XLOC_041859 (gene) - C. hemisphaerica

Overview
NameXLOC_041859
Unique NameXLOC_041859
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_462:878768..887369-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041859 ID=XLOC_041859|Name=XLOC_041859|organism=Clytia hemisphaerica|type=gene|length=8602bp|location=Sequence derived from alignment at scaffold_462:878768..887369- (Clytia hemisphaerica)
AGTGGATGATTATTGGATCTCGTGTTTGTGTCCATGTTGTACACTCGCCC
AAGGAATGAGGGTAAGAATATATTATAAGCCTCGTGAAATACACACATAA
CAATATTTTCTCATTAAGACGTCTGCGTTCATCCATCAGACGGCACACCA
CCCCAACGCGGAACATGTCCTATATCGTCAAAGAAAATATCGAATCACTG
TCAAAACTGCTTATCTTGAATAAAAAAACATCCAGATAGATGGCAATTTG
AAATCTATATCTAAGGATGGGTTCTTACACGTTTCTTATGTATGTTAAAA
TTCCATTTTATTTTATGCTAAAATCTAAACATTTAACTTGACTATCTCTA
CTTAGGAAAATAATCATTTCAAAAAGTTTGGATGTTTTTCTCTGGACGAT
AGAAGCAAAAATAAAATAAAGTAAAGAAATATGGAACCATCAGAATATCC
CTTTAAGGATAAAAATTGGAGTAGGGTTTAGTGTTTAGTGATAAACTTTT
CTTTTCTTTTTATTTTTATTTTCACAGGAAATCAAAGCGCACAGTGAAGC
ACCGAACCAGCAATTCATGGCAAGAGAATAATAAACCTTATCCATCTGGT
AAAAGTATGAGGTGGTTGTGGCAGGACTGTCAACCTGGATCAAGCCGAAT
ACTGAGTAATCATTCGTCAAATTTGAATGCATTTAGATGATCTGAAAACA
TGTAGCTTCATTTCTTGATTTGCTAAAGTATGCTACTGGATTTGTAGGAA
TTATCATCCTGGCATCAGGCATCAGACAATACAAATAAAAGCAACAGACA
GCGAAAATAAAGAAAGCCTTTAAACTTATTAGCTTGGGTTTAAAAGATGA
TAGTTTCTTTTTCAATGGAAAGAACAAGCTGGCGTGTAAAACAAAACCTT
GAATTTGATTGGATTTAATTGGGAATGAAATATATGCCACGGAAAAGGAG
ATTTGATTTGAGTACATAACTCTAATTCTACCTGTAAACGTTTTTTATAA
GAGCCATATATTCTTAACTTTTTGAGTTTTAAGCAGTTAGTCACACTAGG
AAATCTAGCTTTCAGAAAAAACAACATCAGTCATCTACAGGATGTATTTG
CACAACAAGGATGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTTTGAAAATGTAAATTT
CATTAAAAAGCGCCGGGTTATTTTTTCATGAATCCCTTTAGAAGTTTTGC
GGCGCATTTTTTTGCTTGAGAGTCAAGAAAACGATAAAGCGCTTTCGCAG
CATTAATCTTTGATACACATTTTGGCGGGACGCTAGTGTGACTAACTGTT
AAGTCTAATCTTCTTGACTTGTTCATATTTTCACCATTTTTTGAGTATTT
TTCCCCGTTTTTCNTTAAGTCTAATCTTCTTGACTTGCTCATATTTTCAC
CATTTTTTGAGTATTTTTCCCCGTTTTTCTAAGAAATCGGGTGTTTTAGA
GCCCACAAAGCCTCAAACTGTTCTTAACTTGTTCTTAACAATTTCTTTTC
CATCAAACCCTTATGGTATTATATAGTTTGCTCTTATATTAAAAAAACGT
GCGAAGGCCAAGTGAACCAGCATTTGTGCATTTGTGTTGATTCATCATTT
CGGAGCAAAAGAATTTATTGTAAACAGTACTAAATGTAAACCAAACATTA
TTTTACCAAACTGAAACAAACTAAAACGGAAACAGATCCCAAACACAAAC
GTTTGATCTTTTTTGAGCATTGATATTTTTTCGCATGGTTAATGGACCAA
TAAATTTGTTTAATTCTTCAACTTTTTTAAGTTCTTCCTTTGAAAATCAT
TTGCTGTATCAAAATTTTGACGAAAATCTTTTATTTTTGAATACAATTTT
ATCGTTTTGTTTTGATTTTTAAGAGAATTGACATTTAATCGGAGAAAAGG
GAGCATATACATTTTCCAGGTGAGTAAACCATTTACTACCAATTTGATAG
