TCONS_00067006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067006
Unique NameTCONS_00067006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3002

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067006 ID=TCONS_00067006|Name=TCONS_00067006|organism=Clytia hemisphaerica|type=transcript|length=3002bp
caaaattttgacgaaaatcttttatttttgaatacaattttatcgttttg
ttttgatttttaagagAATTGACATTTAATCGGAGAAAAGGGAGCATATA
CATTTTCCAGCATGAAAGCTCTTCACGTGGGAGTGATGTTACTCCTACTT
GTGGCTTTGATCGATTGTCGGGCTATCAAAAAAGgtCATAAAGGCAAAAA
GAAAGAAGTCACGCCAGATACATCTTCAGAGGACCAAAGTAAACGACATG
TCCAAAGTTATAATGATCCTTTAGCTGAGCAAAACCCTGATGAAGATGAA
GCTCATCCAATGCCACAACCAGGCCATGTTCCACAAAACTTAAATGGGAT
TATCCAAAAATATAAACCAAAGAAAGTTCAAGAtgataagaaaaacaaaa
acaaaaacaaacaagacAATAAGCAGTCATATGCTGCAGGAACTTCCGAT
TCAGAAAATTCAGAGGAAGCACCTGATGAAGCTGAGGCACCACCACCAGG
AGGTGCCCCACCCGCAGGTGGTAACCCACCACCTCCAGGAGGTGCTCAGC
CACCTCCTGCTGGAGGGCAGCCCACAACTACTCCAGCACCACCTCCTGCT
GGTGATGATGATGACAGTGATGATAGCGATGATGATGCTCAGCCACCTGA
ACAAAAACCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCAGGTGGTGCTC
CTCCACCACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGCCCCTCCACCA
CCAGGTGGTGTCCCACCCCCTCCAGGTGGTGCTCCCCCACCACCAGCAGG
AAAGAAACCACCAACAGAAGCCAAATCTGACGGAGATGATCAAGAAGATT
TGAAAGCCTTACTAGATGAAAGTATTGgaTCATCTAGTGGACCCTCTCCA
TCTGGAGGTGCTCCCCCACCCGGTGGTGCTCCTCCTCCAGGCGGTGCCCC
TCCACCACCAGGTGGCGCCCCTCCCACTGAGGCTAAACCAGATGAGGCTG
CTGGTGCTCCTCCCCCTCCTGGTGGTGCCGGTGGCGCTCCTGGAGCAGCA
GGTGGCAAAGGTGGAGACTGCACTGGTTGCGAAAACCCATACTGCTGTGC
CGAACCCTTTGGAGCTAGCTCAACTGTCATTCATTTCCCAGCACCGCCAT
GTGCATGTGCTCCCCCACCACCACCTTGTATGGCAATGCCATGTCCACCA
CCCCCTCCTCCATGCCCTNNNNNNNNNNNNNNNNNNNNNACCATGTCCTG
CACCTTGTCCAGTAGCATGTGCacctccaccaccaccacctTGTGCACCA
GCCTGTATGCCCCCAGCTTGTGGACCAACCTGCAGTCGCGATTGTTGTGA
GTGGGATCAAGTCGTACCATCAGGTGCATTGGCAGGGGCCCTCGCTAACT
ATGCTAAAGATCATGGCAAATAAATTGGACGAAACAGACATTCTTTAATA
TTCCTATCCTAAACACAATGTACATTAATATTTTCCTTTCACACTTGCAT
GTTTATATTTTatgacaaagttttttttctgtttataaTTTGACCGAAAT
GAATAATTTTAGAGACGAAACCAAAAAAGGTTAATGGTGATAGTGGGTGC
AGTGGTGTGTTTTCTACTTTCGTATAATTTGTCTATGATCGCTAACTGAA
TCACAATGACACACAAACACACACGCTTAAACCAAGCAAATGTTTATTTT
GTCATTTAGGTTTACCACTGCCTCCACTATCACCATTTCCATGCAGTACT
TGTACTATAATATGTTTACCTGGCTGTGATACAACTTGTTGTCATGGGGg
taacaagaaaaataaaactttcaatGCTAAACTACATCATCGTAAAAAGA
CACGGCATCATGATAGAAAATCTCATAAAGGATATATTTCCGATGATGAT
AAAAGACATAACGATAATAACAATATGGTTGCCCCTACCATGCCTTCATT
GCCTTTATCCAGATTTGTAGTGGCCCCAACAATGCCTGCACCACCGACTG
TATGTTGTGACAAAGACCATCCTGTAATCTTGAACTGTGATATCCCACCA
TGCCAACCGACCAATTGCATCTATTGTTATAATCCTGGTTCACCGGTCGT
CGGGAATAGCCTAATTATACCGAATGCAGGCTGAAAGAGGATAATTTGTA
