TCONS_00008121 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008121
Unique Name	TCONS_00008121
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	846

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000082:452813..458556+

transcript sequence

>TCONS_00008121 ID=TCONS_00008121|Name=TCONS_00008121|organism=Clytia hemisphaerica|type=transcript|length=846bp
tttatttttagtatgttgtcaacaaaaataaatcaattatCAAAAACAGT
ATTATTACgtaaacttttgattggaaacGTATCAGCACAATCTAAGAACC
TACATGGTATAGTTGCTGGCTGCTACCAAGCCCCAGGTGAAGATGGTGAA
ATTGTATTAACAGGGACGACTGAATCTCTTAACACTGAAACTGGTGGCAA
ACTTTTACAAGCGCTTAACACTTCAAACTTTGATGGGAAACCTGGCAGCG
TCCGAACATTCACGAATTTATCAGATAAATACCCTTTGCTGACTGTCTGT
GGTTTGGGTGAAGAGAATTTGGATATTGATGAGAACGAGTGTTTGGACGA
GCGCAAGGAAAATGTACGGATTGGGGCTGGAgCGGGCGCCAAAGAGTTGA
AGAAATACAAAGTGGACGTGATGTCATTGGATGATTGTGGAGATGCTCAA
TCTGCTGCCGAAGGAGTTGGATTGAGTACTCATTCTTTCCAAGAATTCAA
AtcgaaaaaggaaaatgaaaccTCTTGCACATTCAATGTCCTGTCCTCTG
CccaaacttcAGAGTTCGAACAAGGTTTGGCGATGGCAGAGGGTCAGAAT
TGGGCTCGTGATTTGATGGAAACGCCTTCTAATTTCAAATATCCTGAACT
GTTTGCTGACAAAGTTGTCCAACGATTCTCGGCGTTCAAGAATGTTGATG
TCATCGTCAGAGATGATGTCTGGGCGCGAGAGAAAGGAATGGATTGTTTC
CTGTCAGTTGGTAAAGGTTCCGATAAGAAACCCATGTTTGTGGAACTTCA
TTACAACCAAAATGCAGATGAACAAAAGAAAGTGGTTCTTGTTGGA