ATTTTGTTCTTTTGATAAATTGGACTCGTATTTTAATCATTATTTGGCTT
TGCTTGATTGAAAAAGTGATTTTTTCAGGAGCATCTTAAGAAATATTATT
GCAATCGTTAAAAGATAATGATATGTTTTGTTTGTTTAATGATATTTTGA
ATTGGATATTTGCTATTGAGCACCTGGCTGACTGCTTTCTCGCTATTCAA
ATTGTTACAAATTAAAAAAAGAATCATTAGAAACCCCATAACTCGAACAC
GCAACCTAAATATTTTATTTGAGTGATACACGGTGAATCTACCATTGAGT
TTAAAGCCCCGAAGAAATTAAAATTGAAACTTTTGGATGGGAAATGAAGT
CACTTAGTGTCTATCTGAAACGTGTAACCTGCGTGGTTTTCACATAAACG
CCAGAGTGAAAGAAATATTCATCGCTAGATTTCGAAAAATACGCCACGTG
AAAACAAAGAAAGCACTAGATTCAATCCGTTATTCTGAATACGCAAATCT
TTAATGCTTTACTTTTTCTTGCTTGAGAAGGGCTGAAGATTTTTCTTAGA
GCCCTTTGAGCCTTAAACTCAATGTACCCATTGTACTCTGTCACATATTC
TTGTCGCTATTAAATTTTAATTGTCTTTCTTTCTTTTCATTCAGCATGAA
AGCTCTTCACGTGGGAGTGATGTTACTCCTACTTGTGGCTTTGATCGATT
GTCGGGCTATCAAAAAAGGTATACTTTTATTCAATGTTTTTTACCTAGCT
AAGGAATCTTCCTGAATTTTCAATGCAATGAAAGTAGAAAGAGCATCCCT
TCTCGGTTACCTTTTCATGTTGTAATGATCCTTCTTTGTTATGTTTTTCG
CTAAATTCGTCTTCACTGTCGATGCATAAAATTTCATTTACCTTATGGGG
AGGAAAATAGTCATGATTTATCTATTTATTTCGGTCTCGATTATTTGGCC
CCGATTCTTTGGCGCCTTTTCATAAATTATCTTGAGTGCAACGACTGCCT
CGTTTTGAAACCATTGTCAAGGTGACTAAATTCCTTGGGTCTTCGAGTGC
TACTTTCTATAAGTAGAGTAAACTTCTTATGAACTCCTCTGGGAATCAAT
TACCACAGTAATATTTTGAAAACGAGGAGTTGCTAGTGACGTAATTTATG
GAAAGGTTTTATAAAAGTAAATATTTTCTGTGTTTGCATGATTTTAAGAC
AAATTCTACAGCTTGATTTTGTTTTGGCTAGGTGTTATTTTCTTCTCTCC
TAATACTGTATATGATTATATGTACGGCCTTGCCCCCCATTCTTTGCTTA
CAATATATGCACGACCTAATCATCCAAGTTAAAACTGCAATGCATGAGAC
AGTATCAAATTAAAATAGTCTAGAGTAATCTTAGACCAATTCTAGTCAGG
CGTGATGTGTGAACTTAAGGGATTTTTCGAAATAAAGAATAAAGCAATTT
CGGAACAAATTTTGAAAAAAAACTTTTTTGAAATTTTTGAATAATTCCCT
TTACTTTTTTAGGGAAAGATCACAAAAAGTCTTCAAAGTTATCACATCAT
GCTCGTAAATTTGCTACCGAAGCCTCGAAAAGTATTTATCAGCATGCGCT
AGACGAAACTAAAAAAGACTTGGGAGAGGCGATAGATAGTGCAGTTCAAG
CATATACTGAACAGACTATTGGAGGTAGGATACATACAAGGCTAACAAAG
TGAACTTCGCCATATTTTAGAATACCTGCGACTCACAACCCCAACCCCCC
GGTCACGAGTCCCTGATGTAACTCACTGGAAATAAATGGAACCTTTTCCC
AATTATTACAATAGATAACATCCTGTTCAAAGAATGAATGTTCTATCCCA
TTTCATAATGTGCTTCTCATTGTAAATCCACTCTCCATACATTTAACGAG
ATGTACATACCCCTAGACTCGTCATTTTTGAGCATTTTCACAAAGACAAT
TTTTACATAGAGATGACCTAGAATAGATTTGCATGTCTTACAACAACAAC
AACACATCTACTGTAGAAAAATGCCAAAAATAACTTGTATCGCGCATGTA
TCGTCATTTAACCAAACGCATTATAAACAGGATTTAGCTGAACAATCTAA
AAAAGCAAACACTTTCTTACACCATCAACTCCATTATTCGACCAAACTTC
TTCATTTTTCAAAGGTCATAAAGGCAAAAAGAAAGAAGTCACGCCAGATA
CATCTTCAGAGGACCAAAGTAAACGACATGTCCAAAGTTATAATGATCCT
TTAGCTGAGCAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACAACC
AGGCCATGTTCCACAAAACTTAAATGGGATTATCCAAAAATATAAACCAA
