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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067013 ID=TCONS_00067013|Name=TCONS_00067013|organism=Clytia hemisphaerica|type=transcript|length=3092bp ttaagttcttcctttgaaaatcatttgctgtatcaaaattttgacgaaaa tcttttatttttgaatacaattttatcgttttgttttgatttttaagagA ATTGACATTTAATCGGAGAAAAGGGAGCATATACATTTTCCAGCATGAAA GCTCTTCACGTGGGAGTGATGTTACTCCTACTTGTGGCTTTGATCGATTG TCGGGCTATCAAAAAAGgtCATAAAGGCAAAAAGAAAGAAGTCACGCCAG ATACATCTTCAGAGGACCAAAGTAAACGACATGTCCAAAGTTATAATGAT CCTTTAGCTGAGCAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACA ACCAGGCCATGTTCCACAAAACTTAAATGGGATTATCCAAAAATATAAAC CAAAGAAAGTTCAAGAtgataagaaaaacaaaaacaaaaacaaacaagac AATAAGCAGTCATATGCTGCAGGAACTTCCGATTCAGAAAATTCAGAGGA AGCACCTGATGAAGCTGAGGCACCACCACCAGGAGGTGCCCCACCCGCAG GTGGTAACCCACCACCTCCAGGAGGTGCTCAGCCACCTCCTGCTGGAGGG CAGCCCACAACTACTCCAGCACCACCTCCTGCTGGTGATGATGATGACAG TGATGATAGCGATGATGATGCTCAGCCACCTGAACAAAAACCAGCCCCAG GAGGCGGCTCTCCTCCTCCTCCAGGTGGTGCTCCTCCACCACCAGGAGGT GCCCCACCCCCTCCAGGCGGTGCCCCTCCACCACCAGGTGGTGTCCCACC CCCTCCAGGTGGTGCTCCCCCACCACCAGCAGGAAAGAAACCACCAACAG AAGCCAAATCTGACGGAGATGATCAAGAAGATTTGAAAGCCTTACTAGAT GAAAGTATTGGAAACTTAGTCAAAGCAAATCAAGCTGTAGAAACACTCTT ATCTGCCAGCAGTGGAGgaTCATCTAGTGGACCCTCTCCATCTGGAGGTG CTCCCCCACCCGGTGGTGCTCCTCCTCCAGGCGGTGCCCCTCCACCACCA GGTGGCGCCCCTCCCACTGAGGCTAAACCAGATGAGGCTGCTGGTGCTCC TCCCCCTCCTGGTGGTGCCGGTGGCGCTCCTGGAGCAGCAGGTGGCAAAG GTGGAGACTGCACTGGTTGCGAAAACCCATACTGCTGTGCCGAACCCTTT GGAGCTAGCTCAACTGTCATTCATTTCCCAGCACCGCCATGTGCATGTGC TCCCCCACCACCACCTTGTATGGCAATGCCATGTCCACCACCCCCTCCTC CATGCCCTNNNNNNNNNNNNNNNNNNNNNACCATGTCCTGCACCTTGTCC AGTAGCATGTGCacctccaccaccaccacctTGTGCACCAGCCTGTATGC CCCCAGCTTGTGGACCAACCTGCAGTCGCGATTGTTGTGAGTGGGATCAA GTCGTACCATCAGGTGCATTGGCAGGGGCCCTCGCTAACTATGCTAAAGA TCATGGCAAATAAATTGGACGAAACAGACATTCTTTAATATTCCTATCCT AAACACAATGTACATTAATATTTTCCTTTCACACTTGCATGTTTATATTT TatgacaaagttttttttctgtttataaTTTGACCGAAATGAATAATTTT AGAGACGAAACCAAAAAAGGTTAATGGTGATAGTGGGTGCAGTGGTGTGT TTTCTACTTTCGTATAATTTGTCTATGATCGCTAACTGAATCACAATGAC ACACAAACACACACGCTTAAACCAAGCAAATGTTTATTTTGTCATTTAGG TTTACCACTGCCTCCACTATCACCATTTCCATGCAGTACTTGTACTATAA TATGTTTACCTGGCTGTGATACAACTTGTTGTCATGGGGgtaacaagaaa aataaaactttcaatGCTAAACTACATCATCGTAAAAAGACACGGCATCA TGATAGAAAATCTCATAAAGGATATATTTCCGATGATGATAAAAGACATA ACGATAATAACAATATGGTTGCCCCTACCATGCCTTCATTGCCTTTATCC AGATTTGTAGTGGCCCCAACAATGCCTGCACCACCGACTGTATGTTGTGA CAAAGACCATCCTGTAATCTTGAACTGTGATATCCCACCATGCCAACCGA CCAATTGCATCTATTGTTATAATCCTGGTTCACCGGTCGTCGGGAATAGC CTAATTATACCGAATGCAGGCTGAAAGAGGATAATTTGTACATGGGATAT TTACGTAGAGGAGCTGATGTATATTCATGTATAACTAACATTATAACTGA