TCONS_00069917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069917
Unique NameTCONS_00069917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069917 ID=TCONS_00069917|Name=TCONS_00069917|organism=Clytia hemisphaerica|type=transcript|length=1429bp
GTTTTAATCCGCATCCCTGTTACACCCTGTCAGGAAGGTGACACAAGCCT
TGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGTGTATAAATATG
GTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAACCACAGAACGA
TGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAACCCTGAGTTAC
GCTAAGCCACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAA
ATTCGTGTACGATATTCTAGCTGACAAAAAGAAAGCTATAGAGGAAGAAG
GAGGATTTCAATACAGAAGAGAATATCCGAAAAGACGTGCTGAGAGTTTG
GATGGTACAGAGCAGTATCATACTACATCTCAACCCATTACAACAGATAG
TTGGAGATTAcctaaatcaaaatcaaatggaTATACCACAGATCGACCGT
GGTATTGGACAACAGATCGATCCTGGACTACTAGGCGCCCCTGGACCACT
GGACGACCCTGGACTACTTGGCACCCCTGGACCACTGGACGACCCTGGAC
TACATGGCGCCCCTGGACCACAGATCATCCCTGGACTACTTGGCACCCAT
GGACCACTGGACGACCCTGGACTACTTGGCGCCCCTGGACCACTGGACGA
CCCTGGACTACTTGGCGCCCATGGTGGACTACAAGTCGACCATCAGGAGG
AAGActcttaaaagaaaaagaacacaTTAATAAATCATGGGGATGGCTTG
AAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAAGTTGATGACA
CCGTTATCGTATTGTCTACagacttttgttatttttttcatactCTATTT
TTTGCATCTTAGAttttttagtttgttttgtttgttattttttttgttga
aatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAAACATATTCGT
CCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTGTAACTAATCA
GAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACAATCATCCGCC
GAAATATATCAcaaattttgggtattttaacgtttttcagactTTGAAGC
TCGGGCGAGGATTGCGATTTaagtattttatttgatttttcgatttgggg
gCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAATCGTACTTTAG
TAAAGTAACCGGAAACATAACTTTTATactcaaataccaaaatcaatttt
ttgactatggtcagagccgtTAAGTGTAAGATATTACGGTGGGGATTGTA
GTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACCGAGCCGATTA
TCTATCATACCTTTGTATCACTTACTAACAATAACCTCTCCATCATCTAG
TGAGATGTTTCCTATTTGTTCATTTTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_511:345785..348551+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069917 ID=TCONS_00069917|Name=TCONS_00069917|organism=Clytia hemisphaerica|type=transcript|length=2767bp|location=Sequence derived from alignment at scaffold_511:345785..348551+ (Clytia hemisphaerica)
GTTTTAATCCGCATCCCTGTTACACCCTGTCAGGAAGGTGACACAAGCCT
TGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGTGTATAAATATG
GTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAACCACAGAACGA
TGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAACCCTGAGTTAC
GGTAAGTAAGCATTATTTCAAATGAATGATAATTCTAGTTTGCTCTTCAA
GCTCATTTTCTCTTCAGGCATATTTAAAAGACATTTAACCCTGAAGGGAG
GGAATTATTATTTTATCATACCCTGCATTTTTAATGTTACGCAGAATAAA
TAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATTTTTTCCGTAA
GAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAAATAGTgcata
gatttttttttctactttttttctaGCTAAGCCACTGTCTTGGAAAGACT
ATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATATTCTAGCTGAC
AAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACATTGACATTGA
TATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAATATTCATGGC
CACAATAATCAATTTGCCCATTagaaaaatttttcttcttcatttttcat
cttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTAATTTTTACCA
AGATTGATGTTTCAAAATTTACGACGGACTGCTAAGTTCTTTGGAAGAGA
GTTTAATTACAACAAATAATAGGAAGATTGATCCCCTCAGGACACTTACC
TCCCAGAAAAATCGATATTTACACACCTTTATGATGTTTTAGCTATAGAG
GAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAAAGACGTAAGAA
TTTATAGCAACATGtgccaaaaattgcaaaaataatgttaaaaacaaagc
gataaaaaaataaaatttgatttggTCTGATTCGGAGACCTCCGTACTTT
TTCGTTTTATACTATTGTGGTTGAACCTGATTATCAATAATCCTGTTAGC
AAGAATAAAAATGTTTACAAAGTCATTAGTCATTGAATTAGGGGAAAAGG
GTACCAAAAGAACTGTAACTTAGTAATAATCTATTACATTTTCCAGGTGC
TGAGAGTTTGGATGGTACAGAGCAGTATCATACTACATCTCAACCCATTA
CAACAGATAGTTGGAGATTAcctaaatcaaaatcaaatggaTATACCACA
GATCGACCGTGGTATTGGACAACAGATCGATCCTGGACTACTAGGCGCCC
CTGGACCACTGGACGACCCTGGACTACATGGCACCCCTGGACCACTGGAC
GACCCTGGACTACATGGCGCCCATGGACCACAGATCATCCCTGGACTACT
TGGCACCCATGGACCACTGGACGACCCTGGACTACTTGGCACCCCTGGAC
CACTGGACGACCCTGGACTACATGGCGCCCCTGGACCACAGATCATCCCT
GGACTACTTGGCACCCATGGACCACTGGACGACCCTGGACTACTTGGCGC
CCCTGGACCACTGGACGACCCTGGACTACTTGGCGCCCATGGTGGACTAC
