatttt
ttgactatggtcagagccgtTAAGTGTAAGATATTACGGTGGGGATTGTA
GTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACCGAGCCGATTA
TCTATCATACCTTTGTATCACTTACTAACAATAACCTCTCCATCATCTAG
TGAGATGTTTCCTATTTGTTCATTTTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_511:345785..348551+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069916 ID=TCONS_00069916|Name=TCONS_00069916|organism=Clytia hemisphaerica|type=transcript|length=2767bp|location=Sequence derived from alignment at scaffold_511:345785..348551+ (Clytia hemisphaerica)
GTTTTAATCCGCATCCCTGTTACACCCTGTCAGGAAGGTGACACAAGCCT
TGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGTGTATAAATATG
GTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAACCACAGAACGA
TGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAACCCTGAGTTAC
GGTAAGTAAGCATTATTTCAAATGAATGATAATTCTAGTTTGCTCTTCAA
GCTCATTTTCTCTTCAGGCATATTTAAAAGACATTTAACCCTGAAGGGAG
GGAATTATTATTTTATCATACCCTGCATTTTTAATGTTACGCAGAATAAA
TAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATTTTTTCCGTAA
GAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAAATAGTgcata
gatttttttttctactttttttctaGCTAAGCCACTGTCTTGGAAAGACT
ATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATATTCTAGCTGAC
AAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACATTGACATTGA
TATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAATATTCATGGC
CACAATAATCAATTTGCCCATTagaaaaatttttcttcttcatttttcat
cttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTAATTTTTACCA
AGATTGATGTTTCAAAATTTACGACGGACTGCTAAGTTCTTTGGAAGAGA
GTTTAATTACAACAAATAATAGGAAGATTGATCCCCTCAGGACACTTACC
TCCCAGAAAAATCGATATTTACACACCTTTATGATGTTTTAGCTATAGAG
GAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAAAGACGTAAGAA
TTTATAGCAACATGtgccaaaaattgcaaaaataatgttaaaaacaaagc
gataaaaaaataaaatttgatttggTCTGATTCGGAGACCTCCGTACTTT
TTCGTTTTATACTATTGTGGTTGAACCTGATTATCAATAATCCTGTTAGC
AAGAATAAAAATGTTTACAAAGTCATTAGTCATTGAATTAGGGGAAAAGG
GTACCAAAAGAACTGTAACTTAGTAATAATCTATTACATTTTCCAGGTGC
TGAGAGTTTGGATGGTACAGAGCAGTATCATACTACATCTCAACCCATTA
CAACAGATAGTTGGAGATTAcctaaatcaaaatcaaatggaTATACCACA
GATCGACCGTGGTATTGGACAACAGATCGATCCTGGACTACTAGGCGCCC
CTGGACCACTGGACGACCCTGGACTACATGGCACCCCTGGACCACTGGAC
GACCCTGGACTACATGGCGCCCATGGACCACAGATCATCCCTGGACTACT
TGGCACCCATGGACCACTGGACGACCCTGGACTACTTGGCACCCCTGGAC
CACTGGACGACCCTGGACTACATGGCGCCCCTGGACCACAGATCATCCCT
GGACTACTTGGCACCCATGGACCACTGGACGACCCTGGACTACTTGGCGC
CCCTGGACCACTGGACGACCCTGGACTACTTGGCGCCCATGGTGGACTAC
AAGTCGACCATCAGGAGGAAGActcttaaaagaaaaagaacacaTTAATA
AATCATGGTAAGAAAAAGTTTCCCAGCCAAAGATGTATTGTGTAAGACAA
GAAGCCCGtggggcgtgaaggcccagcaactTAAAAtctcctgggtggaa
aatttttgaacaggaggctaatacagcagaattagaaaaaaaaacaaggc
gCTGTTATCGCAAAAACTTTGGCGAACCGAACCACTAACCACAGACACTT
CTATTTGAAAAACCCTTTTCGGCCTTTTCGATAAGCTGGGcaaattagaa
aatttgaatgttttttgaTATCGTAAAGGTACGGACATGCAAGTATATAT
CTccaaactttctttttgcattttaaACTAAGCAATTTATTTATTTGCTA
ATGCAATAcatgatttatttttcatagGGGATGGCTTGAAGAGTACTTTT
ACAACAAGAAGAAGAAATAAGCAATGAAGTTGATGACACCGTTATCGTAT
TGTCTACagacttttgttatttttttcatactCTATTTTTTGCATCTTAG
AttttttagtttgttttgtttgttattttttttgttgaaatttgtaACGC
TTTTTAATTATGTTATGAACGATGTAAAACATATTCGTCCAATATGGTAC
ACCGTACTTAACCTTAATGTTGACCGTGTAACTAATCAGAAAACTATTTA
TGATATAATTTCGGCCTTGGTTGCTACAATCATCCGCCGAAATATATCAc
aaattttgggtattttaacgtttttcagactTTGAAGCTCGGGCGAGGAT
TGCGATTTaagtattttatttgatttttcgatttgggggCGGGGTTAAGA
ATTTAGAGTTAAAACTGTAACCTCCAATCGTACTTTAGTAAAGTAACCGG