Run BLAST on NCBI

transcript from alignment at sc0000082:452813..458556+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008121 ID=TCONS_00008121|Name=TCONS_00008121|organism=Clytia hemisphaerica|type=transcript|length=5744bp|location=Sequence derived from alignment at sc0000082:452813..458556+ (Clytia hemisphaerica)
tttatttttagtatgttgtcaacaaaaataaatcaattatCAAAAACAGT
ATTATTACgtaaacttttgattggaaacGTATCAGCACAATCTAAGGTAT
GatttaaaataattatttttggaaaatcatttTGTAAACATAGCGTCGGC
CTGGgtctaggtcccaggcaaaaattaagttccctctgagttttaagtcc
ctCCAAAGATTCTTGAAATATTTGTGGTAGCCCCCAGGGCATCCGacact
tttaaaagtttttttctgctAAAAAAGGGTTATTCAATGTGTTGCAGTTC
GAAGGTTATGACAAAATGTTTTGCtcattttctataaaaaacttttgctc
attttctataaaaaactttcaacttcatgagctttaatttgagtaattga
agaaTTGAAGCCAACCATTAAGATAAAGTATTCAGCTGTCACGTTGAATG
ATGAGGTTTCAGCTCCCCAAAGTACATTAGGTCccccaaatatttgaaac
atcttTAGCCCCCACCTTTTTGGGGCTTTTTGGAGGatgtaacccccccc
ccaactAGCAGGGCTGACGCTATGAAAACTTTAGAATAATTACATCTCTT
ATATATGAATACATTATGATACATAATAAACTTTATAATATATTACAGAA
ATGATTTGATACAACTGTTTATTACCCAATACAATGAAGCtacattttta
tcttttcttacTTTAGAACCTACATGGTATAGTTGCTGGCTGCTACCAAG
CCCCAGGTGAAGATGGTGAAATTGTATTAACAGGGACGACTGAATCTCTT
AACACTGAAACTGGTGGCAAACTTTTACAAGCGCTTAACACGTaatatga
atttattttcttgaCTAACAAAAAACTTACatccaaaaagtcaaaattac
AGAATCAATGATGACATGCATTCGAGCACATTACATTACCGTTGATGTTT
TCCTTGCATTTCAGTTCAAACTTTGATGGGAAACCTGGCAGCGTCCGAAC
ATTCACGAATTTATCAGATGTATGAAACTTAttcttgtgaaatatttttc
agtcAAATCGTCGTTTTAGAAATTTATGCTCATTCTCTGTCATTCGCCAT
TATACTAACTGTAGAAATTTGTTTTCTGGTTTAATCGaatctgttttctt
tttttcaccaGAAATACCCTTTGCTGACTGTCTGTGGTTTGGGTGAAGAG
AATTTGGATATTGATGAGAACGAGTGTTTGGACGAGCGCAAGGAAAATGT
ACGGATTGGGGCTGGAggtatttcaattttcttttctttgtacatttttg
taaTGCTTTGTATATCCCTGTGATCATTCCCTTTTGCTCTATAACTGGAT
GATTCAGGTATTTTTGTTTCAGGTAAGTGTTTGATTGGAGGGGAAGGTTT
TTAAAGtctattttcattaaaatcttcGAATAACCTTTCTTTCAGCGGGC
GCCAAAGAGTTGAAGAAATACAAAGTGGACGTGATGTCATTGGATGATTG
TGGAGATGCTCAATGTAATGTCTTCTTTCTTTTGATCAGTGATGGAAACT
GTTTTATTTGAGTTCTTCTCATTGCACTACATTACTGTCACTAATTTAGA
GTTGAAGAATTCGAAACATTTTCAGCTCTTCCTTCTTTCCTTGTGTATTA
ACAAGATGTGATTAATTTGTTCTTTCGTGATAGCTGCTGCCGAAGGAGTT
GGATTGAGTACTCATTCTTTCCAAGAATTCAAAtcgaaaaaggaaaatga
aaccTCTTGCACATTCAATGTCCTGTCCTCTGCGTGAGTATTTTACTTTT
AATCCAAACTTAGGTATAAAGAAAAGGTTTGATCTTATAAACTTCTCACT
TACTTTATGATGTCTTTATCTGAGAAATCATAGAGATAAAATCCAATGTC
CATTGAatttatttcagccaaacttcAGAGTTCGAACAAGGTTTGGCGAT
GGCAGAGGGTCAGAATTGGGCTCGTGATTTGATGGAAACGCCTTCTAATT
TCAAATATCCTGAACTGTTTGCTGACAAAGTTGTCCAACGATTCTCGGCG
TTCAAGAATGTTGATGTCATCGTCAGGTGAATAAATTATTGTGAATGATT
TTGATCTTTGAAAATGAACGCATTTTTCCGACTCCAGGTAGGTTTGTCGT
AACAAGAACTTTtacatataaaatacaaaaacctAATGAAACAAatagaa
gaagaaacaaaatcattaattttGAGTTGACCAATAATAGTAcatgtttt
ataagaatatgctaagaactGTCACCATcgtatatttttacaaccgaACC
GTTAATAAGAATCTCGAGACTTCACAAAATtgtcatacttttttttttgg
gtgGGGGGTATGTATATAGATATAGGCAGGGTTTAGATTCTAAACTTAGA
ATGTCGTTAAGAATATTATGGGTTGATTTTTATCCTAAAGttgagaatat
ccatgatgaaatggaaaaaaataccATTCTTATAACAAAAGCGTTTAGGG
TTTAAGAATGTCCCTGAGCCATTGGCTCCTTGCAAAGTATCACCCTGTAT
TAGCTGTTTGGACCATCTTGCAAGCAGCgggctttcattttctttcatta
ttttcCAGAGATGATGTCTGGGCGCGAGAGAAAGGAATGGATTGTTTCCT
GTCAGTTGGTAAAGGTTCCGATAAGAAACCCATGTTTGTGGAACTTCATT
ACAACCAAAATGCAGATGAACAAAAGAAAGTGGTTCTTGTTGGAAAAGGT
AATTCATTTATCTACATCAACAAACATCCGGTTGTATGAAGTAGTTAGAC
CCCGCTGGCTTGAATGATTGATGCANAATTGGGCTCGTGATTTGATGGAA