TGCATGTCCATCATATCCAACCTTATGTCGTCATGGAGACGAACCGTTCG TTCTGAGCATGCGCACATGAACGTGAATTGTGACTCTATGGATAACTATC TACGGATGAACTAACTACAACATAATTATCGTATATCATAGTTTTGTTAT CGAATCTTTTGCTAAATGGCCAGTTAGTTCTATAGTTGGCGCATATATTA CTTTTAAGCAAAGTAGGGCCTAGTTGGTGACATAAAGGCTTTTCTTTAGA ACACGTTGACtacacagatatctgtaaagcccgaagggctagataggcaa ctttaagctttctccacagcaaaaaaaagtgaagcaaaaatttgactttt taaatttcgtgccgatggataggatctagcattttaattgtttttggagc gcgagatcaaaaaagtaggcggcaaacgctatttcacatctctcaaaccg gtggaATTGCATATTTTactcacgtgactttggtaggaaatccttccaaa tctaggcttcacttttcgataaaagctgcgaatctagcccttcgggcttt acagatctgtggttgACTActgattttttattgaaaaattgacaaGAAAT CTTTAAGAACAAGCTTTGTACTTAAGGAAAGCCTTCTAGTTAAAGACTTT GCTCAGCGAAAATTTAGTATAGTTTTGTTACTAGATAATGACACTTTTAG GACAATTTTCATATTTATAAAAGATACAAATATAAGGCATTTACACTTAT Gtcttgaatgaaaatttaacataatttttggataaaatattc Run BLAST on NCBI transcript from alignment at scaffold_462:878768..884843- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067013 ID=TCONS_00067013|Name=TCONS_00067013|organism=Clytia hemisphaerica|type=transcript|length=6076bp|location=Sequence derived from alignment at scaffold_462:878768..884843- (Clytia hemisphaerica) TTAAGTTCTTCCTTTGAAAATCATTTGCTGTATCAAAATTTTGACGAAAA
TCTTTTATTTTTGAATACAATTTTATCGTTTTGTTTTGATTTTTAAGAGA
ATTGACATTTAATCGGAGAAAAGGGAGCATATACATTTTCCAGGTGAGTA
AACCATTTACTACCAATTTGATAGATTTTGTTCTTTTGATAAATTGGACT
CGTATTTTAATCATTATTTGGCTTTGCTTGATTGAAAAAGTGATTTTTTC
AGGAGCATCTTAAGAAATATTATTGCAATCGTTAAAAGATAATGATATGT
TTTGTTTGTTTAATGATATTTTGAATTGGATATTTGCTATTGAGCACCTG
GCTGACTGCTTTCTCGCTATTCAAATTGTTACAAATTAAAAAAAGAATCA
TTAGAAACCCCATAACTCGAACACGCAACCTAAATATTTTATTTGAGTGA
TACACGGTGAATCTACCATTGAGTTTAAAGCCCCGAAGAAATTAAAATTG
AAACTTTTGGATGGGAAATGAAGTCACTTAGTGTCTATCTGAAACGTGTA
ACCTGCGTGGTTTTCACATAAACGCCAGAGTGAAAGAAATATTCATCGCT
AGATTTCGAAAAATACGCCACGTGAAAACAAAGAAAGCACTAGATTCAAT
CCGTTATTCTGAATACGCAAATCTTTAATGCTTTACTTTTTCTTGCTTGA
GAAGGGCTGAAGATTTTTCTTAGAGCCCTTTGAGCCTTAAACTCAATGTA
CCCATTGTACTCTGTCACATATTCTTGTCGCTATTAAATTTTAATTGTCT
TTCTTTCTTTTCATTCAGCATGAAAGCTCTTCACGTGGGAGTGATGTTAC
TCCTACTTGTGGCTTTGATCGATTGTCGGGCTATCAAAAAAGGTATACTT
TTATTCAATGTTTTTTACCTAGCTAAGGAATCTTCCTGAATTTTCAATGC
AATGAAAGTAGAAAGAGCATCCCTTCTCGGTTACCTTTTCATGTTGTAAT
GATCCTTCTTTGTTATGTTTTTCGCTAAATTCGTCTTCACTGTCGATGCA
TAAAATTTCATTTACCTTATGGGGAGGAAAATAGTCATGATTTATCTATT
TATTTCGGTCTCGATTATTTGGCCCCGATTCTTTGGCGCCTTTTCATAAA
TTATCTTGAGTGCAACGACTGCCTCGTTTTGAAACCATTGTCAAGGTGAC
TAAATTCCTTGGGTCTTCGAGTGCTACTTTCTATAAGTAGAGTAAACTTC
TTATGAACTCCTCTGGGAATCAATTACCACAGTAATATTTTGAAAACGAG
GAGTTGCTAGTGACGTAATTTATGGAAAGGTTTTATAAAAGTAAATATTT
TCTGTGTTTGCATGATTTTAAGACAAATTCTACAGCTTGATTTTGTTTTG
GCTAGGTGTTATTTTCTTCTCTCCTAATACTGTATATGATTATATGTACG