AGAAAGTTCAAGATGATAAGAAAAACAAAAACAAAAACAAACAAGACAAT
AAGCAGTCATATGCTGCAGGAACTTGTAAGTTAATAAAATTCCTTTCCTT
CAGCAGTGTAACCCTTTCATAAATTTAAGTTTGGTTAAACCCTTCTTAAA
CTAATTTTTCAAGATTGTGCTTTTCTCAGATGCTTTTTTATACTTTGAGA
TAGTTCTGTTAGTTTTAAACTTCGTAGATTAAAGTGTTACGATTGATGAA
ATTGAGATTCAGTGTAGTTTTGACATCTTTCATTCCCTTTAGCCGATTCA
GAAAATTCAGAGGAAGCACCTGATGAAGCTGAGGCACCACCACCAGGAGG
TGCCCCACCCGCAGGTGGTAACCCACCACCTCCAGGAGGTGCTCAGCCAC
CTCCTGCTGGAGGGCAGCCCACAACTACTCCAGCACCACCTCCTGCTGGT
GATGATGATGACAGTGATGATAGCGATGATGATGCTCAGCCACCTGAACA
AAAACCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCAGGTGGTGCTCCTC
CACCACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGCCCCTCCACCACCA
GGTGGTGTCCCACCCCCTCCAGGTGGTGCTCCCCCACCACCAGCAGGAAA
GAAACCACCAACAGAAGCCAAATCTGACGGAGATGATCAAGAAGATTTGA
AAGCCTTACTAGATGAAAGTATTGGTAAGATGTCCAGCCATTCACAACGA
ATTCTAAAATAAAGACTGGAATGGAAAAGGAAACGATCTAGAACGTTGAA
GATCCGAAAAACCGGATTTTCTTCAAGGTTGAAGAGATTCTTTCAGATGT
CAAATAATGGCTGCTGCAGATATGGAAATTTGGAAACCTCGTTAAAAAAT
CAGATTCCCAATTCCAGTCTTAATTTTGGAGTTCGTTGATCAAATCAGTT
AAATCTAAAAGTTATTCAAAAATAAAATCTCGATGCATCAAAAGCTAATA
GATTCTAATTAGTCACTTTTGAGTATCACTTCAATATTCAAATAGGTCAA
AAAACCTCCTTTTCTTTCTTTTCATCTATTTAGGAAACTTAGTCAAAGCA
AATCAAGCTGTAGAAACACTCTTATCTGCCAGCAGTGGAGGTAAGAGCTT
TTTACCGTTTTCTTCTCATGCCAATACTGCACCCACTAAACCAGGAATTT
CCTCATCTTATCTTTGTAATTATTTTTACTTTTAGGATCATCTAGTGGAC
CCTCTCCATCTGGAGGTGCTCCCCCACCCGGTGGTGCTCCTCCTCCTCCA
GGCGGTGCCCCTCCACCCCCAGGTGGCGTTCCTCCTCCAGGCGGTGCCCC
TCCTCCAGGCGGTGCTCCTCCTCCAGGCGGTGCCCCTCCTCCAGGTGGTG
CCCCTCCACCCCCAGGTGGTGCCCCTCCACCCCCAGGCGGTGCCCCTCCT
CCAGGCGGTGCCCCTCCACCAGGTGGTGCTCCTCCTCCAGGCGGTGCCCC
TCCACCACCAGGTGGCGCCCCTCCCACTGAGGCTAAACCAGATGAGGCTG
CTGGTGCTCCTCCCCCTCCTGGTGGTGCCGGTGGCGCTCCTGGAGCAGCA
GGTGGCAAAGGTGGAGACTGCACTGGTTGCGAAAACCCATACTGCTGTGC
CGAACCCTTTGGAGCTAGCTCAACTGTCATTCATTTCCCAGCACCGCCAT
GTGCATGTGCTCCCCCACCACCACCTTGTATGGCAATGCCATGTCCACCA
CCCCCTCCTCCATGCCCTNNNNNNNNNNNNNNNNNNNNNACCATGTCCTG
CACCTTGTCCAGTAGCATGTGCACCTCCACCACCACCACCTTGTGCACCA
GCCTGTATGCCCCCAGCTTGTGGACCAACCTGCAGTCGCGATTGTTGTGA
GTGGGATCAAGTCGTACCATCAGGTGCATTGGCAGGGGCCCTCGCTAACT
ATGCTAAAGATCATGGCAAATAAATTGGACGAAACAGACATTCTTTAATA
TTCCTATCCTAAACACAATGTACATTAATATTTTCCTTTCACACTTGCAT
GTTTATATTTTATGACAAAGTTTTTTTTCTGTTTATAATTTGACCGAAAT
GAATAATTTTAGAGACGAAACCAAAAAAGGTTAATGGTGATAGTGGGTGC
AGTGGTGTGTTTTCTACTTTCGTATAATTTGTCTATGATCGCTAACTGAA
TCACAATGACACACAAACACACACGCTTAAACCAAGCAAATGTTTATTTT
GTCATTTAGGTTTACCACTGCCTCCACTATCACCATTTCCATGCAGTACT
