TCONS_00067017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067017
Unique NameTCONS_00067017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1075

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067017 ID=TCONS_00067017|Name=TCONS_00067017|organism=Clytia hemisphaerica|type=transcript|length=1075bp
ctttgaaaatcatttgctgtatcaaaattttgacgaaaatcttttatttt
tgaatacaattttatcgttttgttttgatttttaagagAATTGACATTTA
ATCGGAGAAAAGGGAGCATATACATTTTCCAGCATGAAAGCTCTTCACGT
GGGAGTGATGTTACTCCTACTTGTGGCTTTGATCGATTGTCGGGCTATCA
AAAAAGgtCATAAAGGCAAAAAGAAAGAAGTCACGCCAGATACATCTTCA
GAGGACCAAAGTAAACGACATGTCCAAAGTTATAATGATCCTTTAGCTGA
GCAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACAACCAGGCCATG
TTCCACAAAACTTAAATGGGATTATCCAAAAATATAAACCAAAGAAAGTT
CAAGAtgataagaaaaacaaaaacaaaaacaaacaagacAATAAGCAGTC
ATATGCTGCAGGAACTTCCGATTCAGAAAATTCAGAGGAAGCACCTGATG
AAGCTGAGGCACCACCACCAGGAGGTGCCCCACCCGCAGGTGGTAACCCA
CCACCTCCAGGAGGTGCTCAGCCACCTCCTGCTGGAGGGCAGCCCACAAC
TACTCCAGCACCACCTCCTGCTGGTGATGATGATGACAGTGATGATAGCG
ATGATGATGCTCAGCCACCTGAACAAAAACCAGCCCCAGGAGGCGGCTCT
CCTCCTCCTCCAGGTGGTGCTCCTCCACCACCAGGAGGTGCCCCACCCCC
TCCAGGCGGTGCCCCTCCACCACCAGGTGGTGTCCCACCCCCTCCAGGTG
GTGCTCCCCCACCACCAGCAGGAAAGAAACCACCAACAGAAGCCAAATCT
GACGGAGATGATCAAGAAGATTTGAAAGCCTTACTAGATGAAAGTATTGG
AAACTTAGTCAAAGCAAATCAAGCTGTAGAAACACTCTTATCTGCCAGCA
GTGGAGgaTCATCTAGTGGACCCTCTCCATCTGGAGGTGCTCCCCCACCC
GGTGGTGCTCCTCCTCCTCCAGGCGGTGCCCCTCCACCCCCAGGCGGTGC
TCCTCCTCCAGGCGGTGCCCCTCCT
Run BLAST on NCBI

transcript from alignment at scaffold_462:880930..884832-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067017 ID=TCONS_00067017|Name=TCONS_00067017|organism=Clytia hemisphaerica|type=transcript|length=3903bp|location=Sequence derived from alignment at scaffold_462:880930..884832- (Clytia hemisphaerica)
CTTTGAAAATCATTTGCTGTATCAAAATTTTGACGAAAATCTTTTATTTT
TGAATACAATTTTATCGTTTTGTTTTGATTTTTAAGAGAATTGACATTTA
ATCGGAGAAAAGGGAGCATATACATTTTCCAGGTGAGTAAACCATTTACT
ACCAATTTGATAGATTTTGTTCTTTTGATAAATTGGACTCGTATTTTAAT
CATTATTTGGCTTTGCTTGATTGAAAAAGTGATTTTTTCAGGAGCATCTT
AAGAAATATTATTGCAATCGTTAAAAGATAATGATATGTTTTGTTTGTTT
AATGATATTTTGAATTGGATATTTGCTATTGAGCACCTGGCTGACTGCTT
TCTCGCTATTCAAATTGTTACAAATTAAAAAAAGAATCATTAGAAACCCC
ATAACTCGAACACGCAACCTAAATATTTTATTTGAGTGATACACGGTGAA
TCTACCATTGAGTTTAAAGCCCCGAAGAAATTAAAATTGAAACTTTTGGA
TGGGAAATGAAGTCACTTAGTGTCTATCTGAAACGTGTAACCTGCGTGGT
TTTCACATAAACGCCAGAGTGAAAGAAATATTCATCGCTAGATTTCGAAA
AATACGCCACGTGAAAACAAAGAAAGCACTAGATTCAATCCGTTATTCTG
AATACGCAAATCTTTAATGCTTTACTTTTTCTTGCTTGAGAAGGGCTGAA
GATTTTTCTTAGAGCCCTTTGAGCCTTAAACTCAATGTACCCATTGTACT
CTGTCACATATTCTTGTCGCTATTAAATTTTAATTGTCTTTCTTTCTTTT
CATTCAGCATGAAAGCTCTTCACGTGGGAGTGATGTTACTCCTACTTGTG
GCTTTGATCGATTGTCGGGCTATCAAAAAAGGTATACTTTTATTCAATGT
TTTTTACCTAGCTAAGGAATCTTCCTGAATTTTCAATGCAATGAAAGTAG
AAAGAGCATCCCTTCTCGGTTACCTTTTCATGTTGTAATGATCCTTCTTT
GTTATGTTTTTCGCTAAATTCGTCTTCACTGTCGATGCATAAAATTTCAT
TTACCTTATGGGGAGGAAAATAGTCATGATTTATCTATTTATTTCGGTCT
CGATTATTTGGCCCCGATTCTTTGGCGCCTTTTCATAAATTATCTTGAGT
GCAACGACTGCCTCGTTTTGAAACCATTGTCAAGGTGACTAAATTCCTTG
GGTCTTCGAGTGCTACTTTCTATAAGTAGAGTAAACTTCTTATGAACTCC