ACGCCTTCTAATTTCAAATATCCTGAACTGTTTGCTGACAAAGTTGTTCA
ACGATTCTCGGCGTTCAAGAATGTTGATGTCATCGTCAGGTGAATAAATT
ATTGTGAATGATTTTGATCTTTGAAAATGAACGCATTTTTCCGACTCCAG
GTAGGTTTGTCGTAACAAGAACTTTtacatataaaatacaaaaacctAAT
GAAACAAatagaagaagaaacaaaatcattaattttGAGTTGACCAATAA
TAGTAcatgttttataagaatatgctaagaactGTCACCATcgtatattt
ttacaaccgaACCGTTAATAAGAATCTCGAGACTTCACAAAATtgtcata
cttttttttttgggtgGGGGGTATGTATATAGATATAGGCAGGGTTTAGA
TTCTAAACTTAGAATGTCGTTAAGAATATTATGGGTTGATTTTTATCCTA
AAGttgagaatatccatgatgaaatggaaaaaaataccATTCTTATAACA
AAAGCGTTTAGGGTTTAAGAATGTCCCTGAGCCATTGGCTCCTTGCAAAG
TATCACCCTGTATTAGCTGTTTGGACCATCTTGCAAGCAGcggtttttca
ttttctttcattattttcCAGAGATGATGTCTGGGCGCGAGAGAAAGGAA
TGGATTGTTTCCTGTCAGTTGGTAAAGGTTCCGATAAGAAACCCATGTTT
GTGGAACTTCATTACAACCAAAATGCAGATGAACAAAAGAAAGTGGTTCT
TGTTGGAAAAGGTAATTCATTTATCTACATCAACAAACATCCGGTTGTAT
GAAGTAGTTAGACCCCGCTGGCTTGAATGATTGATGCACGCGAAGACGTT
GAATTGCAAGAGTTTGATTTGTGACGAatcaaatagcttaaaacggATCA
CGTGTCTTAAATTTCATTCATCTCTCCAGTTGGCCGGGAAAAACAAAGAT
AAAGCTTTGAGGCaactttttgaacaattttttatttttattttaggaaT
CACATTCGATACgtaagtgacgtcattttttcgtTTTGTGTGATTGTTGA
GTGTTAAAAGACGAAGCAGAGAAGATATTCATCTACATATTCATCGACAA
CTCAGGAAACTTTCCGTACTACTCATCATGTTAATAAGAAGATGTgcact
gaaaataattttcaaaatcagcTGGCTATCGGATTAAAAGTGTATCTTGA
TCGGTTTACGGGTGACGTAATAAAATCCAGGGGGTCTCGAGTCAAAAAGG
AGATTTTGCTGATCGAGTTggtaagattttatttattataattttgaCTT
CTTCATTTCATCTCTCTAGTGGCGGTATTTCGATCAAACCTAGTAGTGGG
ATGGGTTTGATGCGGGGAGACATGGGTGGAGCCGCTTGCGTTTTGGCTAC
GCTGCACATCATTGCAAAATTGAAGCTACCTGTCAATTTATCAGTGCTGG
TTCCCATGGCAGAAAATATGCCGTCTGATCGAGCAGCCAAACCAGGAGAT
GTTTTTACTGCACTCAATGGAAAGACCGTCGAGGTTGGTTCTATTTTACT
ATCCGAGGACGCTGGTTAGAAAGATATTCGTGTTATGAGCTTTTGTACCA
TATCTTGTACATATCCATTCTTTCAAAGATGTCAAATAAATGGGCCcctt
gtgttttttgtttgctgtttttttttactctcGCAGCAGAACCCCTTATA
ACATTGATAAATTTCTGAAAACACTTTTATCTGTCAAAAAAATCcattat
tttgctccaaaatcTGATAATGACTGTTCGGATAATAATCCCCCTCGCCT
TGTAATCAGCATCTCCCCATTCAGCAAATTTCAAACTCCCTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTGGCGAT
GGCAGAGGGTCAGAATTGGGCTCGTGATTTGATGGAAACGCCTTCTAATT
TCAAATATCCTGAACTGTTTGCTGACAAAGTTGTTCAACGATTCTCGGCG
TTCAAGAATGTTGATGTCATCGTCAGGTGAATAAATTATTGTGAATGATT
TTGATCTTTGAAAATGAACGCATTTTTCCGACTCCAGGTAGGTTTGTCGT
AACAAGAACTTTtacatataaaatacaaaaacctAATGAAACAAatagaa
gaagaaacaaaatcattaattttGAGTTGACCAATAATAGTAcatgtttt
ataagaatatgctaagaactGTCACCATcgtatatttttacaaccgaACC
GTTAATAAGAATCTCGAGACTTCACAAAATtgtcatacttttttttttgg
gtgGGGGGTATGTATATAGATATAGGCAGGGTTTAGATTCTAAACTTAGA
ATGTCGTTAAGAATATTATGGGTTGATTTTTATCCTAAAGttgagaatat
ccatgatgaaatggaaaaaaataccATTCTTATAACAAAAGCGTTTAGGG
TTTAAGAATGTCCCTGAGCCATTGGCTCCTTGCAAAGTATCACCCTGTAT
TAGCTGTTTGGACCATCTTGCAAGCAGCgggctttcattttctttcatta
ttttcCAGAGATGATGTCTGGGCGCGAGAGAAAGGAATGGATTGTTTCCT
GTCAGTTGGTAAAGGTTCCGATAAGAAACCCATGTTTGTGGAACTTCATT
ACAACCAAAATGCAGATGAACAAAAGAAAGTGGTTCTTGTTGGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004579	XLOC_004579	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000082	supercontig	sc0000082:452813..458556 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
102.417	111.2	22.0467	16.244	0.0420934	0.00294204	0	0	0.000395357	1.96206	2.37017	0.00942781	7.85219e-09	3.47587e-06	51.3349	64.2678	52.6715	63.94	8.30337	10.0215	34.1089	35.3145	53.1718	25.5731	0	0	28.6541	31.0353	53.7983	43.7314

