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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067011 ID=TCONS_00067011|Name=TCONS_00067011|organism=Clytia hemisphaerica|type=transcript|length=3141bp ctttgaaaatcatttgctgtatcaaaattttgacgaaaatcttttatttt tgaatacaattttatcgttttgttttgatttttaagagAATTGACATTTA ATCGGAGAAAAGGGAGCATATACATTTTCCAGCATGAAAGCTCTTCACGT GGGAGTGATGTTACTCCTACTTGTGGCTTTGATCGATTGTCGGGCTATCA AAAAAGgtCATAAAGGCAAAAAGAAAGAAGTCACGCCAGATACATCTTCA GAGGACCAAAGTAAACGACATGTCCAAAGTTATAATGATCCTTTAGCTGA GCAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACAACCAGGCCATG TTCCACAAAACTTAAATGGGATTATCCAAAAATATAAACCAAAGAAAGTT CAAGAtgataagaaaaacaaaaacaaaaacaaacaagacAATAAGCAGTC ATATGCTGCAGGAACTTCCGATTCAGAAAATTCAGAGGAAGCACCTGATG AAGCTGAGGCACCACCACCAGGAGGTGCCCCACCCGCAGGTGGTAACCCA CCACCTCCAGGAGGTGCTCAGCCACCTCCTGCTGGAGGGCAGCCCACAAC TACTCCAGCACCACCTCCTGCTGGTGATGATGATGACAGTGATGATAGCG ATGATGATGCTCAGCCACCTGAACAAAAACCAGCCCCAGGAGGCGGCTCT CCTCCTCCTCCAGGTGGTGCTCCTCCACCACCAGGAGGTGCCCCACCCCC TCCAGGCGGTGCCCCTCCACCACCAGGTGGTGTCCCACCCCCTCCAGGTG GTGCTCCCCCACCACCAGCAGGAAAGAAACCACCAACAGAAGCCAAATCT GACGGAGATGATCAAGAAGATTTGAAAGCCTTACTAGATGAAAGTATTGG AAACTTAGTCAAAGCAAATCAAGCTGTAGAAACACTCTTATCTGCCAGCA GTGGAGgaTCATCTAGTGGACCCTCTCCATCTGGAGGTGCTCCCCCACCC GGTGGTGCTCCTCCTCCTCCAGGCGGTGCCCCTCCACCCCCAGGCGGTGC CCCTCCACCAGGTGGTGCTCCTCCTCCAGGCGGTGCCCCTCCACCACCAG GTGGCGCCCCTCCCACTGAGGCTAAACCAGATGAGGCTGCTGGTGCTCCT CCCCCTCCTGGTGGTGCCGGTGGCGCTCCTGGAGCAGCAGGTGGCAAAGG TGGAGACTGCACTGGTTGCGAAAACCCATACTGCTGTGCCGAACCCTTTG GAGCTAGCTCAACTGTCATTCATTTCCCAGCACCGCCATGTGCATGTGCT CCCCCACCACCACCTTGTATGGCAATGCCATGTCCACCACCCCCTCCTCC ATGCCCTNNNNNNNNNNNNNNNNNNNNNACCATGTCCTGCACCTTGTCCA GTAGCATGTGCacctccaccaccaccacctTGTGCACCAGCCTGTATGCC CCCAGCTTGTGGACCAACCTGCAGTCGCGATTGTTGTGAGTGGGATCAAG TCGTACCATCAGGTGCATTGGCAGGGGCCCTCGCTAACTATGCTAAAGAT CATGGCAAATAAATTGGACGAAACAGACATTCTTTAATATTCCTATCCTA AACACAATGTACATTAATATTTTCCTTTCACACTTGCATGTTTATATTTT atgacaaagttttttttctgtttataaTTTGACCGAAATGAATAATTTTA GAGACGAAACCAAAAAAGGTTAATGGTGATAGTGGGTGCAGTGGTGTGTT TTCTACTTTCGTATAATTTGTCTATGATCGCTAACTGAATCACAATGACA CACAAACACACACGCTTAAACCAAGCAAATGTTTATTTTGTCATTTAGGT TTACCACTGCCTCCACTATCACCATTTCCATGCAGTACTTGTACTATAAT ATGTTTACCTGGCTGTGATACAACTTGTTGTCATGGGGgtaacaagaaaa ataaaactttcaatGCTAAACTACATCATCGTAAAAAGACACGGCATCAT GATAGAAAATCTCATAAAGGATATATTTCCGATGATGATAAAAGACATAA CGATAATAACAATATGGTTGCCCCTACCATGCCTTCATTGCCTTTATCCA GATTTGTAGTGGCCCCAACAATGCCTGCACCACCGACTGTATGTTGTGAC AAAGACCATCCTGTAATCTTGAACTGTGATATCCCACCATGCCAACCGAC CAATTGCATCTATTGTTATAATCCTGGTTCACCGGTCGTCGGGAATAGCC TAATTATACCGAATGCAGGCTGAAAGAGGATAATTTGTACATGGGATATT TACGTAGAGGAGCTGATGTATATTCATGTATAACTAACATTATAACTGAT