GCCTTGCCCCCCATTCTTTGCTTACAATATATGCACGACCTAATCATCCA
AGTTAAAACTGCAATGCATGAGACAGTATCAAATTAAAATAGTCTAGAGT
AATCTTAGACCAATTCTAGTCAGGCGTGATGTGTGAACTTAAGGGATTTT
TCGAAATAAAGAATAAAGCAATTTCGGAACAAATTTTGAAAAAAAACTTT
TTTGAAATTTTTGAATAATTCCCTTTACTTTTTTAGGGAAAGATCACAAA
AAGTCTTCAAAGTTATCACATCATGCTCGTAAATTTGCTACCGAAGCCTC
GAAAAGTATTTATCAGCATGCGCTAGACGAAACTAAAAAAGACTTGGGAG
AGGCGATAGATAGTGCAGTTCAAGCATATACTGAACAGACTATTGGAGGT
AGGATACATACAAGGCTAACAAAGTGAACTTCGCCATATTTTAGAATACC
TGCGACTCACAACCCCAACCCCCCGGTCACGAGTCCCTGATGTAACTCAC
TGGAAATAAATGGAACCTTTTCCCAATTATTACAATAGATAACATCCTGT
TCAAAGAATGAATGTTCTATCCCATTTCATAATGTGCTTCTCATTGTAAA
TCCACTCTCCATACATTTAACGAGATGTACATACCCCTAGACTCGTCATT
TTTGAGCATTTTCACAAAGACAATTTTTACATAGAGATGACCTAGAATAG
ATTTGCATGTCTTACAACAACAACAACACATCTACTGTAGAAAAATGCCA
AAAATAACTTGTATCGCGCATGTATCGTCATTTAACCAAACGCATTATAA
ACAGGATTTAGCTGAACAATCTAAAAAAGCAAACACTTTCTTACACCATC
AACTCCATTATTCGACCAAACTTCTTCATTTTTCAAAGGTCATAAAGGCA
AAAAGAAAGAAGTCACGCCAGATACATCTTCAGAGGACCAAAGTAAACGA
CATGTCCAAAGTTATAATGATCCTTTAGCTGAGCAAAACCCTGATGAAGA
TGAAGCTCATCCAATGCCACAACCAGGCCATGTTCCACAAAACTTAAATG
GGATTATCCAAAAATATAAACCAAAGAAAGTTCAAGATGATAAGAAAAAC
AAAAACAAAAACAAACAAGACAATAAGCAGTCATATGCTGCAGGAACTTG
TAAGTTAATAAAATTCCTTTCCTTCAGCAGTGTAACCCTTTCATAAATTT
AAGTTTGGTTAAACCCTTCTTAAACTAATTTTTCAAGATTGTGCTTTTCT
CAGATGCTTTTTTATACTTTGAGATAGTTCTGTTAGTTTTAAACTTCGTA
GATTAAAGTGTTACGATTGATGAAATTGAGATTCAGTGTAGTTTTGACAT
CTTTCATTCCCTTTAGCCGATTCAGAAAATTCAGAGGAAGCACCTGATGA
AGCTGAGGCACCACCACCAGGAGGTGCCCCACCCGCAGGTGGTAACCCAC
CACCTCCAGGAGGTGCTCAGCCACCTCCTGCTGGAGGGCAGCCCACAACT
ACTCCAGCACCACCTCCTGCTGGTGATGATGATGACAGTGATGATAGCGA
TGATGATGCTCAGCCACCTGAACAAAAACCAGCCCCAGGAGGCGGCTCTC
CTCCTCCTCCAGGTGGTGCTCCTCCACCACCAGGAGGTGCCCCACCCCCT
CCAGGCGGTGCCCCTCCACCACCAGGTGGTGTCCCACCCCCTCCAGGTGG
TGCTCCCCCACCACCAGCAGGAAAGAAACCACCAACAGAAGCCAAATCTG
ACGGAGATGATCAAGAAGATTTGAAAGCCTTACTAGATGAAAGTATTGGT
AAGATGTCCAGCCATTCACAACGAATTCTAAAATAAAGACTGGAATGGAA
AAGGAAACGATCTAGAACGTTGAAGATCCGAAAAACCGGATTTTCTTCAA
GGTTGAAGAGATTCTTTCAGATGTCAAATAATGGCTGCTGCAGATATGGA
AATTTGGAAACCTCGTTAAAAAATCAGATTCCCAATTCCAGTCTTAATTT
TGGAGTTCGTTGATCAAATCAGTTAAATCTAAAAGTTATTCAAAAATAAA
ATCTCGATGCATCAAAAGCTAATAGATTCTAATTAGTCACTTTTGAGTAT
CACTTCAATATTCAAATAGGTCAAAAAACCTCCTTTTCTTTCTTTTCATC
TATTTAGGAAACTTAGTCAAAGCAAATCAAGCTGTAGAAACACTCTTATC
TGCCAGCAGTGGAGGTAAGAGCTTTTTACCGTTTTCTTCTCATGCCAATA
CTGCACCCACTAAACCAGGAATTTCCTCATCTTATCTTTGTAATTATTTT
TACTTTTAGGATCATCTAGTGGACCCTCTCCATCTGGAGGTGCTCCCCCA
CCCGGTGGTGCTCCTCCTCCTCCAGGCGGTGCCCCTCCACCCCCAGGTGG
CGTTCCTCCTCCAGGCGGTGCCCCTCCTCCAGGCGGTGCTCCTCCTCCAG
GCGGTGCCCCTCCTCCAGGTGGTGCCCCTCCACCCCCAGGTGGTGCCCCT