Blast

[Close]

BLAST of TCONS_00008121 vs. Swiss-Prot (Human)
Match: AMPL (Cytosol aminopeptidase OS=Homo sapiens GN=LAP3 PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.895e-44
Identity = 93/250 (37.20%), Postives = 135/250 (54.00%), Query Frame = 1

Query:  106 GIVAGCYQAPGEDGEIVLTGTTESLNTETGGKLLQALNTSNFDGKPGSVRTFTNLSDKYPLLTVCGLGEENLDIDENECLDERKENVRIGAGAGAKELKKYKVDVMSLDDCGDAQSAAEGVGLSTHSFQEFKSKKENETSCTFNVLSSAQTSEFEQGLAMAEGQNWARDLMETPSNFKYPELFADKVVQRF-SAFKNVDVIVRDDVWAREKGMDCFLSVGKGSDKKPMFVELHY--NQNADEQKKVVLVG 846
            G+V G Y    ED     T   E+ +    GKL + LN S    K G  RTF  L   +P + + GLG++   IDE E   E KEN+R    AG ++++  ++  + +D CGDAQ+AAEG  L  + + + K KK+   S    +  S     +++G+  A GQN AR LMETP+N   P  FA+ + +   SA    +V +R   W  E+ M  FLSV KGSD+ P+F+E+HY  + NA+E   +V VG
Sbjct:   35 GLVLGIYSKEKEDDVPQFTSAGENFDKLLAGKLRETLNISGPPLKAGKTRTFYGLHQDFPSVVLVGLGKKAAGIDEQENWHEGKENIRAAVAAGCRQIQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSA--KLYGSGDQEAWQKGVLFASGQNLARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWIEEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANE-PPLVFVG 281

The following BLAST results are available for this feature:

BLAST of TCONS_00008121 vs. Swiss-Prot (Human)

BLAST of TCONS_00008121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AMPL	1.895e-44	37.20	Cytosol aminopeptidase OS=Homo sapiens GN=LAP3 PE=...	[more]

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TCONS_00008121 (transcript) - C. hemisphaerica