CATGGGATATTTACGTAGAGGAGCTGATGTATATTCATGTATAACTAACA
TTATAACTGATGCATGTCCATCATATCCAACCTTATGTCGTCATGGAGAC
GAACCGTTCGTTCTGAGCATGCGCACATGAACGTGAATTGTGACTCTATG
GATAACTATCTACGGATGAACTAACTACAACATAATTATCGTATATCATA
GTTTTGTTATCGAATCTTTTGCTAAATGGCCAGTTAGTTCTATAGTTGGC
GCATATATTACTTTTAAGCAAAGTAGGGCCTAGTTGGTGACATAAAGGCT
TTTCTTTAGAACACGTTGACtacacagatatctgtaaagcccgaagggct
agataggcaactttaagctttctccacagcaaaaaaaagtgaagcaaaaa
tttgactttttaaatttcgtgccgatggataggatctagcattttaattg
tttttggagcgcgagatcaaaaaagtaggcggcaaacgctatttcacatc
tctcaaaccggtggaATTGCATATTTTactcacgtgactttggtaggaaa
tccttccaaatctaggcttcacttttcgataaaagctgcgaatctagccc
ttcgggctttacagatctgtggttgACTActgattttttattgaaaaatt
gacaaGAAATCTTTAAGAACAAGCTTTGTACTTAAGGAAAGCCTTCTAGT
TAAAGACTTTGCTCAGCGAAAATTTAGTATAGTTTTGTTACTAGATAATG
ACACTTTTAGGACAATTTTCATATTTATAAAAGATACAAATATAAGGCAT
TTACACTTATGtcttgaatgaaaatttaacataatttttggataaaatat
tc
Run BLAST on NCBI

transcript from alignment at scaffold_462:878768..884810-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067006 ID=TCONS_00067006|Name=TCONS_00067006|organism=Clytia hemisphaerica|type=transcript|length=6043bp|location=Sequence derived from alignment at scaffold_462:878768..884810- (Clytia hemisphaerica)
CAAAATTTTGACGAAAATCTTTTATTTTTGAATACAATTTTATCGTTTTG
TTTTGATTTTTAAGAGAATTGACATTTAATCGGAGAAAAGGGAGCATATA
CATTTTCCAGGTGAGTAAACCATTTACTACCAATTTGATAGATTTTGTTC
TTTTGATAAATTGGACTCGTATTTTAATCATTATTTGGCTTTGCTTGATT
GAAAAAGTGATTTTTTCAGGAGCATCTTAAGAAATATTATTGCAATCGTT
AAAAGATAATGATATGTTTTGTTTGTTTAATGATATTTTGAATTGGATAT
TTGCTATTGAGCACCTGGCTGACTGCTTTCTCGCTATTCAAATTGTTACA
AATTAAAAAAAGAATCATTAGAAACCCCATAACTCGAACACGCAACCTAA
ATATTTTATTTGAGTGATACACGGTGAATCTACCATTGAGTTTAAAGCCC
CGAAGAAATTAAAATTGAAACTTTTGGATGGGAAATGAAGTCACTTAGTG
TCTATCTGAAACGTGTAACCTGCGTGGTTTTCACATAAACGCCAGAGTGA
AAGAAATATTCATCGCTAGATTTCGAAAAATACGCCACGTGAAAACAAAG
AAAGCACTAGATTCAATCCGTTATTCTGAATACGCAAATCTTTAATGCTT
TACTTTTTCTTGCTTGAGAAGGGCTGAAGATTTTTCTTAGAGCCCTTTGA
GCCTTAAACTCAATGTACCCATTGTACTCTGTCACATATTCTTGTCGCTA
TTAAATTTTAATTGTCTTTCTTTCTTTTCATTCAGCATGAAAGCTCTTCA
CGTGGGAGTGATGTTACTCCTACTTGTGGCTTTGATCGATTGTCGGGCTA
TCAAAAAAGGTATACTTTTATTCAATGTTTTTTACCTAGCTAAGGAATCT
TCCTGAATTTTCAATGCAATGAAAGTAGAAAGAGCATCCCTTCTCGGTTA
CCTTTTCATGTTGTAATGATCCTTCTTTGTTATGTTTTTCGCTAAATTCG
TCTTCACTGTCGATGCATAAAATTTCATTTACCTTATGGGGAGGAAAATA
GTCATGATTTATCTATTTATTTCGGTCTCGATTATTTGGCCCCGATTCTT
TGGCGCCTTTTCATAAATTATCTTGAGTGCAACGACTGCCTCGTTTTGAA
ACCATTGTCAAGGTGACTAAATTCCTTGGGTCTTCGAGTGCTACTTTCTA
TAAGTAGAGTAAACTTCTTATGAACTCCTCTGGGAATCAATTACCACAGT
AATATTTTGAAAACGAGGAGTTGCTAGTGACGTAATTTATGGAAAGGTTT
TATAAAAGTAAATATTTTCTGTGTTTGCATGATTTTAAGACAAATTCTAC