GCATGTCCATCATATCCAACCTTATGTCGTCATGGAGACGAACCGTTCGT TCTGAGCATGCGCACATGAACGTGAATTGTGACTCTATGGATAACTATCT ACGGATGAACTAACTACAACATAATTATCGTATATCATAGTTTTGTTATC GAATCTTTTGCTAAATGGCCAGTTAGTTCTATAGTTGGCGCATATATTAC TTTTAAGCAAAGTAGGGCCTAGTTGGTGACATAAAGGCTTTTCTTTAGAA CACGTTGACtacacagatatctgtaaagcccgaagggctagataggcaac tttaagctttctccacagcaaaaaaaagtgaagcaaaaatttgacttttt aaatttcgtgccgatggataggatctagcattttaattgtttttggagcg cgagatcaaaaaagtaggcggcaaacgctatttcacatctctcaaaccgg tggaATTGCATATTTTactcacgtgactttggtaggaaatccttccaaat ctaggcttcacttttcgataaaagctgcgaatctagcccttcgggcttta cagatctgtggttgACTActgattttttattgaaaaattgacaaGAAATC TTTAAGAACAAGCTTTGTACTTAAGGAAAGCCTTCTAGTTAAAGACTTTG CTCAGCGAAAATTTAGTATAGTTTTGTTACTAGATAATGACACTTTTAGG ACAATTTTCATATTTATAAAAGATACAAATATAAGGCATTTACACTTATG tcttgaatgaaaatttaacataatttttggataaaatattc Run BLAST on NCBI transcript from alignment at scaffold_462:878768..884832- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067011 ID=TCONS_00067011|Name=TCONS_00067011|organism=Clytia hemisphaerica|type=transcript|length=6065bp|location=Sequence derived from alignment at scaffold_462:878768..884832- (Clytia hemisphaerica) CTTTGAAAATCATTTGCTGTATCAAAATTTTGACGAAAATCTTTTATTTT
TGAATACAATTTTATCGTTTTGTTTTGATTTTTAAGAGAATTGACATTTA
ATCGGAGAAAAGGGAGCATATACATTTTCCAGGTGAGTAAACCATTTACT
ACCAATTTGATAGATTTTGTTCTTTTGATAAATTGGACTCGTATTTTAAT
CATTATTTGGCTTTGCTTGATTGAAAAAGTGATTTTTTCAGGAGCATCTT
AAGAAATATTATTGCAATCGTTAAAAGATAATGATATGTTTTGTTTGTTT
AATGATATTTTGAATTGGATATTTGCTATTGAGCACCTGGCTGACTGCTT
TCTCGCTATTCAAATTGTTACAAATTAAAAAAAGAATCATTAGAAACCCC
ATAACTCGAACACGCAACCTAAATATTTTATTTGAGTGATACACGGTGAA
TCTACCATTGAGTTTAAAGCCCCGAAGAAATTAAAATTGAAACTTTTGGA
TGGGAAATGAAGTCACTTAGTGTCTATCTGAAACGTGTAACCTGCGTGGT
TTTCACATAAACGCCAGAGTGAAAGAAATATTCATCGCTAGATTTCGAAA
AATACGCCACGTGAAAACAAAGAAAGCACTAGATTCAATCCGTTATTCTG
AATACGCAAATCTTTAATGCTTTACTTTTTCTTGCTTGAGAAGGGCTGAA
GATTTTTCTTAGAGCCCTTTGAGCCTTAAACTCAATGTACCCATTGTACT
CTGTCACATATTCTTGTCGCTATTAAATTTTAATTGTCTTTCTTTCTTTT
CATTCAGCATGAAAGCTCTTCACGTGGGAGTGATGTTACTCCTACTTGTG
GCTTTGATCGATTGTCGGGCTATCAAAAAAGGTATACTTTTATTCAATGT
TTTTTACCTAGCTAAGGAATCTTCCTGAATTTTCAATGCAATGAAAGTAG
AAAGAGCATCCCTTCTCGGTTACCTTTTCATGTTGTAATGATCCTTCTTT
GTTATGTTTTTCGCTAAATTCGTCTTCACTGTCGATGCATAAAATTTCAT
TTACCTTATGGGGAGGAAAATAGTCATGATTTATCTATTTATTTCGGTCT
CGATTATTTGGCCCCGATTCTTTGGCGCCTTTTCATAAATTATCTTGAGT
GCAACGACTGCCTCGTTTTGAAACCATTGTCAAGGTGACTAAATTCCTTG
GGTCTTCGAGTGCTACTTTCTATAAGTAGAGTAAACTTCTTATGAACTCC
TCTGGGAATCAATTACCACAGTAATATTTTGAAAACGAGGAGTTGCTAGT
GACGTAATTTATGGAAAGGTTTTATAAAAGTAAATATTTTCTGTGTTTGC
ATGATTTTAAGACAAATTCTACAGCTTGATTTTGTTTTGGCTAGGTGTTA
TTTTCTTCTCTCCTAATACTGTATATGATTATATGTACGGCCTTGCCCCC
