TCONS_00069907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069907
Unique NameTCONS_00069907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069907 ID=TCONS_00069907|Name=TCONS_00069907|organism=Clytia hemisphaerica|type=transcript|length=1286bp
AGGTGACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTAAA
AAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGG
CAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCT
CTAACCCTGAGTTACGCTAAGCCACTGTCTTGGAAAGACTATGAACGCCG
AAGAGCGTACAACAAATTCGTGTACGATATTCTAGCTGACAAAAAGAAAG
CTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAAAGA
CGTGCTGAGAGTTTGGATGGTACAGAGCAGTATCATACTACATCTCAACC
CATTACAACAGATAGTTGGAGATTAcctaaatcaaaatcaaatggaTATA
CCACAGATCGACCGTGGTATTGGACAACAGATCGATCCTGGACTACTAGG
CGCCCCTGGACCACTGGACGACCCTGGACTACTTGGCGCCCCTGGACCAC
TGGACGACCCTGGACTACTTGGCGCCCATGGTGGACTACAAGTCGACCAT
CAGGAGGAAGActcttaaaagaaaaagaacacaTTAATAAATCATGGGGA
TGGCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAAGTT
GATGACACCGTTATCGTATTGTCTACagacttttgttatttttttcatac
tCTATTTTTTGCATCTTAGAttttttagtttgttttgtttgttatttttt
ttgttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAAACA
TATTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTGTAA
CTAATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACAATC
ATCCGCCGAAATATATCAcaaattttgggtattttaacgtttttcagact
TTGAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgatttttcga
tttgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAATCGT
ACTTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaataccaaaat
caattttttgactatggtcagagccgtTAAGTGTAAGATATTACGGTGGG
GATTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACCGAG
CCGATTATCTATCATACCTTTGTATCACTTACTAACAATAACCTCTCCAT
CATCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_511:343463..348551+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069907 ID=TCONS_00069907|Name=TCONS_00069907|organism=Clytia hemisphaerica|type=transcript|length=5089bp|location=Sequence derived from alignment at scaffold_511:343463..348551+ (Clytia hemisphaerica)
AGGTGACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTAAA
AAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGG
CAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCT
CTAACCCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATAATTC
TAGTTTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGACATT
TAACCCTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTTAAT
GTTACGCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCC
TAATTTTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTTGTA
GCGAAATAGTgcatagatttttttttctactttttttctaGCTAAGCCAC
TGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGTAC
GATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGGAGA
ATACATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTATA
GGAAATATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatttttc
ttcttcatttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTTAA
CGTTAATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTGCTAA
GTTCTTTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGATCCC
CTCAGGACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTATGAT
GTTTTAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCC
GAAAAGACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaaataa
tgttaaaaacaaagcgataaaaaaataaaatttgatttggTCTGATTCGG
AGACCTCCGTACTTTTTCGTTTTATACTNTAAAAGACATTTAACCCTGAA
GGGAGGGAATTATTATTTTATCATACCCTGCATTTTTAATGTTACGCAGA
ATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATTTTTTC
CGTAAGAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAAATAGT
gcatagatttttttttctactttttttctaGCTAAGCCACTGTCTTGGAA
AGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATATTCTAG
CTGACAAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACATTGAC
ATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAATATTC
ATGGCCACAATAATCAATTTGCCCATTagaaaaatttttcttcttcattt
ttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTAATTTT
TACCAAGATTGATATGTTTACGACGGAATGCCAAGTTTTTTTGGAAGAGA
GTTTAATTACAACAAATAGTAGGAAGATTGATCCCCTCAGGACACTTACC
TCCCAGAAAAATCGATATTTACACACCTTTATGATGTTTTAGCTATAGAG
GAAGAAGAAGGATTTCAATACAGANccttttgttatttttttcatactCT
ATTTTTTGCATCTtagattttttagttttttaatttcgcctagcgaaagt
attacgatagcctttcgcggcggcggcggcggtgtaataaaaaaattaga
aaacgaaagtactcgatacggtggacNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGCAAT
AAAAATTGGAATCTCTCTGTAAGTTTTAATCCGCATCCCTGTTACACCCT
GTCAGGAAGGTGACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCA
CTGTAAAAAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGT
TATCAGGCAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTT
GGCAGCTCTAACCCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATG
ATAATTCTAGTTTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAA
AGACATTTAACCCTGAAGGGAGGGAATTATTATTTTATCATACCCTGCAT
TTTTAATGTTACGCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGG
TGTGGCCTAATTTTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATA
ATTTGTAGCGAAATAGTgcatagatttttttttctactttttttctaGCT
AAGCCACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATT
CGTGTACGATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACA
ACGGAGAATACATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAA
AATTATAGGAAATATTCATGGCCACAATAATCAATTTGCCCATTagaaaa