AAACATAACTTTTATactcaaataccaaaatcaattttttgactatggtc
agagccgtTAAGTGTAAGATATTACGGTGGGGATTGTAGTCTTGAAACCA
TATAACTCCCCAAGAAGATATGGCAACCGAGCCGATTATCTATCATACCT
TTGTATCACTTACTAACAATAACCTCTCCATCATCTAGTGAGATGTTTCC
TATTTGTTCATTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043532XLOC_043532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069916-exon-scaffold_511-1491911889:345785..345985TCONS_00069916-exon-scaffold_511-1491911889:345785..345985Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1510915933:345785..345985TCONS_00069916-exon-scaffold_511-1510915933:345785..345985Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1575043694:345785..345985TCONS_00069916-exon-scaffold_511-1575043694:345785..345985Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1491911889:346261..346344TCONS_00069916-exon-scaffold_511-1491911889:346261..346344Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1510915933:346261..346344TCONS_00069916-exon-scaffold_511-1510915933:346261..346344Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1575043694:346261..346344TCONS_00069916-exon-scaffold_511-1575043694:346261..346344Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1491911889:346677..346727TCONS_00069916-exon-scaffold_511-1491911889:346677..346727Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1510915933:346677..346727TCONS_00069916-exon-scaffold_511-1510915933:346677..346727Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1575043694:346677..346727TCONS_00069916-exon-scaffold_511-1575043694:346677..346727Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1491911889:346981..347197TCONS_00069916-exon-scaffold_511-1491911889:346981..347197Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1510915933:346981..347197TCONS_00069916-exon-scaffold_511-1510915933:346981..347197Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1575043694:346981..347197TCONS_00069916-exon-scaffold_511-1575043694:346981..347197Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1491911889:347270..347305TCONS_00069916-exon-scaffold_511-1491911889:347270..347305Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1510915933:347270..347305TCONS_00069916-exon-scaffold_511-1510915933:347270..347305Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1575043694:347270..347305TCONS_00069916-exon-scaffold_511-1575043694:347270..347305Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1491911889:347342..347491TCONS_00069916-exon-scaffold_511-1491911889:347342..347491Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1510915933:347342..347491TCONS_00069916-exon-scaffold_511-1510915933:347342..347491Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1575043694:347342..347491TCONS_00069916-exon-scaffold_511-1575043694:347342..347491Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1491911889:347862..348551TCONS_00069916-exon-scaffold_511-1491911889:347862..348551Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1510915933:347862..348551TCONS_00069916-exon-scaffold_511-1510915933:347862..348551Clytia hemisphaericaexon
TCONS_00069916-exon-scaffold_511-1575043694:347862..348551TCONS_00069916-exon-scaffold_511-1575043694:347862..348551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:345785..348551 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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