CATTCTTTGCTTACAATATATGCACGACCTAATCATCCAAGTTAAAACTG
CAATGCATGAGACAGTATCAAATTAAAATAGTCTAGAGTAATCTTAGACC
AATTCTAGTCAGGCGTGATGTGTGAACTTAAGGGATTTTTCGAAATAAAG
AATAAAGCAATTTCGGAACAAATTTTGAAAAAAAACTTTTTTGAAATTTT
TGAATAATTCCCTTTACTTTTTTAGGGAAAGATCACAAAAAGTCTTCAAA
GTTATCACATCATGCTCGTAAATTTGCTACCGAAGCCTCGAAAAGTATTT
ATCAGCATGCGCTAGACGAAACTAAAAAAGACTTGGGAGAGGCGATAGAT
AGTGCAGTTCAAGCATATACTGAACAGACTATTGGAGGTAGGATACATAC
AAGGCTAACAAAGTGAACTTCGCCATATTTTAGAATACCTGCGACTCACA
ACCCCAACCCCCCGGTCACGAGTCCCTGATGTAACTCACTGGAAATAAAT
GGAACCTTTTCCCAATTATTACAATAGATAACATCCTGTTCAAAGAATGA
ATGTTCTATCCCATTTCATAATGTGCTTCTCATTGTAAATCCACTCTCCA
TACATTTAACGAGATGTACATACCCCTAGACTCGTCATTTTTGAGCATTT
TCACAAAGACAATTTTTACATAGAGATGACCTAGAATAGATTTGCATGTC
TTACAACAACAACAACACATCTACTGTAGAAAAATGCCAAAAATAACTTG
TATCGCGCATGTATCGTCATTTAACCAAACGCATTATAAACAGGATTTAG
CTGAACAATCTAAAAAAGCAAACACTTTCTTACACCATCAACTCCATTAT
TCGACCAAACTTCTTCATTTTTCAAAGGTCATAAAGGCAAAAAGAAAGAA
GTCACGCCAGATACATCTTCAGAGGACCAAAGTAAACGACATGTCCAAAG
TTATAATGATCCTTTAGCTGAGCAAAACCCTGATGAAGATGAAGCTCATC
CAATGCCACAACCAGGCCATGTTCCACAAAACTTAAATGGGATTATCCAA
AAATATAAACCAAAGAAAGTTCAAGATGATAAGAAAAACAAAAACAAAAA
CAAACAAGACAATAAGCAGTCATATGCTGCAGGAACTTGTAAGTTAATAA
AATTCCTTTCCTTCAGCAGTGTAACCCTTTCATAAATTTAAGTTTGGTTA
AACCCTTCTTAAACTAATTTTTCAAGATTGTGCTTTTCTCAGATGCTTTT
TTATACTTTGAGATAGTTCTGTTAGTTTTAAACTTCGTAGATTAAAGTGT
TACGATTGATGAAATTGAGATTCAGTGTAGTTTTGACATCTTTCATTCCC
TTTAGCCGATTCAGAAAATTCAGAGGAAGCACCTGATGAAGCTGAGGCAC
CACCACCAGGAGGTGCCCCACCCGCAGGTGGTAACCCACCACCTCCAGGA
GGTGCTCAGCCACCTCCTGCTGGAGGGCAGCCCACAACTACTCCAGCACC
ACCTCCTGCTGGTGATGATGATGACAGTGATGATAGCGATGATGATGCTC
AGCCACCTGAACAAAAACCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCA
GGTGGTGCTCCTCCACCACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGC
CCCTCCACCACCAGGTGGTGTCCCACCCCCTCCAGGTGGTGCTCCCCCAC
CACCAGCAGGAAAGAAACCACCAACAGAAGCCAAATCTGACGGAGATGAT
CAAGAAGATTTGAAAGCCTTACTAGATGAAAGTATTGGTAAGATGTCCAG
CCATTCACAACGAATTCTAAAATAAAGACTGGAATGGAAAAGGAAACGAT
CTAGAACGTTGAAGATCCGAAAAACCGGATTTTCTTCAAGGTTGAAGAGA
TTCTTTCAGATGTCAAATAATGGCTGCTGCAGATATGGAAATTTGGAAAC
CTCGTTAAAAAATCAGATTCCCAATTCCAGTCTTAATTTTGGAGTTCGTT
GATCAAATCAGTTAAATCTAAAAGTTATTCAAAAATAAAATCTCGATGCA
TCAAAAGCTAATAGATTCTAATTAGTCACTTTTGAGTATCACTTCAATAT
TCAAATAGGTCAAAAAACCTCCTTTTCTTTCTTTTCATCTATTTAGGAAA
CTTAGTCAAAGCAAATCAAGCTGTAGAAACACTCTTATCTGCCAGCAGTG
GAGGTAAGAGCTTTTTACCGTTTTCTTCTCATGCCAATACTGCACCCACT
AAACCAGGAATTTCCTCATCTTATCTTTGTAATTATTTTTACTTTTAGGA
TCATCTAGTGGACCCTCTCCATCTGGAGGTGCTCCCCCACCCGGTGGTGC
TCCTCCTCCTCCAGGCGGTGCCCCTCCACCCCCAGGTGGCGTTCCTCCTC
CAGGCGGTGCCCCTCCTCCAGGCGGTGCTCCTCCTCCAGGCGGTGCCCCT
CCTCCAGGTGGTGCCCCTCCACCCCCAGGTGGTGCCCCTCCACCCCCAGG