AGCTTGATTTTGTTTTGGCTAGGTGTTATTTTCTTCTCTCCTAATACTGT
ATATGATTATATGTACGGCCTTGCCCCCCATTCTTTGCTTACAATATATG
CACGACCTAATCATCCAAGTTAAAACTGCAATGCATGAGACAGTATCAAA
TTAAAATAGTCTAGAGTAATCTTAGACCAATTCTAGTCAGGCGTGATGTG
TGAACTTAAGGGATTTTTCGAAATAAAGAATAAAGCAATTTCGGAACAAA
TTTTGAAAAAAAACTTTTTTGAAATTTTTGAATAATTCCCTTTACTTTTT
TAGGGAAAGATCACAAAAAGTCTTCAAAGTTATCACATCATGCTCGTAAA
TTTGCTACCGAAGCCTCGAAAAGTATTTATCAGCATGCGCTAGACGAAAC
TAAAAAAGACTTGGGAGAGGCGATAGATAGTGCAGTTCAAGCATATACTG
AACAGACTATTGGAGGTAGGATACATACAAGGCTAACAAAGTGAACTTCG
CCATATTTTAGAATACCTGCGACTCACAACCCCAACCCCCCGGTCACGAG
TCCCTGATGTAACTCACTGGAAATAAATGGAACCTTTTCCCAATTATTAC
AATAGATAACATCCTGTTCAAAGAATGAATGTTCTATCCCATTTCATAAT
GTGCTTCTCATTGTAAATCCACTCTCCATACATTTAACGAGATGTACATA
CCCCTAGACTCGTCATTTTTGAGCATTTTCACAAAGACAATTTTTACATA
GAGATGACCTAGAATAGATTTGCATGTCTTACAACAACAACAACACATCT
ACTGTAGAAAAATGCCAAAAATAACTTGTATCGCGCATGTATCGTCATTT
AACCAAACGCATTATAAACAGGATTTAGCTGAACAATCTAAAAAAGCAAA
CACTTTCTTACACCATCAACTCCATTATTCGACCAAACTTCTTCATTTTT
CAAAGGTCATAAAGGCAAAAAGAAAGAAGTCACGCCAGATACATCTTCAG
AGGACCAAAGTAAACGACATGTCCAAAGTTATAATGATCCTTTAGCTGAG
CAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACAACCAGGCCATGT
TCCACAAAACTTAAATGGGATTATCCAAAAATATAAACCAAAGAAAGTTC
AAGATGATAAGAAAAACAAAAACAAAAACAAACAAGACAATAAGCAGTCA
TATGCTGCAGGAACTTGTAAGTTAATAAAATTCCTTTCCTTCAGCAGTGT
AACCCTTTCATAAATTTAAGTTTGGTTAAACCCTTCTTAAACTAATTTTT
CAAGATTGTGCTTTTCTCAGATGCTTTTTTATACTTTGAGATAGTTCTGT
TAGTTTTAAACTTCGTAGATTAAAGTGTTACGATTGATGAAATTGAGATT
CAGTGTAGTTTTGACATCTTTCATTCCCTTTAGCCGATTCAGAAAATTCA
GAGGAAGCACCTGATGAAGCTGAGGCACCACCACCAGGAGGTGCCCCACC
CGCAGGTGGTAACCCACCACCTCCAGGAGGTGCTCAGCCACCTCCTGCTG
GAGGGCAGCCCACAACTACTCCAGCACCACCTCCTGCTGGTGATGATGAT
GACAGTGATGATAGCGATGATGATGCTCAGCCACCTGAACAAAAACCAGC
CCCAGGAGGCGGCTCTCCTCCTCCTCCAGGTGGTGCTCCTCCACCACCAG
GAGGTGCCCCACCCCCTCCAGGCGGTGCCCCTCCACCACCAGGTGGTGTC
CCACCCCCTCCAGGTGGTGCTCCCCCACCACCAGCAGGAAAGAAACCACC
AACAGAAGCCAAATCTGACGGAGATGATCAAGAAGATTTGAAAGCCTTAC
TAGATGAAAGTATTGGTAAGATGTCCAGCCATTCACAACGAATTCTAAAA
TAAAGACTGGAATGGAAAAGGAAACGATCTAGAACGTTGAAGATCCGAAA
AACCGGATTTTCTTCAAGGTTGAAGAGATTCTTTCAGATGTCAAATAATG
GCTGCTGCAGATATGGAAATTTGGAAACCTCGTTAAAAAATCAGATTCCC
AATTCCAGTCTTAATTTTGGAGTTCGTTGATCAAATCAGTTAAATCTAAA
AGTTATTCAAAAATAAAATCTCGATGCATCAAAAGCTAATAGATTCTAAT
TAGTCACTTTTGAGTATCACTTCAATATTCAAATAGGTCAAAAAACCTCC
TTTTCTTTCTTTTCATCTATTTAGGAAACTTAGTCAAAGCAAATCAAGCT
GTAGAAACACTCTTATCTGCCAGCAGTGGAGGTAAGAGCTTTTTACCGTT
TTCTTCTCATGCCAATACTGCACCCACTAAACCAGGAATTTCCTCATCTT
ATCTTTGTAATTATTTTTACTTTTAGGATCATCTAGTGGACCCTCTCCAT
CTGGAGGTGCTCCCCCACCCGGTGGTGCTCCTCCTCCTCCAGGCGGTGCC
CCTCCACCCCCAGGTGGCGTTCCTCCTCCAGGCGGTGCCCCTCCTCCAGG
CGGTGCTCCTCCTCCAGGCGGTGCCCCTCCTCCAGGTGGTGCCCCTCCAC
