TCONS_00067016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067016
Unique NameTCONS_00067016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1185

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067016 ID=TCONS_00067016|Name=TCONS_00067016|organism=Clytia hemisphaerica|type=transcript|length=1185bp
catttgctgtatcaaaattttgacgaaaatcttttatttttgaatacaat
tttatcgttttgttttgatttttaagagAATTGACATTTAATCGGAGAAA
AGGGAGCATATACATTTTCCAGCATGAAAGCTCTTCACGTGGGAGTGATG
TTACTCCTACTTGTGGCTTTGATCGATTGTCGGGCTATCAAAAAAGGGAA
AGATCACAAAAAGTCTTCAAAGTTATCACATCATGCTCGTAAATTTGCTA
CCGAAGCCTCGAAAAGTATTTATCAGCATGCGCTAGACGAAACTAAAAAA
GACTTGGGAGAGGCGATAGATAGTGCAGTTCAAGCATATACTGAACAGAC
TATTGGAGgtCATAAAGGCAAAAAGAAAGAAGTCACGCCAGATACATCTT
CAGAGGACCAAAGTAAACGACATGTCCAAAGTTATAATGATCCTTTAGCT
GAGCAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACAACCAGGCCA
TGTTCCACAAAACTTAAATGGGATTATCCAAAAATATAAACCAAAGAAAG
TTCAAGAtgataagaaaaacaaaaacaaaaacaaacaagacAATAAGCAG
TCATATGCTGCAGGAACTTCCGATTCAGAAAATTCAGAGGAAGCACCTGA
TGAAGCTGAGGCACCACCACCAGGAGGTGCCCCACCCGCAGGTGGTAACC
CACCACCTCCAGGAGGTGCTCAGCCACCTCCTGCTGGAGGGCAGCCCACA
ACTACTCCAGCACCACCTCCTGCTGGTGATGATGATGACAGTGATGATAG
CGATGATGATGCTCAGCCACCTGAACAAAAACCAGCCCCAGGAGGCGGCT
CTCCTCCTCCTCCAGGTGGTGCTCCTCCACCACCAGGAGGTGCCCCACCC
CCTCCAGGCGGTGCCCCTCCACCACCAGGTGGTGTCCCACCCCCTCCAGG
TGGTGCTCCCCCACCACCAGCAGGAAAGAAACCACCAACAGAAGCCAAAT
CTGACGGAGATGATCAAGAAGATTTGAAAGCCTTACTAGATGAAAGTATT
GGAAACTTAGTCAAAGCAAATCAAGCTGTAGAAACACTCTTATCTGCCAG
CAGTGGAGgaTCATCTAGTGGACCCTCTCCATCTGGAGGTGCTCCCCCAC
CCGGCGGTGCTCCTCCTCCAGGCGGTGCCCCTCCT
Run BLAST on NCBI

transcript from alignment at scaffold_462:880930..884822-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067016 ID=TCONS_00067016|Name=TCONS_00067016|organism=Clytia hemisphaerica|type=transcript|length=3893bp|location=Sequence derived from alignment at scaffold_462:880930..884822- (Clytia hemisphaerica)
CATTTGCTGTATCAAAATTTTGACGAAAATCTTTTATTTTTGAATACAAT
TTTATCGTTTTGTTTTGATTTTTAAGAGAATTGACATTTAATCGGAGAAA
AGGGAGCATATACATTTTCCAGGTGAGTAAACCATTTACTACCAATTTGA
TAGATTTTGTTCTTTTGATAAATTGGACTCGTATTTTAATCATTATTTGG
CTTTGCTTGATTGAAAAAGTGATTTTTTCAGGAGCATCTTAAGAAATATT
ATTGCAATCGTTAAAAGATAATGATATGTTTTGTTTGTTTAATGATATTT
TGAATTGGATATTTGCTATTGAGCACCTGGCTGACTGCTTTCTCGCTATT
CAAATTGTTACAAATTAAAAAAAGAATCATTAGAAACCCCATAACTCGAA
CACGCAACCTAAATATTTTATTTGAGTGATACACGGTGAATCTACCATTG
AGTTTAAAGCCCCGAAGAAATTAAAATTGAAACTTTTGGATGGGAAATGA
AGTCACTTAGTGTCTATCTGAAACGTGTAACCTGCGTGGTTTTCACATAA
ACGCCAGAGTGAAAGAAATATTCATCGCTAGATTTCGAAAAATACGCCAC
GTGAAAACAAAGAAAGCACTAGATTCAATCCGTTATTCTGAATACGCAAA
TCTTTAATGCTTTACTTTTTCTTGCTTGAGAAGGGCTGAAGATTTTTCTT
AGAGCCCTTTGAGCCTTAAACTCAATGTACCCATTGTACTCTGTCACATA
TTCTTGTCGCTATTAAATTTTAATTGTCTTTCTTTCTTTTCATTCAGCAT
GAAAGCTCTTCACGTGGGAGTGATGTTACTCCTACTTGTGGCTTTGATCG
ATTGTCGGGCTATCAAAAAAGGTATACTTTTATTCAATGTTTTTTACCTA
GCTAAGGAATCTTCCTGAATTTTCAATGCAATGAAAGTAGAAAGAGCATC
CCTTCTCGGTTACCTTTTCATGTTGTAATGATCCTTCTTTGTTATGTTTT
TCGCTAAATTCGTCTTCACTGTCGATGCATAAAATTTCATTTACCTTATG
GGGAGGAAAATAGTCATGATTTATCTATTTATTTCGGTCTCGATTATTTG
GCCCCGATTCTTTGGCGCCTTTTCATAAATTATCTTGAGTGCAACGACTG
CCTCGTTTTGAAACCATTGTCAAGGTGACTAAATTCCTTGGGTCTTCGAG
TGCTACTTTCTATAAGTAGAGTAAACTTCTTATGAACTCCTCTGGGAATC
AATTACCACAGTAATATTTTGAAAACGAGGAGTTGCTAGTGACGTAATTT
ATGGAAAGGTTTTATAAAAGTAAATATTTTCTGTGTTTGCATGATTTTAA
