XLOC_004579 (gene) - C. hemisphaerica

Overview
NameXLOC_004579
Unique NameXLOC_004579
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000082:452522..458556+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004579 ID=XLOC_004579|Name=XLOC_004579|organism=Clytia hemisphaerica|type=gene|length=6035bp|location=Sequence derived from alignment at sc0000082:452522..458556+ (Clytia hemisphaerica)
GTTTTATGTGAGCTCGATAATAAAAACATTCCAGTAAACTTCGTAAGGGA
AACCAACCTTAGGAGGGAATATTAATGAATTATCAAATTTATCCAGATGA
GTCCTGGGTACTTCTACCATGTCATATTTGATTCGAGAACACCTGTAAGA
TATAAAATAGGTTTTTCGTTTTGAGTGAGCAGAGTAATGAGACAAAATAC
TTTCCCTTTGGAATTTCTCGTGGAATACATCTTCGTCAGGGGAATGAACG
AATCTGGTCAGCTGGTAAAGAGATTTTtcttttagaattcttttattttt
agtatgttgtcaacaaaaataaatcaattatCAAAAACAGTATTATTACg
taaacttttgattggaaacGTATCAGCACAATCTAAGGTATGatttaaaa
taattatttttggaaaatcatttTGTAAACATAGCGTCGGCCTGGgtcta
ggtcccaggcaaaaattaagttccctctgagttttaagtccctCCAAAGA
TTCTTGAAATATTTGTGGTAGCCCCCAGGGCATCCGacacttttaaaagt
ttttttctgctAAAAAAGGGTTATTCAATGTGTTGCAGTTCGAAGGTTAT
GACAAAATGTTTTGCtcattttctataaaaaacttttgctcattttctat
aaaaaactttcaacttcatgagctttaatttgagtaattgaagaaTTGAA
GCCAACCATTAAGATAAAGTATTCAGCTGTCACGTTGAATGATGAGGTTT
CAGCTCCCCAAAGTACATTAGGTCccccaaatatttgaaacatcttTAGC
CCCCACCTTTTTGGGGCTTTTTGGAGGatgtaaccccccccccaactAGC
AGGGCTGACGCTATGAAAACTTTAGAATAATTACATCTCTTATATATGAA
TACATTATGATACATAATAAACTTTATAATATATTACAGAAATGATTTGA
TACAACTGTTTATTACCCAATACAATGAAGCtacatttttatcttttctt
acTTTAGAACCTACATGGTATAGTTGCTGGCTGCTACCAAGCCCCAGGTG
AAGATGGTGAAATTGTATTAACAGGGACGACTGAATCTCTTAACACTGAA
ACTGGTGGCAAACTTTTACAAGCGCTTAACACGTaatatgaatttatttt
cttgaCTAACAAAAAACTTACatccaaaaagtcaaaattacAGAATCAAT
GATGACATGCATTCGAGCACATTACATTACCGTTGATGTTTTCCTTGCAT
TTCAGTTCAAACTTTGATGGGAAACCTGGCAGCGTCCGAACATTCACGAA
TTTATCAGATGTATGAAACTTAttcttgtgaaatatttttcagtcAAATC
GTCGTTTTAGAAATTTATGCTCATTCTCTGTCATTCGCCATTATACTAAC
TGTAGAAATTTGTTTTCTGGTTTAATCGaatctgttttctttttttcacc
aGAAATACCCTTTGCTGACTGTCTGTGGTTTGGGTGAAGAGAATTTGGAT
ATTGATGAGAACGAGTGTTTGGACGAGCGCAAGGAAAATGTACGGATTGG
GGCTGGAggtatttcaattttcttttctttgtacatttttgtaaTGCTTT
GTATATCCCTGTGATCATTCCCTTTTGCTCTATAACTGGATGATTCAGGT
ATTTTTGTTTCAGGTAAGTGTTTGATTGGAGGGGAAGGTTTTTAAAGtct
attttcattaaaatcttcGAATAACCTTTCTTTCAGCGGGCGCCAAAGAG
TTGAAGAAATACAAAGTGGACGTGATGTCATTGGATGATTGTGGAGATGC
TCAATGTAATGTCTTCTTTCTTTTGATCAGTGATGGAAACTGTTTTATTT
GAGTTCTTCTCATTGCACTACATTACTGTCACTAATTTAGAGTTGAAGAA