CCCCAGGTGGTGCCCCTCCACCCCCAGGCGGTGCCCCTCCTCCAGGCGGT
GCCCCTCCACCAGGTGGTGCTCCTCCTCCAGGCGGTGCCCCTCCACCACC
AGGTGGCGCCCCTCCCACTGAGGCTAAACCAGATGAGGCTGCTGGTGCTC
CTCCCCCTCCTGGTGGTGCCGGTGGCGCTCCTGGAGCAGCAGGTGGCAAA
GGTGGAGACTGCACTGGTTGCGAAAACCCATACTGCTGTGCCGAACCCTT
TGGAGCTAGCTCAACTGTCATTCATTTCCCAGCACCGCCATGTGCATGTG
CTCCCCCACCACCACCTTGTATGGCAATGCCATGTCCACCACCCCCTCCT
CCATGCCCTNNNNNNNNNNNNNNNNNNNNNACCATGTCCTGCACCTTGTC
CAGTAGCATGTGCACCTCCACCACCACCACCTTGTGCACCAGCCTGTATG
CCCCCAGCTTGTGGACCAACCTGCAGTCGCGATTGTTGTGAGTGGGATCA
AGTCGTACCATCAGGTGCATTGGCAGGGGCCCTCGCTAACTATGCTAAAG
ATCATGGCAAATAAATTGGACGAAACAGACATTCTTTAATATTCCTATCC
TAAACACAATGTACATTAATATTTTCCTTTCACACTTGCATGTTTATATT
TTATGACAAAGTTTTTTTTCTGTTTATAATTTGACCGAAATGAATAATTT
TAGAGACGAAACCAAAAAAGGTTAATGGTGATAGTGGGTGCAGTGGTGTG
TTTTCTACTTTCGTATAATTTGTCTATGATCGCTAACTGAATCACAATGA
CACACAAACACACACGCTTAAACCAAGCAAATGTTTATTTTGTCATTTAG
GTTTACCACTGCCTCCACTATCACCATTTCCATGCAGTACTTGTACTATA
ATATGTTTACCTGGCTGTGATACAACTTGTTGTCATGGGGGTAACAAGAA
AAATAAAACTTTCAATGCTAAACTACATCATCGTAAAAAGACACGGCATC
ATGATAGAAAATCTCATAAAGGATATATTTCCGATGATGATAAAAGACAT
AACGATAATAACAATATGGTTGCCCCTACCATGCCTTCATTGCCTTTATC
CAGATTTGTAGTGGCCCCAACAATGCCTGCACCACCGACTGTATGTTGTG
ACAAAGACCATCCTGTAATCTTGAACTGTGATATCCCACCATGCCAACCG
ACCAATTGCATCTATTGTTATAATCCTGGTTCACCGGTCGTCGGGAATAG
CCTAATTATACCGAATGCAGGCTGAAAGAGGATAATTTGTACATGGGATA
TTTACGTAGAGGAGCTGATGTATATTCATGTATAACTAACATTATAACTG
ATGCATGTCCATCATATCCAACCTTATGTCGTCATGGAGACGAACCGTTC
GTTCTGAGCATGCGCACATGAACGTGAATTGTGACTCTATGGATAACTAT
CTACGGATGAACTAACTACAACATAATTATCGTATATCATAGTTTTGTTA
TCGAATCTTTTGCTAAATGGCCAGTTAGTTCTATAGTTGGCGCATATATT
ACTTTTAAGCAAAGTAGGGCCTAGTTGGTGACATAAAGGCTTTTCTTTAG
AACACGTTGACTACACAGATATCTGTAAAGCCCGAAGGGCTAGATAGGCA
ACTTTAAGCTTTCTCCACAGCAAAAAAAAGTGAAGCAAAAATTTGACTTT
TTAAATTTCGTGCCGATGGATAGGATCTAGCATTTTAATTGTTTTTGGAG
CGCGAGATCAAAAAAGTAGGCGGCAAACGCTATTTCACATCTCTCAAACC
GGTGGAATTGCATATTTTACTCACGTGACTTTGGTAGGAAATCCTTCCAA
ATCTAGGCTTCACTTTTCGATAAAAGCTGCGAATCTAGCCCTTCGGGCTT
TACAGATCTGTGGTTGACTACTGATTTTTTATTGAAAAATTGACAAGAAA
TCTTTAAGAACAAGCTTTGTACTTAAGGAAAGCCTTCTAGTTAAAGACTT
TGCTCAGCGAAAATTTAGTATAGTTTTGTTACTAGATAATGACACTTTTA
GGACAATTTTCATATTTATAAAAGATACAAATATAAGGCATTTACACTTA
TGTCTTGAATGAAAATTTAACATAATTTTTGGATAAAATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041859XLOC_041859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067006-exon-scaffold_462-1575043694:884701..884810TCONS_00067006-exon-scaffold_462-1575043694:884701..884810Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1575043694:883952..884025TCONS_00067006-exon-scaffold_462-1575043694:883952..884025Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1575043694:882245..882505TCONS_00067006-exon-scaffold_462-1575043694:882245..882505Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1575043694:881596..882027TCONS_00067006-exon-scaffold_462-1575043694:881596..882027Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1575043694:881040..881084TCONS_00067006-exon-scaffold_462-1575043694:881040..881084Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1575043694:878768..880847TCONS_00067006-exon-scaffold_462-1575043694:878768..880847Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1510915933:884701..884810TCONS_00067006-exon-scaffold_462-1510915933:884701..884810Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1510915933:883952..884025TCONS_00067006-exon-scaffold_462-1510915933:883952..884025Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1510915933:882245..882505TCONS_00067006-exon-scaffold_462-1510915933:882245..882505Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1510915933:881596..882027TCONS_00067006-exon-scaffold_462-1510915933:881596..882027Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1510915933:881040..881084TCONS_00067006-exon-scaffold_462-1510915933:881040..881084Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1510915933:878768..880847TCONS_00067006-exon-scaffold_462-1510915933:878768..880847Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1491911889:884701..884810TCONS_00067006-exon-scaffold_462-1491911889:884701..884810Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1491911889:883952..884025TCONS_00067006-exon-scaffold_462-1491911889:883952..884025Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1491911889:882245..882505TCONS_00067006-exon-scaffold_462-1491911889:882245..882505Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1491911889:881596..882027TCONS_00067006-exon-scaffold_462-1491911889:881596..882027Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1491911889:881040..881084TCONS_00067006-exon-scaffold_462-1491911889:881040..881084Clytia hemisphaericaexon
TCONS_00067006-exon-scaffold_462-1491911889:878768..880847TCONS_00067006-exon-scaffold_462-1491911889:878768..880847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:878768..884810 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.22696e-06	0	0	0	1.90747	0.706552	9.22664	6.70484	0	0.725216	0.485926	1.59121	0.533686	0.790245	0.640194	2.9011	2.43132	0.306762	0	0	0	0	0	0	3.72259	3.21456	0	1.01985e-05	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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