GACAAATTCTACAGCTTGATTTTGTTTTGGCTAGGTGTTATTTTCTTCTC
TCCTAATACTGTATATGATTATATGTACGGCCTTGCCCCCCATTCTTTGC
TTACAATATATGCACGACCTAATCATCCAAGTTAAAACTGCAATGCATGA
GACAGTATCAAATTAAAATAGTCTAGAGTAATCTTAGACCAATTCTAGTC
AGGCGTGATGTGTGAACTTAAGGGATTTTTCGAAATAAAGAATAAAGCAA
TTTCGGAACAAATTTTGAAAAAAAACTTTTTTGAAATTTTTGAATAATTC
CCTTTACTTTTTTAGGGAAAGATCACAAAAAGTCTTCAAAGTTATCACAT
CATGCTCGTAAATTTGCTACCGAAGCCTCGAAAAGTATTTATCAGCATGC
GCTAGACGAAACTAAAAAAGACTTGGGAGAGGCGATAGATAGTGCAGTTC
AAGCATATACTGAACAGACTATTGGAGGTAGGATACATACAAGGCTAACA
AAGTGAACTTCGCCATATTTTAGAATACCTGCGACTCACAACCCCAACCC
CCCGGTCACGAGTCCCTGATGTAACTCACTGGAAATAAATGGAACCTTTT
CCCAATTATTACAATAGATAACATCCTGTTCAAAGAATGAATGTTCTATC
CCATTTCATAATGTGCTTCTCATTGTAAATCCACTCTCCATACATTTAAC
GAGATGTACATACCCCTAGACTCGTCATTTTTGAGCATTTTCACAAAGAC
AATTTTTACATAGAGATGACCTAGAATAGATTTGCATGTCTTACAACAAC
AACAACACATCTACTGTAGAAAAATGCCAAAAATAACTTGTATCGCGCAT
GTATCGTCATTTAACCAAACGCATTATAAACAGGATTTAGCTGAACAATC
TAAAAAAGCAAACACTTTCTTACACCATCAACTCCATTATTCGACCAAAC
TTCTTCATTTTTCAAAGGTCATAAAGGCAAAAAGAAAGAAGTCACGCCAG
ATACATCTTCAGAGGACCAAAGTAAACGACATGTCCAAAGTTATAATGAT
CCTTTAGCTGAGCAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACA
ACCAGGCCATGTTCCACAAAACTTAAATGGGATTATCCAAAAATATAAAC
CAAAGAAAGTTCAAGATGATAAGAAAAACAAAAACAAAAACAAACAAGAC
AATAAGCAGTCATATGCTGCAGGAACTTGTAAGTTAATAAAATTCCTTTC
CTTCAGCAGTGTAACCCTTTCATAAATTTAAGTTTGGTTAAACCCTTCTT
AAACTAATTTTTCAAGATTGTGCTTTTCTCAGATGCTTTTTTATACTTTG
AGATAGTTCTGTTAGTTTTAAACTTCGTAGATTAAAGTGTTACGATTGAT
GAAATTGAGATTCAGTGTAGTTTTGACATCTTTCATTCCCTTTAGCCGAT
TCAGAAAATTCAGAGGAAGCACCTGATGAAGCTGAGGCACCACCACCAGG
AGGTGCCCCACCCGCAGGTGGTAACCCACCACCTCCAGGAGGTGCTCAGC
CACCTCCTGCTGGAGGGCAGCCCACAACTACTCCAGCACCACCTCCTGCT
GGTGATGATGATGACAGTGATGATAGCGATGATGATGCTCAGCCACCTGA
ACAAAAACCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCAGGTGGTGCTC
CTCCACCACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGCCCCTCCACCA
CCAGGTGGTGTCCCACCCCCTCCAGGTGGTGCTCCCCCACCACCAGCAGG
AAAGAAACCACCAACAGAAGCCAAATCTGACGGAGATGATCAAGAAGATT
TGAAAGCCTTACTAGATGAAAGTATTGGTAAGATGTCCAGCCATTCACAA
CGAATTCTAAAATAAAGACTGGAATGGAAAAGGAAACGATCTAGAACGTT
GAAGATCCGAAAAACCGGATTTTCTTCAAGGTTGAAGAGATTCTTTCAGA
TGTCAAATAATGGCTGCTGCAGATATGGAAATTTGGAAACCTCGTTAAAA
AATCAGATTCCCAATTCCAGTCTTAATTTTGGAGTTCGTTGATCAAATCA
GTTAAATCTAAAAGTTATTCAAAAATAAAATCTCGATGCATCAAAAGCTA
ATAGATTCTAATTAGTCACTTTTGAGTATCACTTCAATATTCAAATAGGT
CAAAAAACCTCCTTTTCTTTCTTTTCATCTATTTAGGAAACTTAGTCAAA
GCAAATCAAGCTGTAGAAACACTCTTATCTGCCAGCAGTGGAGGTAAGAG
CTTTTTACCGTTTTCTTCTCATGCCAATACTGCACCCACTAAACCAGGAA
TTTCCTCATCTTATCTTTGTAATTATTTTTACTTTTAGGATCATCTAGTG
GACCCTCTCCATCTGGAGGTGCTCCCCCACCCGGTGGTGCTCCTCCTCCT
CCAGGCGGTGCCCCTCCACCCCCAGGTGGCGTTCCTCCTCCAGGCGGTGC
CCCTCCTCCAGGCGGTGCTCCTCCTCCAGGCGGTGCCCCTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041859XLOC_041859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067016-exon-scaffold_462-1575043694:884701..884822TCONS_00067016-exon-scaffold_462-1575043694:884701..884822Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1575043694:883952..884025TCONS_00067016-exon-scaffold_462-1575043694:883952..884025Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1575043694:882996..883157TCONS_00067016-exon-scaffold_462-1575043694:882996..883157Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