AAGTCGACCATCAGGAGGAAGActcttaaaagaaaaagaacacaTTAATA
AATCATGGTAAGAAAAAGTTTCCCAGCCAAAGATGTATTGTGTAAGACAA
GAAGCCCGtggggcgtgaaggcccagcaactTAAAAtctcctgggtggaa
aatttttgaacaggaggctaatacagcagaattagaaaaaaaaacaaggc
gCTGTTATCGCAAAAACTTTGGCGAACCGAACCACTAACCACAGACACTT
CTATTTGAAAAACCCTTTTCGGCCTTTTCGATAAGCTGGGcaaattagaa
aatttgaatgttttttgaTATCGTAAAGGTACGGACATGCAAGTATATAT
CTccaaactttctttttgcattttaaACTAAGCAATTTATTTATTTGCTA
ATGCAATAcatgatttatttttcatagGGGATGGCTTGAAGAGTACTTTT
ACAACAAGAAGAAGAAATAAGCAATGAAGTTGATGACACCGTTATCGTAT
TGTCTACagacttttgttatttttttcatactCTATTTTTTGCATCTTAG
AttttttagtttgttttgtttgttattttttttgttgaaatttgtaACGC
TTTTTAATTATGTTATGAACGATGTAAAACATATTCGTCCAATATGGTAC
ACCGTACTTAACCTTAATGTTGACCGTGTAACTAATCAGAAAACTATTTA
TGATATAATTTCGGCCTTGGTTGCTACAATCATCCGCCGAAATATATCAc
aaattttgggtattttaacgtttttcagactTTGAAGCTCGGGCGAGGAT
TGCGATTTaagtattttatttgatttttcgatttgggggCGGGGTTAAGA
ATTTAGAGTTAAAACTGTAACCTCCAATCGTACTTTAGTAAAGTAACCGG
AAACATAACTTTTATactcaaataccaaaatcaattttttgactatggtc
agagccgtTAAGTGTAAGATATTACGGTGGGGATTGTAGTCTTGAAACCA
TATAACTCCCCAAGAAGATATGGCAACCGAGCCGATTATCTATCATACCT
TTGTATCACTTACTAACAATAACCTCTCCATCATCTAGTGAGATGTTTCC
TATTTGTTCATTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043532XLOC_043532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069917-exon-scaffold_511-1491911889:345785..345985TCONS_00069917-exon-scaffold_511-1491911889:345785..345985Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1510915933:345785..345985TCONS_00069917-exon-scaffold_511-1510915933:345785..345985Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1575043694:345785..345985TCONS_00069917-exon-scaffold_511-1575043694:345785..345985Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1491911889:346261..346344TCONS_00069917-exon-scaffold_511-1491911889:346261..346344Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1510915933:346261..346344TCONS_00069917-exon-scaffold_511-1510915933:346261..346344Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1575043694:346261..346344TCONS_00069917-exon-scaffold_511-1575043694:346261..346344Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1491911889:346677..346727TCONS_00069917-exon-scaffold_511-1491911889:346677..346727Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1510915933:346677..346727TCONS_00069917-exon-scaffold_511-1510915933:346677..346727Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1575043694:346677..346727TCONS_00069917-exon-scaffold_511-1575043694:346677..346727Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1491911889:346981..347161TCONS_00069917-exon-scaffold_511-1491911889:346981..347161Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1510915933:346981..347161TCONS_00069917-exon-scaffold_511-1510915933:346981..347161Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1575043694:346981..347161TCONS_00069917-exon-scaffold_511-1575043694:346981..347161Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1491911889:347270..347491TCONS_00069917-exon-scaffold_511-1491911889:347270..347491Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1510915933:347270..347491TCONS_00069917-exon-scaffold_511-1510915933:347270..347491Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1575043694:347270..347491TCONS_00069917-exon-scaffold_511-1575043694:347270..347491Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1491911889:347862..348551TCONS_00069917-exon-scaffold_511-1491911889:347862..348551Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1510915933:347862..348551TCONS_00069917-exon-scaffold_511-1510915933:347862..348551Clytia hemisphaericaexon
TCONS_00069917-exon-scaffold_511-1575043694:347862..348551TCONS_00069917-exon-scaffold_511-1575043694:347862..348551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:345785..348551 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.00575565	0	0	0	0	0	0	0	0.00723544	0	0	0	0	0.946977	0.810057	0	0.00460645	0.448768	1.38388e-08	0.476098	3.22998	3.7555	7.49332	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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