CGGTGCCCCTCCTCCAGGCGGTGCCCCTCCACCAGGTGGTGCTCCTCCTC
CAGGCGGTGCCCCTCCACCACCAGGTGGCGCCCCTCCCACTGAGGCTAAA
CCAGATGAGGCTGCTGGTGCTCCTCCCCCTCCTGGTGGTGCCGGTGGCGC
TCCTGGAGCAGCAGGTGGCAAAGGTGGAGACTGCACTGGTTGCGAAAACC
CATACTGCTGTGCCGAACCCTTTGGAGCTAGCTCAACTGTCATTCATTTC
CCAGCACCGCCATGTGCATGTGCTCCCCCACCACCACCTTGTATGGCAAT
GCCATGTCCACCACCCCCTCCTCCATGCCCTNNNNNNNNNNNNNNNNNNN
NNACCATGTCCTGCACCTTGTCCAGTAGCATGTGCACCTCCACCACCACC
ACCTTGTGCACCAGCCTGTATGCCCCCAGCTTGTGGACCAACCTGCAGTC
GCGATTGTTGTGAGTGGGATCAAGTCGTACCATCAGGTGCATTGGCAGGG
GCCCTCGCTAACTATGCTAAAGATCATGGCAAATAAATTGGACGAAACAG
ACATTCTTTAATATTCCTATCCTAAACACAATGTACATTAATATTTTCCT
TTCACACTTGCATGTTTATATTTTATGACAAAGTTTTTTTTCTGTTTATA
ATTTGACCGAAATGAATAATTTTAGAGACGAAACCAAAAAAGGTTAATGG
TGATAGTGGGTGCAGTGGTGTGTTTTCTACTTTCGTATAATTTGTCTATG
ATCGCTAACTGAATCACAATGACACACAAACACACACGCTTAAACCAAGC
AAATGTTTATTTTGTCATTTAGGTTTACCACTGCCTCCACTATCACCATT
TCCATGCAGTACTTGTACTATAATATGTTTACCTGGCTGTGATACAACTT
GTTGTCATGGGGGTAACAAGAAAAATAAAACTTTCAATGCTAAACTACAT
CATCGTAAAAAGACACGGCATCATGATAGAAAATCTCATAAAGGATATAT
TTCCGATGATGATAAAAGACATAACGATAATAACAATATGGTTGCCCCTA
CCATGCCTTCATTGCCTTTATCCAGATTTGTAGTGGCCCCAACAATGCCT
GCACCACCGACTGTATGTTGTGACAAAGACCATCCTGTAATCTTGAACTG
TGATATCCCACCATGCCAACCGACCAATTGCATCTATTGTTATAATCCTG
GTTCACCGGTCGTCGGGAATAGCCTAATTATACCGAATGCAGGCTGAAAG
AGGATAATTTGTACATGGGATATTTACGTAGAGGAGCTGATGTATATTCA
TGTATAACTAACATTATAACTGATGCATGTCCATCATATCCAACCTTATG
TCGTCATGGAGACGAACCGTTCGTTCTGAGCATGCGCACATGAACGTGAA
TTGTGACTCTATGGATAACTATCTACGGATGAACTAACTACAACATAATT
ATCGTATATCATAGTTTTGTTATCGAATCTTTTGCTAAATGGCCAGTTAG
TTCTATAGTTGGCGCATATATTACTTTTAAGCAAAGTAGGGCCTAGTTGG
TGACATAAAGGCTTTTCTTTAGAACACGTTGACTACACAGATATCTGTAA
AGCCCGAAGGGCTAGATAGGCAACTTTAAGCTTTCTCCACAGCAAAAAAA
AGTGAAGCAAAAATTTGACTTTTTAAATTTCGTGCCGATGGATAGGATCT
AGCATTTTAATTGTTTTTGGAGCGCGAGATCAAAAAAGTAGGCGGCAAAC
GCTATTTCACATCTCTCAAACCGGTGGAATTGCATATTTTACTCACGTGA
CTTTGGTAGGAAATCCTTCCAAATCTAGGCTTCACTTTTCGATAAAAGCT
GCGAATCTAGCCCTTCGGGCTTTACAGATCTGTGGTTGACTACTGATTTT
TTATTGAAAAATTGACAAGAAATCTTTAAGAACAAGCTTTGTACTTAAGG
AAAGCCTTCTAGTTAAAGACTTTGCTCAGCGAAAATTTAGTATAGTTTTG
TTACTAGATAATGACACTTTTAGGACAATTTTCATATTTATAAAAGATAC
AAATATAAGGCATTTACACTTATGTCTTGAATGAAAATTTAACATAATTT
TTGGATAAAATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067011-exon-scaffold_462-1575043694:884701..884832 | TCONS_00067011-exon-scaffold_462-1575043694:884701..884832 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1575043694:883952..884025 | TCONS_00067011-exon-scaffold_462-1575043694:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1575043694:882245..882505 | TCONS_00067011-exon-scaffold_462-1575043694:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1575043694:881596..882027 | TCONS_00067011-exon-scaffold_462-1575043694:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1575043694:881180..881236 | TCONS_00067011-exon-scaffold_462-1575043694:881180..881236 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1575043694:880998..881084 | TCONS_00067011-exon-scaffold_462-1575043694:880998..881084 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1575043694:878768..880865 | TCONS_00067011-exon-scaffold_462-1575043694:878768..880865 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1510915933:884701..884832 | TCONS_00067011-exon-scaffold_462-1510915933:884701..884832 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1510915933:883952..884025 | TCONS_00067011-exon-scaffold_462-1510915933:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1510915933:882245..882505 | TCONS_00067011-exon-scaffold_462-1510915933:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1510915933:881596..882027 | TCONS_00067011-exon-scaffold_462-1510915933:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1510915933:881180..881236 | TCONS_00067011-exon-scaffold_462-1510915933:881180..881236 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1510915933:880998..881084 | TCONS_00067011-exon-scaffold_462-1510915933:880998..881084 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1510915933:878768..880865 | TCONS_00067011-exon-scaffold_462-1510915933:878768..880865 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1491911889:884701..884832 | TCONS_00067011-exon-scaffold_462-1491911889:884701..884832 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1491911889:883952..884025 | TCONS_00067011-exon-scaffold_462-1491911889:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1491911889:882245..882505 | TCONS_00067011-exon-scaffold_462-1491911889:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1491911889:881596..882027 | TCONS_00067011-exon-scaffold_462-1491911889:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1491911889:881180..881236 | TCONS_00067011-exon-scaffold_462-1491911889:881180..881236 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1491911889:880998..881084 | TCONS_00067011-exon-scaffold_462-1491911889:880998..881084 | Clytia hemisphaerica | exon |
TCONS_00067011-exon-scaffold_462-1491911889:878768..880865 | TCONS_00067011-exon-scaffold_462-1491911889:878768..880865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_462 | supercontig | scaffold_462:878768..884832 - |
Blast
The following BLAST results are available for this feature:
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