CCACCCCCAGGCGGTGCCCCTCCTCCAGGCGGTGCCCCTCCACCAGGTGG
TGCTCCTCCTCCAGGCGGTGCCCCTCCACCACCAGGTGGCGCCCCTCCCA
CTGAGGCTAAACCAGATGAGGCTGCTGGTGCTCCTCCCCCTCCTGGTGGT
GCCGGTGGCGCTCCTGGAGCAGCAGGTGGCAAAGGTGGAGACTGCACTGG
TTGCGAAAACCCATACTGCTGTGCCGAACCCTTTGGAGCTAGCTCAACTG
TCATTCATTTCCCAGCACCGCCATGTGCATGTGCTCCCCCACCACCACCT
TGTATGGCAATGCCATGTCCACCACCCCCTCCTCCATGCCCTNNNNNNNN
NNNNNNNNNNNNNACCATGTCCTGCACCTTGTCCAGTAGCATGTGCACCT
CCACCACCACCACCTTGTGCACCAGCCTGTATGCCCCCAGCTTGTGGACC
AACCTGCAGTCGCGATTGTTGTGAGTGGGATCAAGTCGTACCATCAGGTG
CATTGGCAGGGGCCCTCGCTAACTATGCTAAAGATCATGGCAAATAAATT
GGACGAAACAGACATTCTTTAATATTCCTATCCTAAACACAATGTACATT
AATATTTTCCTTTCACACTTGCATGTTTATATTTTATGACAAAGTTTTTT
TTCTGTTTATAATTTGACCGAAATGAATAATTTTAGAGACGAAACCAAAA
AAGGTTAATGGTGATAGTGGGTGCAGTGGTGTGTTTTCTACTTTCGTATA
ATTTGTCTATGATCGCTAACTGAATCACAATGACACACAAACACACACGC
TTAAACCAAGCAAATGTTTATTTTGTCATTTAGGTTTACCACTGCCTCCA
CTATCACCATTTCCATGCAGTACTTGTACTATAATATGTTTACCTGGCTG
TGATACAACTTGTTGTCATGGGGGTAACAAGAAAAATAAAACTTTCAATG
CTAAACTACATCATCGTAAAAAGACACGGCATCATGATAGAAAATCTCAT
AAAGGATATATTTCCGATGATGATAAAAGACATAACGATAATAACAATAT
GGTTGCCCCTACCATGCCTTCATTGCCTTTATCCAGATTTGTAGTGGCCC
CAACAATGCCTGCACCACCGACTGTATGTTGTGACAAAGACCATCCTGTA
ATCTTGAACTGTGATATCCCACCATGCCAACCGACCAATTGCATCTATTG
TTATAATCCTGGTTCACCGGTCGTCGGGAATAGCCTAATTATACCGAATG
CAGGCTGAAAGAGGATAATTTGTACATGGGATATTTACGTAGAGGAGCTG
ATGTATATTCATGTATAACTAACATTATAACTGATGCATGTCCATCATAT
CCAACCTTATGTCGTCATGGAGACGAACCGTTCGTTCTGAGCATGCGCAC
ATGAACGTGAATTGTGACTCTATGGATAACTATCTACGGATGAACTAACT
ACAACATAATTATCGTATATCATAGTTTTGTTATCGAATCTTTTGCTAAA
TGGCCAGTTAGTTCTATAGTTGGCGCATATATTACTTTTAAGCAAAGTAG
GGCCTAGTTGGTGACATAAAGGCTTTTCTTTAGAACACGTTGACTACACA
GATATCTGTAAAGCCCGAAGGGCTAGATAGGCAACTTTAAGCTTTCTCCA
CAGCAAAAAAAAGTGAAGCAAAAATTTGACTTTTTAAATTTCGTGCCGAT
GGATAGGATCTAGCATTTTAATTGTTTTTGGAGCGCGAGATCAAAAAAGT
AGGCGGCAAACGCTATTTCACATCTCTCAAACCGGTGGAATTGCATATTT
TACTCACGTGACTTTGGTAGGAAATCCTTCCAAATCTAGGCTTCACTTTT
CGATAAAAGCTGCGAATCTAGCCCTTCGGGCTTTACAGATCTGTGGTTGA
CTACTGATTTTTTATTGAAAAATTGACAAGAAATCTTTAAGAACAAGCTT
TGTACTTAAGGAAAGCCTTCTAGTTAAAGACTTTGCTCAGCGAAAATTTA
GTATAGTTTTGTTACTAGATAATGACACTTTTAGGACAATTTTCATATTT
ATAAAAGATACAAATATAAGGCATTTACACTTATGTCTTGAATGAAAATT
TAACATAATTTTTGGATAAAATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067013-exon-scaffold_462-1575043694:884701..884843 | TCONS_00067013-exon-scaffold_462-1575043694:884701..884843 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1575043694:883952..884025 | TCONS_00067013-exon-scaffold_462-1575043694:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1575043694:882245..882505 | TCONS_00067013-exon-scaffold_462-1575043694:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1575043694:881596..882027 | TCONS_00067013-exon-scaffold_462-1575043694:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1575043694:881180..881236 | TCONS_00067013-exon-scaffold_462-1575043694:881180..881236 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1575043694:881040..881084 | TCONS_00067013-exon-scaffold_462-1575043694:881040..881084 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1575043694:878768..880847 | TCONS_00067013-exon-scaffold_462-1575043694:878768..880847 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1510915933:884701..884843 | TCONS_00067013-exon-scaffold_462-1510915933:884701..884843 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1510915933:883952..884025 | TCONS_00067013-exon-scaffold_462-1510915933:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1510915933:882245..882505 | TCONS_00067013-exon-scaffold_462-1510915933:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1510915933:881596..882027 | TCONS_00067013-exon-scaffold_462-1510915933:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1510915933:881180..881236 | TCONS_00067013-exon-scaffold_462-1510915933:881180..881236 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1510915933:881040..881084 | TCONS_00067013-exon-scaffold_462-1510915933:881040..881084 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1510915933:878768..880847 | TCONS_00067013-exon-scaffold_462-1510915933:878768..880847 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1491911889:884701..884843 | TCONS_00067013-exon-scaffold_462-1491911889:884701..884843 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1491911889:883952..884025 | TCONS_00067013-exon-scaffold_462-1491911889:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1491911889:882245..882505 | TCONS_00067013-exon-scaffold_462-1491911889:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1491911889:881596..882027 | TCONS_00067013-exon-scaffold_462-1491911889:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1491911889:881180..881236 | TCONS_00067013-exon-scaffold_462-1491911889:881180..881236 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1491911889:881040..881084 | TCONS_00067013-exon-scaffold_462-1491911889:881040..881084 | Clytia hemisphaerica | exon |
TCONS_00067013-exon-scaffold_462-1491911889:878768..880847 | TCONS_00067013-exon-scaffold_462-1491911889:878768..880847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_462 | supercontig | scaffold_462:878768..884843 - |
Blast
The following BLAST results are available for this feature:
|