TTCGAAACATTTTCAGCTCTTCCTTCTTTCCTTGTGTATTAACAAGATGT
GATTAATTTGTTCTTTCGTGATAGCTGCTGCCGAAGGAGTTGGATTGAGT
ACTCATTCTTTCCAAGAATTCAAAtcgaaaaaggaaaatgaaaccTCTTG
CACATTCAATGTCCTGTCCTCTGCGTGAGTATTTTACTTTTAATCCAAAC
TTAGGTATAAAGAAAAGGTTTGATCTTATAAACTTCTCACTTACTTTATG
ATGTCTTTATCTGAGAAATCATAGAGATAAAATCCAATGTCCATTGAatt
tatttcagccaaacttcAGAGTTCGAACAAGGTTTGGCGATGGCAGAGGG
TCAGAATTGGGCTCGTGATTTGATGGAAACGCCTTCTAATTTCAAATATC
CTGAACTGTTTGCTGACAAAGTTGTCCAACGATTCTCGGCGTTCAAGAAT
GTTGATGTCATCGTCAGGTGAATAAATTATTGTGAATGATTTTGATCTTT
GAAAATGAACGCATTTTTCCGACTCCAGGTAGGTTTGTCGTAACAAGAAC
TTTtacatataaaatacaaaaacctAATGAAACAAatagaagaagaaaca
aaatcattaattttGAGTTGACCAATAATAGTAcatgttttataagaata
tgctaagaactGTCACCATcgtatatttttacaaccgaACCGTTAATAAG
AATCTCGAGACTTCACAAAATtgtcatacttttttttttgggtgGGGGGT
ATGTATATAGATATAGGCAGGGTTTAGATTCTAAACTTAGAATGTCGTTA
AGAATATTATGGGTTGATTTTTATCCTAAAGttgagaatatccatgatga
aatggaaaaaaataccATTCTTATAACAAAAGCGTTTAGGGTTTAAGAAT
GTCCCTGAGCCATTGGCTCCTTGCAAAGTATCACCCTGTATTAGCTGTTT
GGACCATCTTGCAAGCAGCgggctttcattttctttcattattttcCAGA
GATGATGTCTGGGCGCGAGAGAAAGGAATGGATTGTTTCCTGTCAGTTGG
TAAAGGTTCCGATAAGAAACCCATGTTTGTGGAACTTCATTACAACCAAA
ATGCAGATGAACAAAAGAAAGTGGTTCTTGTTGGAAAAGGTAATTCATTT
ATCTACATCAACAAACATCCGGTTGTATGAAGTAGTTAGACCCCGCTGGC
TTGAATGATTGATGCANAATTGGGCTCGTGATTTGATGGAAACGCCTTCT
AATTTCAAATATCCTGAACTGTTTGCTGACAAAGTTGTTCAACGATTCTC
GGCGTTCAAGAATGTTGATGTCATCGTCAGGTGAATAAATTATTGTGAAT
GATTTTGATCTTTGAAAATGAACGCATTTTTCCGACTCCAGGTAGGTTTG
TCGTAACAAGAACTTTtacatataaaatacaaaaacctAATGAAACAAat
agaagaagaaacaaaatcattaattttGAGTTGACCAATAATAGTAcatg
ttttataagaatatgctaagaactGTCACCATcgtatatttttacaaccg
aACCGTTAATAAGAATCTCGAGACTTCACAAAATtgtcatactttttttt
ttgggtgGGGGGTATGTATATAGATATAGGCAGGGTTTAGATTCTAAACT
TAGAATGTCGTTAAGAATATTATGGGTTGATTTTTATCCTAAAGttgaga
atatccatgatgaaatggaaaaaaataccATTCTTATAACAAAAGCGTTT
AGGGTTTAAGAATGTCCCTGAGCCATTGGCTCCTTGCAAAGTATCACCCT
GTATTAGCTGTTTGGACCATCTTGCAAGCAGcggtttttcattttctttc
attattttcCAGAGATGATGTCTGGGCGCGAGAGAAAGGAATGGATTGTT
TCCTGTCAGTTGGTAAAGGTTCCGATAAGAAACCCATGTTTGTGGAACTT
CATTACAACCAAAATGCAGATGAACAAAAGAAAGTGGTTCTTGTTGGAAA
AGGTAATTCATTTATCTACATCAACAAACATCCGGTTGTATGAAGTAGTT
AGACCCCGCTGGCTTGAATGATTGATGCACGCGAAGACGTTGAATTGCAA
GAGTTTGATTTGTGACGAatcaaatagcttaaaacggATCACGTGTCTTA
AATTTCATTCATCTCTCCAGTTGGCCGGGAAAAACAAAGATAAAGCTTTG
AGGCaactttttgaacaattttttatttttattttaggaaTCACATTCGA
TACgtaagtgacgtcattttttcgtTTTGTGTGATTGTTGAGTGTTAAAA
