TCONS_00069906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069906
Unique NameTCONS_00069906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069906 ID=TCONS_00069906|Name=TCONS_00069906|organism=Clytia hemisphaerica|type=transcript|length=1439bp
CTCTCTGTAAGTTTTAATCCGCATCCCTGTTACACCCTGCCAGGAAGGTG
ACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGTG
TATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAAC
CACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAAC
CCTGAGTTACGCTAAGCCACTGTCTTGGAAAGACTATGAACGCCGAAGAG
CGTACAACAAATTCGTGTACGATATTCTAGCTGACAAAAAGAAAGCTATA
GAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAAAGACGTGC
TGAGAGTTTGGATGGTACAGAGCAGTATCATACTACATCTCAACCCATTA
CAACAGATAGTTGGAGATTAcctaaatcaaaatcaaatggaTATACCACA
GATCGACCGTGGTATTGGACAACAGATCGATCCTGGACTACTAGGCGCCC
CTGGACCACTGGACGACCCTGGACTACATGGCACCCCTGGACCACTGGAC
GACCCTGGACTACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACT
TGGCACCCATGGACCACTGGACGACCCTGGACTACTTGGCGCCCCTGGAC
CACTGGACGACCCTGGACTACTTGGCGCCCATGGTGGACTACAAGTCGAC
CATCAGGAGGAAGActcttaaaagaaaaagaacacaTTAATAAATCATGG
GGATGGCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAA
GTTGATGACACCGTTATCGTATTGTCTACagacttttgttatttttttca
tactCTATTTTTTGCATCTTAGAttttttagtttgttttgtttgttattt
tttttgttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAA
ACATATTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTG
TAACTAATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACA
ATCATCCGCCGAAATATATCAcaaattttgggtattttaacgtttttcag
actTTGAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgattttt
cgatttgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAAT
CGTACTTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaataccaa
aatcaattttttgactatggtcagagccgtTAAGTGTAAGATATTACGGT
GGGGATTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACC
GAGCCGATTATCTATCATACCTTTGTATCACTTACTAACAATAACCTCTC
CATCATCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_511:343418..348551+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069906 ID=TCONS_00069906|Name=TCONS_00069906|organism=Clytia hemisphaerica|type=transcript|length=5134bp|location=Sequence derived from alignment at scaffold_511:343418..348551+ (Clytia hemisphaerica)
CTCTCTGTAAGTTTTAATCCGCATCCCTGTTACACCCTGCCAGGAAGGTG
ACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGTG
TATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAAC
CACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAAC
CCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATAATTCTAGTT
TGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGACATTTAACC
CTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTTAATGTTAC
GCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATT
TTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAA
ATAGTgcatagatttttttttctactttttttctaGCTAAGCCACTGTCT
TGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATAT
TCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACA
TTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAA
TATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatttttcttctt
catttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTA
ATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTGCTAAGTTCT
TTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGATCCCCTCAG
GACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTATGATGTTTT
AGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAAA
GACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaaataatgtta
aaaacaaagcgataaaaaaataaaatttgatttggTCTGATTCGGAGACC
TCCGTACTTTTTCGTTTTATACTNTAAAAGACATTTAACCCTGAAGGGAG
GGAATTATTATTTTATCATACCCTGCATTTTTAATGTTACGCAGAATAAA
TAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATTTTTTCCGTAA
GAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAAATAGTgcata
gatttttttttctactttttttctaGCTAAGCCACTGTCTTGGAAAGACT
ATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATATTCTAGCTGAC
AAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACATTGACATTGA
TATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAATATTCATGGC
CACAATAATCAATTTGCCCATTagaaaaatttttcttcttcatttttcat
cttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTAATTTTTACCA
AGATTGATATGTTTACGACGGAATGCCAAGTTTTTTTGGAAGAGAGTTTA
ATTACAACAAATAGTAGGAAGATTGATCCCCTCAGGACACTTACCTCCCA
GAAAAATCGATATTTACACACCTTTATGATGTTTTAGCTATAGAGGAAGA
AGAAGGATTTCAATACAGANccttttgttatttttttcatactCTATTTT
TTGCATCTtagattttttagttttttaatttcgcctagcgaaagtattac
gatagcctttcgcggcggcggcggcggtgtaataaaaaaattagaaaacg
aaagtactcgatacggtggacNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGCAATAAAAA
TTGGAATCTCTCTGTAAGTTTTAATCCGCATCCCTGTTACACCCTGTCAG
GAAGGTGACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTA
AAAAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCA
GGCAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAG
CTCTAACCCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATAAT
TCTAGTTTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGACA
TTTAACCCTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTTA
ATGTTACGCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGG
CCTAATTTTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTTG
TAGCGAAATAGTgcatagatttttttttctactttttttctaGCTAAGCC
ACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGT
ACGATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGGA
GAATACATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTA
TAGGAAATATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatttt
tcttcttcatttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTT
AACGTTAATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTGCT
AAGTTCTTTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGATC
CCCTCAGGACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTATG
ATGTTTTAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATAT
CCGAAAAGACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaaat
aatgttaaaaacaaagcgataaaaaaataaaatttgatttggTCTGATTC
GGAGACCTCCGTACTTTTTCGTTTTATACTATTGTGGTTGAACCTGATTA
TCAATAATCCTGTTAGCAAGAATAAAAATGTTTACAAAGTCATTAGTCAT
TGAATTAGGGGAAAAGGGTACCAAAAGAACTGTAACTTAGTAATAATCTA
TTACATTTTCCAGGTGCTGAGAGTTTGGATGGTACAGAGCAGTATCATAC
TACATCTCAACCCATTACAACAGATAGTTGGAGATTAcctaaatcaaaat
caaatggaTATACCACAGATCGACCGTGGTATTGGACAACAGATCGATCC
TGGACTACTAGGCGCCCCTGGACCACTGGACGACCCTGGACTACATGGCA
CCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCATGGACCACAG
ATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGACCCTGGACT
ACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCCTG
GACCACAGATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGAC
CCTGGACTACTTGGCGCCCCTGGACCACTGGACGACCCTGGACTACTTGG
CGCCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGActcttaaaaga
aaaagaacacaTTAATAAATCATGGTAAGAAAAAGTTTCCCAGCCAAAGA
TGTATTGTGTAAGACAAGAAGCCCGtggggcgtgaaggcccagcaactTA
AAAtctcctgggtggaaaatttttgaacaggaggctaatacagcagaatt
agaaaaaaaaacaaggcgCTGTTATCGCAAAAACTTTGGCGAACCGAACC
ACTAACCACAGACACTTCTATTTGAAAAACCCTTTTCGGCCTTTTCGATA
AGCTGGGcaaattagaaaatttgaatgttttttgaTATCGTAAAGGTACG
GACATGCAAGTATATATCTccaaactttctttttgcattttaaACTAAGC
AATTTATTTATTTGCTAATGCAATAcatgatttatttttcatagGGGATG
GCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAAGTTGA
TGACACCGTTATCGTATTGTCTACagacttttgttatttttttcatactC
TATTTTTTGCATCTTAGAttttttagtttgttttgtttgttatttttttt
gttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAAACATA
TTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTGTAACT
AATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACAATCAT
CCGCCGAAATATATCAcaaattttgggtattttaacgtttttcagactTT
GAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgatttttcgatt
tgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAATCGTAC
TTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaataccaaaatca
attttttgactatggtcagagccgtTAAGTGTAAGATATTACGGTGGGGA
TTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACCGAGCC
GATTATCTATCATACCTTTGTATCACTTACTAACAATAACCTCTCCATCA
TCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043532XLOC_043532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069906-exon-scaffold_511-1491911889:343418..343628TCONS_00069906-exon-scaffold_511-1491911889:343418..343628Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1510915933:343418..343628TCONS_00069906-exon-scaffold_511-1510915933:343418..343628Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1575043694:343418..343628TCONS_00069906-exon-scaffold_511-1575043694:343418..343628Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1491911889:344694..344777TCONS_00069906-exon-scaffold_511-1491911889:344694..344777Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1510915933:344694..344777TCONS_00069906-exon-scaffold_511-1510915933:344694..344777Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1575043694:344694..344777TCONS_00069906-exon-scaffold_511-1575043694:344694..344777Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1491911889:346677..346727TCONS_00069906-exon-scaffold_511-1491911889:346677..346727Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1510915933:346677..346727TCONS_00069906-exon-scaffold_511-1510915933:346677..346727Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1575043694:346677..346727TCONS_00069906-exon-scaffold_511-1575043694:346677..346727Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1491911889:346981..347197TCONS_00069906-exon-scaffold_511-1491911889:346981..347197Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1510915933:346981..347197TCONS_00069906-exon-scaffold_511-1510915933:346981..347197Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1575043694:346981..347197TCONS_00069906-exon-scaffold_511-1575043694:346981..347197Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1491911889:347270..347305TCONS_00069906-exon-scaffold_511-1491911889:347270..347305Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1510915933:347270..347305TCONS_00069906-exon-scaffold_511-1510915933:347270..347305Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1575043694:347270..347305TCONS_00069906-exon-scaffold_511-1575043694:347270..347305Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1491911889:347342..347491TCONS_00069906-exon-scaffold_511-1491911889:347342..347491Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1510915933:347342..347491TCONS_00069906-exon-scaffold_511-1510915933:347342..347491Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1575043694:347342..347491TCONS_00069906-exon-scaffold_511-1575043694:347342..347491Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1491911889:347862..348551TCONS_00069906-exon-scaffold_511-1491911889:347862..348551Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1510915933:347862..348551TCONS_00069906-exon-scaffold_511-1510915933:347862..348551Clytia hemisphaericaexon
TCONS_00069906-exon-scaffold_511-1575043694:347862..348551TCONS_00069906-exon-scaffold_511-1575043694:347862..348551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:343418..348551 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.654244	0	0	1.24376	1.73711	0.354088	0.329635	0	1.11718	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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