TCTGGGAATCAATTACCACAGTAATATTTTGAAAACGAGGAGTTGCTAGT
GACGTAATTTATGGAAAGGTTTTATAAAAGTAAATATTTTCTGTGTTTGC
ATGATTTTAAGACAAATTCTACAGCTTGATTTTGTTTTGGCTAGGTGTTA
TTTTCTTCTCTCCTAATACTGTATATGATTATATGTACGGCCTTGCCCCC
CATTCTTTGCTTACAATATATGCACGACCTAATCATCCAAGTTAAAACTG
CAATGCATGAGACAGTATCAAATTAAAATAGTCTAGAGTAATCTTAGACC
AATTCTAGTCAGGCGTGATGTGTGAACTTAAGGGATTTTTCGAAATAAAG
AATAAAGCAATTTCGGAACAAATTTTGAAAAAAAACTTTTTTGAAATTTT
TGAATAATTCCCTTTACTTTTTTAGGGAAAGATCACAAAAAGTCTTCAAA
GTTATCACATCATGCTCGTAAATTTGCTACCGAAGCCTCGAAAAGTATTT
ATCAGCATGCGCTAGACGAAACTAAAAAAGACTTGGGAGAGGCGATAGAT
AGTGCAGTTCAAGCATATACTGAACAGACTATTGGAGGTAGGATACATAC
AAGGCTAACAAAGTGAACTTCGCCATATTTTAGAATACCTGCGACTCACA
ACCCCAACCCCCCGGTCACGAGTCCCTGATGTAACTCACTGGAAATAAAT
GGAACCTTTTCCCAATTATTACAATAGATAACATCCTGTTCAAAGAATGA
ATGTTCTATCCCATTTCATAATGTGCTTCTCATTGTAAATCCACTCTCCA
TACATTTAACGAGATGTACATACCCCTAGACTCGTCATTTTTGAGCATTT
TCACAAAGACAATTTTTACATAGAGATGACCTAGAATAGATTTGCATGTC
TTACAACAACAACAACACATCTACTGTAGAAAAATGCCAAAAATAACTTG
TATCGCGCATGTATCGTCATTTAACCAAACGCATTATAAACAGGATTTAG
CTGAACAATCTAAAAAAGCAAACACTTTCTTACACCATCAACTCCATTAT
TCGACCAAACTTCTTCATTTTTCAAAGGTCATAAAGGCAAAAAGAAAGAA
GTCACGCCAGATACATCTTCAGAGGACCAAAGTAAACGACATGTCCAAAG
TTATAATGATCCTTTAGCTGAGCAAAACCCTGATGAAGATGAAGCTCATC
CAATGCCACAACCAGGCCATGTTCCACAAAACTTAAATGGGATTATCCAA
AAATATAAACCAAAGAAAGTTCAAGATGATAAGAAAAACAAAAACAAAAA
CAAACAAGACAATAAGCAGTCATATGCTGCAGGAACTTGTAAGTTAATAA
AATTCCTTTCCTTCAGCAGTGTAACCCTTTCATAAATTTAAGTTTGGTTA
AACCCTTCTTAAACTAATTTTTCAAGATTGTGCTTTTCTCAGATGCTTTT
TTATACTTTGAGATAGTTCTGTTAGTTTTAAACTTCGTAGATTAAAGTGT
TACGATTGATGAAATTGAGATTCAGTGTAGTTTTGACATCTTTCATTCCC
TTTAGCCGATTCAGAAAATTCAGAGGAAGCACCTGATGAAGCTGAGGCAC
CACCACCAGGAGGTGCCCCACCCGCAGGTGGTAACCCACCACCTCCAGGA
GGTGCTCAGCCACCTCCTGCTGGAGGGCAGCCCACAACTACTCCAGCACC
ACCTCCTGCTGGTGATGATGATGACAGTGATGATAGCGATGATGATGCTC
AGCCACCTGAACAAAAACCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCA
GGTGGTGCTCCTCCACCACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGC
CCCTCCACCACCAGGTGGTGTCCCACCCCCTCCAGGTGGTGCTCCCCCAC
CACCAGCAGGAAAGAAACCACCAACAGAAGCCAAATCTGACGGAGATGAT
CAAGAAGATTTGAAAGCCTTACTAGATGAAAGTATTGGTAAGATGTCCAG
CCATTCACAACGAATTCTAAAATAAAGACTGGAATGGAAAAGGAAACGAT
CTAGAACGTTGAAGATCCGAAAAACCGGATTTTCTTCAAGGTTGAAGAGA
TTCTTTCAGATGTCAAATAATGGCTGCTGCAGATATGGAAATTTGGAAAC
CTCGTTAAAAAATCAGATTCCCAATTCCAGTCTTAATTTTGGAGTTCGTT
GATCAAATCAGTTAAATCTAAAAGTTATTCAAAAATAAAATCTCGATGCA
TCAAAAGCTAATAGATTCTAATTAGTCACTTTTGAGTATCACTTCAATAT
TCAAATAGGTCAAAAAACCTCCTTTTCTTTCTTTTCATCTATTTAGGAAA
CTTAGTCAAAGCAAATCAAGCTGTAGAAACACTCTTATCTGCCAGCAGTG
GAGGTAAGAGCTTTTTACCGTTTTCTTCTCATGCCAATACTGCACCCACT
AAACCAGGAATTTCCTCATCTTATCTTTGTAATTATTTTTACTTTTAGGA
TCATCTAGTGGACCCTCTCCATCTGGAGGTGCTCCCCCACCCGGTGGTGC
TCCTCCTCCTCCAGGCGGTGCCCCTCCACCCCCAGGTGGCGTTCCTCCTC
CAGGCGGTGCCCCTCCTCCAGGCGGTGCTCCTCCTCCAGGCGGTGCCCCT
CCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041859XLOC_041859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067017-exon-scaffold_462-1575043694:884701..884832TCONS_00067017-exon-scaffold_462-1575043694:884701..884832Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1575043694:883952..884025TCONS_00067017-exon-scaffold_462-1575043694:883952..884025Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1575043694:882245..882505TCONS_00067017-exon-scaffold_462-1575043694:882245..882505Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1575043694:881596..882027TCONS_00067017-exon-scaffold_462-1575043694:881596..882027Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1575043694:881180..881236TCONS_00067017-exon-scaffold_462-1575043694:881180..881236Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1575043694:880998..881084TCONS_00067017-exon-scaffold_462-1575043694:880998..881084Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1575043694:880930..880961TCONS_00067017-exon-scaffold_462-1575043694:880930..880961Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1510915933:884701..884832TCONS_00067017-exon-scaffold_462-1510915933:884701..884832Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1510915933:883952..884025TCONS_00067017-exon-scaffold_462-1510915933:883952..884025Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1510915933:882245..882505TCONS_00067017-exon-scaffold_462-1510915933:882245..882505Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1510915933:881596..882027TCONS_00067017-exon-scaffold_462-1510915933:881596..882027Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1510915933:881180..881236TCONS_00067017-exon-scaffold_462-1510915933:881180..881236Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1510915933:880998..881084TCONS_00067017-exon-scaffold_462-1510915933:880998..881084Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1510915933:880930..880961TCONS_00067017-exon-scaffold_462-1510915933:880930..880961Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1491911889:884701..884832TCONS_00067017-exon-scaffold_462-1491911889:884701..884832Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1491911889:883952..884025TCONS_00067017-exon-scaffold_462-1491911889:883952..884025Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1491911889:882245..882505TCONS_00067017-exon-scaffold_462-1491911889:882245..882505Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1491911889:881596..882027TCONS_00067017-exon-scaffold_462-1491911889:881596..882027Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1491911889:881180..881236TCONS_00067017-exon-scaffold_462-1491911889:881180..881236Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1491911889:880998..881084TCONS_00067017-exon-scaffold_462-1491911889:880998..881084Clytia hemisphaericaexon
TCONS_00067017-exon-scaffold_462-1491911889:880930..880961TCONS_00067017-exon-scaffold_462-1491911889:880930..880961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:880930..884832 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.38817	0.439364	24.0904	31.5266	3.26034	8.21668	21.8601	17.3909	32.7196	34.8768	17.1572	69.1556	36.602	40.1312	5.18821e-05	0	14.4456	12.2854	6.89421	6.96163	19.8697	19.4869	0	0.491641	0	0.329393
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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