GACGAAGCAGAGAAGATATTCATCTACATATTCATCGACAACTCAGGAAA
CTTTCCGTACTACTCATCATGTTAATAAGAAGATGTgcactgaaaataat
tttcaaaatcagcTGGCTATCGGATTAAAAGTGTATCTTGATCGGTTTAC
GGGTGACGTAATAAAATCCAGGGGGTCTCGAGTCAAAAAGGAGATTTTGC
TGATCGAGTTggtaagattttatttattataattttgaCTTCTTCATTTC
ATCTCTCTAGTGGCGGTATTTCGATCAAACCTAGTAGTGGGATGGGTTTG
ATGCGGGGAGACATGGGTGGAGCCGCTTGCGTTTTGGCTACGCTGCACAT
CATTGCAAAATTGAAGCTACCTGTCAATTTATCAGTGCTGGTTCCCATGG
CAGAAAATATGCCGTCTGATCGAGCAGCCAAACCAGGAGATGTTTTTACT
GCACTCAATGGAAAGACCGTCGAGGTTGGTTCTATTTTACTATCCGAGGA
CGCTGGTTAGAAAGATATTCGTGTTATGAGCTTTTGTACCATATCTTGTA
CATATCCATTCTTTCAAAGATGTCAAATAAATGGGCCccttgtgtttttt
gtttgctgtttttttttactctcGCAGCAGAACCCCTTATAACATTGATA
AATTTCTGAAAACACTTTTATCTGTCAAAAAAATCcattattttgctcca
aaatcTGATAATGACTGTTCGGATAATAATCCCCCTCGCCTTGTAATCAG
CATCTCCCCATTCAGCAAATTTCAAACTCCCTTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTGGCGATGGCAGAGGG
TCAGAATTGGGCTCGTGATTTGATGGAAACGCCTTCTAATTTCAAATATC
CTGAACTGTTTGCTGACAAAGTTGTTCAACGATTCTCGGCGTTCAAGAAT
GTTGATGTCATCGTCAGGTGAATAAATTATTGTGAATGATTTTGATCTTT
GAAAATGAACGCATTTTTCCGACTCCAGGTAGGTTTGTCGTAACAAGAAC
TTTtacatataaaatacaaaaacctAATGAAACAAatagaagaagaaaca
aaatcattaattttGAGTTGACCAATAATAGTAcatgttttataagaata
tgctaagaactGTCACCATcgtatatttttacaaccgaACCGTTAATAAG
AATCTCGAGACTTCACAAAATtgtcatacttttttttttgggtgGGGGGT
ATGTATATAGATATAGGCAGGGTTTAGATTCTAAACTTAGAATGTCGTTA
AGAATATTATGGGTTGATTTTTATCCTAAAGttgagaatatccatgatga
aatggaaaaaaataccATTCTTATAACAAAAGCGTTTAGGGTTTAAGAAT
GTCCCTGAGCCATTGGCTCCTTGCAAAGTATCACCCTGTATTAGCTGTTT
GGACCATCTTGCAAGCAGCgggctttcattttctttcattattttcCAGA
GATGATGTCTGGGCGCGAGAGAAAGGAATGGATTGTTTCCTGTCAGTTGG
TAAAGGTTCCGATAAGAAACCCATGTTTGTGGAACTTCATTACAACCAAA
ATGCAGATGAACAAAAGAAAGTGGTTCTTGTTGGA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00008118TCONS_00008118Clytia hemisphaericatranscript
TCONS_00008119TCONS_00008119Clytia hemisphaericatranscript
TCONS_00008120TCONS_00008120Clytia hemisphaericatranscript
TCONS_00008121TCONS_00008121Clytia hemisphaericatranscript
TCONS_00008122TCONS_00008122Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00008122-proteinTCONS_00008122-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:452522..458556 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
109.22	116.01	24.15	16.97	40.22	32.31	38.27	40.63	40.22	39.93	40.34	42.72	40.55	35.57	53.89	73.82	92.77	85.11	9.24	10.72	35.81	36.96	56.07	51.79	42.61	45.04	46.13	32.36	56.75	45.85