atttttcttcttcatttttcatcttcgttatctTTCCAAGGAGGTACTCT
TTTTTAACGTTAATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGA
CTGCTAAGTTCTTTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGAT
TGATCCCCTCAGGACACTTACCTCCCAGAAAAATCGATATTTACACACCT
TTATGATGTTTTAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAG
AATATCCGAAAAGACGTAAGAATTTATAGCAACATGtgccaaaaattgca
aaaataatgttaaaaacaaagcgataaaaaaataaaatttgatttggTCT
GATTCGGAGACCTCCGTACTTTTTCGTTTTATACTATTGTGGTTGAACCT
GATTATCAATAATCCTGTTAGCAAGAATAAAAATGTTTACAAAGTCATTA
GTCATTGAATTAGGGGAAAAGGGTACCAAAAGAACTGTAACTTAGTAATA
ATCTATTACATTTTCCAGGTGCTGAGAGTTTGGATGGTACAGAGCAGTAT
CATACTACATCTCAACCCATTACAACAGATAGTTGGAGATTAcctaaatc
aaaatcaaatggaTATACCACAGATCGACCGTGGTATTGGACAACAGATC
GATCCTGGACTACTAGGCGCCCCTGGACCACTGGACGACCCTGGACTACA
TGGCACCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCATGGAC
CACAGATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGACCCT
GGACTACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACATGGCGC
CCCTGGACCACAGATCATCCCTGGACTACTTGGCACCCATGGACCACTGG
ACGACCCTGGACTACTTGGCGCCCCTGGACCACTGGACGACCCTGGACTA
CTTGGCGCCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGActctta
aaagaaaaagaacacaTTAATAAATCATGGTAAGAAAAAGTTTCCCAGCC
AAAGATGTATTGTGTAAGACAAGAAGCCCGtggggcgtgaaggcccagca
actTAAAAtctcctgggtggaaaatttttgaacaggaggctaatacagca
gaattagaaaaaaaaacaaggcgCTGTTATCGCAAAAACTTTGGCGAACC
GAACCACTAACCACAGACACTTCTATTTGAAAAACCCTTTTCGGCCTTTT
CGATAAGCTGGGcaaattagaaaatttgaatgttttttgaTATCGTAAAG
GTACGGACATGCAAGTATATATCTccaaactttctttttgcattttaaAC
TAAGCAATTTATTTATTTGCTAATGCAATAcatgatttatttttcatagG
GGATGGCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAA
GTTGATGACACCGTTATCGTATTGTCTACagacttttgttatttttttca
tactCTATTTTTTGCATCTTAGAttttttagtttgttttgtttgttattt
tttttgttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAA
ACATATTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTG
TAACTAATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACA
ATCATCCGCCGAAATATATCAcaaattttgggtattttaacgtttttcag
actTTGAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgattttt
cgatttgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAAT
CGTACTTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaataccaa
aatcaattttttgactatggtcagagccgtTAAGTGTAAGATATTACGGT
GGGGATTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACC
GAGCCGATTATCTATCATACCTTTGTATCACTTACTAACAATAACCTCTC
CATCATCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043532XLOC_043532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069907-exon-scaffold_511-1491911889:343463..343628TCONS_00069907-exon-scaffold_511-1491911889:343463..343628Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1510915933:343463..343628TCONS_00069907-exon-scaffold_511-1510915933:343463..343628Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1575043694:343463..343628TCONS_00069907-exon-scaffold_511-1575043694:343463..343628Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1491911889:343904..343987TCONS_00069907-exon-scaffold_511-1491911889:343904..343987Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1510915933:343904..343987TCONS_00069907-exon-scaffold_511-1510915933:343904..343987Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1575043694:343904..343987TCONS_00069907-exon-scaffold_511-1575043694:343904..343987Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1491911889:344320..344370TCONS_00069907-exon-scaffold_511-1491911889:344320..344370Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1510915933:344320..344370TCONS_00069907-exon-scaffold_511-1510915933:344320..344370Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1575043694:344320..344370TCONS_00069907-exon-scaffold_511-1575043694:344320..344370Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1491911889:346981..347161TCONS_00069907-exon-scaffold_511-1491911889:346981..347161Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1510915933:346981..347161TCONS_00069907-exon-scaffold_511-1510915933:346981..347161Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1575043694:346981..347161TCONS_00069907-exon-scaffold_511-1575043694:346981..347161Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1491911889:347378..347491TCONS_00069907-exon-scaffold_511-1491911889:347378..347491Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1510915933:347378..347491TCONS_00069907-exon-scaffold_511-1510915933:347378..347491Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1575043694:347378..347491TCONS_00069907-exon-scaffold_511-1575043694:347378..347491Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1491911889:347862..348551TCONS_00069907-exon-scaffold_511-1491911889:347862..348551Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1510915933:347862..348551TCONS_00069907-exon-scaffold_511-1510915933:347862..348551Clytia hemisphaericaexon
TCONS_00069907-exon-scaffold_511-1575043694:347862..348551TCONS_00069907-exon-scaffold_511-1575043694:347862..348551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:343463..348551 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0658825	0	0	0	0	0	0	0	0.138795	0	0.233617	0.028857	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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