TGTACTATAATATGTTTACCTGGCTGTGATACAACTTGTTGTCATGGGGG
TAACAAGAAAAATAAAACTTTCAATGCTAAACTACATCATCGTAAAAAGA
CACGGCATCATGATAGAAAATCTCATAAAGGATATATTTCCGATGATGAT
AAAAGACATAACGATAATAACAATATGGTTGCCCCTACCATGCCTTCATT
GCCTTTATCCAGATTTGTAGTGGCCCCAACAATGCCTGCACCACCGACTG
TATGTTGTGACAAAGACCATCCTGTAATCTTGAACTGTGATATCCCACCA
TGCCAACCGACCAATTGCATCTATTGTTATAATCCTGGTTCACCGGTCGT
CGGGAATAGCCTAATTATACCGAATGCAGGCTGAAAGAGGATAATTTGTA
CATGGGATATTTACGTAGAGGAGCTGATGTATATTCATGTATAACTAACA
TTATAACTGATGCATGTCCATCATATCCAACCTTATGTCGTCATGGAGAC
GAACCGTTCGTTCTGAGCATGCGCACATGAACGTGAATTGTGACTCTATG
GATAACTATCTACGGATGAACTAACTACAACATAATTATCGTATATCATA
GTTTTGTTATCGAATCTTTTGCTAAATGGCCAGTTAGTTCTATAGTTGGC
GCATATATTACTTTTAAGCAAAGTAGGGCCTAGTTGGTGACATAAAGGCT
TTTCTTTAGAACACGTTGACTACACAGATATCTGTAAAGCCCGAAGGGCT
AGATAGGCAACTTTAAGCTTTCTCCACAGCAAAAAAAAGTGAAGCAAAAA
TTTGACTTTTTAAATTTCGTGCCGATGGATAGGATCTAGCATTTTAATTG
TTTTTGGAGCGCGAGATCAAAAAAGTAGGCGGCAAACGCTATTTCACATC
TCTCAAACCGGTGGAATTGCATATTTTACTCACGTGACTTTGGTAGGAAA
TCCTTCCAAATCTAGGCTTCACTTTTCGATAAAAGCTGCGAATCTAGCCC
TTCGGGCTTTACAGATCTGTGGTTGACTACTGATTTTTTATTGAAAAATT
GACAAGAAATCTTTAAGAACAAGCTTTGTACTTAAGGAAAGCCTTCTAGT
TAAAGACTTTGCTCAGCGAAAATTTAGTATAGTTTTGTTACTAGATAATG
ACACTTTTAGGACAATTTTCATATTTATAAAAGATACAAATATAAGGCAT
TTACACTTATGTCTTGAATGAAAATTTAACATAATTTTTGGATAAAATAT
TC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067018TCONS_00067018Clytia hemisphaericatranscript
TCONS_00067017TCONS_00067017Clytia hemisphaericatranscript
TCONS_00067016TCONS_00067016Clytia hemisphaericatranscript
TCONS_00067015TCONS_00067015Clytia hemisphaericatranscript
TCONS_00067014TCONS_00067014Clytia hemisphaericatranscript
TCONS_00067013TCONS_00067013Clytia hemisphaericatranscript
TCONS_00067012TCONS_00067012Clytia hemisphaericatranscript
TCONS_00067011TCONS_00067011Clytia hemisphaericatranscript
TCONS_00067010TCONS_00067010Clytia hemisphaericatranscript
TCONS_00067009TCONS_00067009Clytia hemisphaericatranscript
TCONS_00067008TCONS_00067008Clytia hemisphaericatranscript
TCONS_00067007TCONS_00067007Clytia hemisphaericatranscript
TCONS_00067006TCONS_00067006Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067009-proteinTCONS_00067009-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:878768..887369 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.32	2.13	0.76	0.51	13.39	12.1	119.92	121.93	16.72	25.8	89.16	64.1	116.9	108.77	69.63	253.58	122.66	117.3	19.53	20.86	59.02	62.14	35.04	38.89	62.42	63.58	12.87	4.75	0.8	1.61