1575043694:882245..882505TCONS_00067016-exon-scaffold_462-1575043694:882245..882505Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1575043694:881596..882027TCONS_00067016-exon-scaffold_462-1575043694:881596..882027Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1575043694:881180..881236TCONS_00067016-exon-scaffold_462-1575043694:881180..881236Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1575043694:881040..881084TCONS_00067016-exon-scaffold_462-1575043694:881040..881084Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1575043694:880930..880961TCONS_00067016-exon-scaffold_462-1575043694:880930..880961Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1510915933:884701..884822TCONS_00067016-exon-scaffold_462-1510915933:884701..884822Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1510915933:883952..884025TCONS_00067016-exon-scaffold_462-1510915933:883952..884025Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1510915933:882996..883157TCONS_00067016-exon-scaffold_462-1510915933:882996..883157Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1510915933:882245..882505TCONS_00067016-exon-scaffold_462-1510915933:882245..882505Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1510915933:881596..882027TCONS_00067016-exon-scaffold_462-1510915933:881596..882027Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1510915933:881180..881236TCONS_00067016-exon-scaffold_462-1510915933:881180..881236Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1510915933:881040..881084TCONS_00067016-exon-scaffold_462-1510915933:881040..881084Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1510915933:880930..880961TCONS_00067016-exon-scaffold_462-1510915933:880930..880961Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1491911889:884701..884822TCONS_00067016-exon-scaffold_462-1491911889:884701..884822Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1491911889:883952..884025TCONS_00067016-exon-scaffold_462-1491911889:883952..884025Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1491911889:882996..883157TCONS_00067016-exon-scaffold_462-1491911889:882996..883157Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1491911889:882245..882505TCONS_00067016-exon-scaffold_462-1491911889:882245..882505Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1491911889:881596..882027TCONS_00067016-exon-scaffold_462-1491911889:881596..882027Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1491911889:881180..881236TCONS_00067016-exon-scaffold_462-1491911889:881180..881236Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1491911889:881040..881084TCONS_00067016-exon-scaffold_462-1491911889:881040..881084Clytia hemisphaericaexon
TCONS_00067016-exon-scaffold_462-1491911889:880930..880961TCONS_00067016-exon-scaffold_462-1491911889:880930..880961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:880930..884822 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.58597	2.50288	20.1539	16.0748	0.164598	6.47988e-06	5.8544e-10	3.58329e-08	0	0	0.889729	6.94738	1.00431e-07	0.000133969	0	0	1.12592e-06	0.843823	0.0538218	0.0542081	0	0	0	9.95019e-08	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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