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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069912 ID=TCONS_00069912|Name=TCONS_00069912|organism=Clytia hemisphaerica|type=transcript|length=1318bp
GACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGT
GTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAA
CCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAA
CCCTGAGTTACGCTAAGCCACTGTCTTGGAAAGACTATGAACGCCGAAGA
GCGTACAACAAATTCGTGTACGATATTCTAGCTGACAAAAAGAAAGCTAT
AGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAAAGACGTG
CTGAGAGTTTGGATGGTACAGAGCAGTATCATACTACATCTCAACCCATT
ACAACAGATAGTTGGAGATTAcctaaatcaaaatcaaatggaTATACCAC
AGATCGACCGTGGTATTGGACAACAGATCGATCCTGGACTACTAGGCGCC
CCTGGACCACTGGACGACCCTGGACTACTTGGCACCCATGGACCACTGGA
CGACCCTGGACTACTTGGCGCCCCTGGACCACTGGACGACCCTGGACTAC
TTGGCGCCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGActcttaa
aagaaaaagaacacaTTAATAAATCATGGGGATGGCTTGAAGAGTACTTT
TACAACAAGAAGAAGAAATAAGCAATGAAGTTGATGACACCGTTATCGTA
TTGTCTACagacttttgttatttttttcatactCTATTTTTTGCATCTTA
GAttttttagtttgttttgtttgttattttttttgttgaaatttgtaACG
CTTTTTAATTATGTTATGAACGATGTAAAACATATTCGTCCAATATGGTA
CACCGTACTTAACCTTAATGTTGACCGTGTAACTAATCAGAAAACTATTT
ATGATATAATTTCGGCCTTGGTTGCTACAATCATCCGCCGAAATATATCA
caaattttgggtattttaacgtttttcagactTTGAAGCTCGGGCGAGGA
TTGCGATTTaagtattttatttgatttttcgatttgggggCGGGGTTAAG
AATTTAGAGTTAAAACTGTAACCTCCAATCGTACTTTAGTAAAGTAACCG
GAAACATAACTTTTATactcaaataccaaaatcaattttttgactatggt
cagagccgtTAAGTGTAAGATATTACGGTGGGGATTGTAGTCTTGAAACC
ATATAACTCCCCAAGAAGATATGGCAACCGAGCCGATTATCTATCATACC
TTTGTATCACTTACTAACAATAACCTCTCCATCATCTAGTGAGATGTTTC
CTATTTGTTCATTTTTCG Run BLAST on NCBI transcript from alignment at scaffold_511:343467..348551+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069912 ID=TCONS_00069912|Name=TCONS_00069912|organism=Clytia hemisphaerica|type=transcript|length=5085bp|location=Sequence derived from alignment at scaffold_511:343467..348551+ (Clytia hemisphaerica)
GACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGT
GTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAA
CCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAA
CCCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATAATTCTAGT
TTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGACATTTAAC
CCTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTTAATGTTA
CGCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAAT
TTTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGA
AATAGTgcatagatttttttttctactttttttctaGCTAAGCCACTGTC
TTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATA
TTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGGAGAATAC
ATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAA
ATATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatttttcttct
tcatttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTT
AATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTGCTAAGTTC
TTTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGATCCCCTCA
GGACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTATGATGTTT
TAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAA
AGACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaaataatgtt
aaaaacaaagcgataaaaaaataaaatttgatttggTCTGATTCGGAGAC
CTCCGTACTTTTTCGTTTTATACTNTAAAAGACATTTAACCCTGAAGGGA
GGGAATTATTATTTTATCATACCCTGCATTTTTAATGTTACGCAGAATAA
ATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATTTTTTCCGTA
AGAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAAATAGTgcat
agatttttttttctactttttttctaGCTAAGCCACTGTCTTGGAAAGAC
TATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATATTCTAGCTGA
CAAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACATTGACATTG
ATATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAATATTCATGG
CCACAATAATCAATTTGCCCATTagaaaaatttttcttcttcatttttca
tcttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTAATTTTTACC
AAGATTGATATGTTTACGACGGAATGCCAAGTTTTTTTGGAAGAGAGTTT
AATTACAACAAATAGTAGGAAGATTGATCCCCTCAGGACACTTACCTCCC
AGAAAAATCGATATTTACACACCTTTATGATGTTTTAGCTATAGAGGAAG
AAGAAGGATTTCAATACAGANccttttgttatttttttcatactCTATTT
TTTGCATCTtagattttttagttttttaatttcgcctagcgaaagtatta
cgatagcctttcgcggcggcggcggcggtgtaataaaaaaattagaaaac
gaaagtactcgatacggtggacNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGCAATAAAA
ATTGGAATCTCTCTGTAAGTTTTAATCCGCATCCCTGTTACACCCTGTCA
GGAAGGTGACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGT
AAAAAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATC
AGGCAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCA
GCTCTAACCCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATAA
TTCTAGTTTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGAC
ATTTAACCCTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTT
AATGTTACGCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTG
GCCTAATTTTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTT
GTAGCGAAATAGTgcatagatttttttttctactttttttctaGCTAAGC
CACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTG
TACGATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGG
AGAATACATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATT
ATAGGAAATATTCATGGCCACAATAATCAATTTGCCCATTagaaaaattt
ttcttcttcatttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTT
TAACGTTAATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTGC
TAAGTTCTTTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGAT
CCCCTCAGGACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTAT
GATGTTTTAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATA
TCCGAAAAGACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaaa
taatgttaaaaacaaagcgataaaaaaataaaatttgatttggTCTGATT
CGGAGACCTCCGTACTTTTTCGTTTTATACTATTGTGGTTGAACCTGATT
ATCAATAATCCTGTTAGCAAGAATAAAAATGTTTACAAAGTCATTAGTCA
TTGAATTAGGGGAAAAGGGTACCAAAAGAACTGTAACTTAGTAATAATCT
ATTACATTTTCCAGGTGCTGAGAGTTTGGATGGTACAGAGCAGTATCATA
CTACATCTCAACCCATTACAACAGATAGTTGGAGATTAcctaaatcaaaa
tcaaatggaTATACCACAGATCGACCGTGGTATTGGACAACAGATCGATC
CTGGACTACTAGGCGCCCCTGGACCACTGGACGACCCTGGACTACATGGC
ACCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCATGGACCACA
GATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGACCCTGGAC
TACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCCT
GGACCACAGATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGA
CCCTGGACTACTTGGCGCCCCTGGACCACTGGACGACCCTGGACTACTTG
GCGCCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGActcttaaaag
aaaaagaacacaTTAATAAATCATGGTAAGAAAAAGTTTCCCAGCCAAAG
ATGTATTGTGTAAGACAAGAAGCCCGtggggcgtgaaggcccagcaactT
AAAAtctcctgggtggaaaatttttgaacaggaggctaatacagcagaat
tagaaaaaaaaacaaggcgCTGTTATCGCAAAAACTTTGGCGAACCGAAC
CACTAACCACAGACACTTCTATTTGAAAAACCCTTTTCGGCCTTTTCGAT
AAGCTGGGcaaattagaaaatttgaatgttttttgaTATCGTAAAGGTAC
GGACATGCAAGTATATATCTccaaactttctttttgcattttaaACTAAG
CAATTTATTTATTTGCTAATGCAATAcatgatttatttttcatagGGGAT
GGCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAAGTTG
ATGACACCGTTATCGTATTGTCTACagacttttgttatttttttcatact
CTATTTTTTGCATCTTAGAttttttagtttgttttgtttgttattttttt
tgttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAAACAT
ATTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTGTAAC
TAATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACAATCA
TCCGCCGAAATATATCAcaaattttgggtattttaacgtttttcagactT
TGAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgatttttcgat
ttgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAATCGTA
CTTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaataccaaaatc
aattttttgactatggtcagagccgtTAAGTGTAAGATATTACGGTGGGG
ATTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACCGAGC
CGATTATCTATCATACCTTTGTATCACTTACTAACAATAACCTCTCCATC
ATCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069912-exon-scaffold_511-1491911889:343467..343628 | TCONS_00069912-exon-scaffold_511-1491911889:343467..343628 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1510915933:343467..343628 | TCONS_00069912-exon-scaffold_511-1510915933:343467..343628 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1575043694:343467..343628 | TCONS_00069912-exon-scaffold_511-1575043694:343467..343628 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1491911889:346261..346344 | TCONS_00069912-exon-scaffold_511-1491911889:346261..346344 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1510915933:346261..346344 | TCONS_00069912-exon-scaffold_511-1510915933:346261..346344 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1575043694:346261..346344 | TCONS_00069912-exon-scaffold_511-1575043694:346261..346344 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1491911889:346677..346727 | TCONS_00069912-exon-scaffold_511-1491911889:346677..346727 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1510915933:346677..346727 | TCONS_00069912-exon-scaffold_511-1510915933:346677..346727 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1575043694:346677..346727 | TCONS_00069912-exon-scaffold_511-1575043694:346677..346727 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1491911889:346981..347161 | TCONS_00069912-exon-scaffold_511-1491911889:346981..347161 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1510915933:346981..347161 | TCONS_00069912-exon-scaffold_511-1510915933:346981..347161 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1575043694:346981..347161 | TCONS_00069912-exon-scaffold_511-1575043694:346981..347161 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1491911889:347342..347491 | TCONS_00069912-exon-scaffold_511-1491911889:347342..347491 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1510915933:347342..347491 | TCONS_00069912-exon-scaffold_511-1510915933:347342..347491 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1575043694:347342..347491 | TCONS_00069912-exon-scaffold_511-1575043694:347342..347491 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1491911889:347862..348551 | TCONS_00069912-exon-scaffold_511-1491911889:347862..348551 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1510915933:347862..348551 | TCONS_00069912-exon-scaffold_511-1510915933:347862..348551 | Clytia hemisphaerica | exon |
| TCONS_00069912-exon-scaffold_511-1575043694:347862..348551 | TCONS_00069912-exon-scaffold_511-1575043694:347862..348551 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:343467..348551 + |
Blast
The following BLAST results are available for this feature:
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