TCONS_00008120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008120
Unique NameTCONS_00008120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008120 ID=TCONS_00008120|Name=TCONS_00008120|organism=Clytia hemisphaerica|type=transcript|length=849bp
tttatttttagtatgttgtcaacaaaaataaatcaattatCAAAAACAGT
ATTATTACgtaaacttttgattggaaacGTATCAGCACAATCTAAGAACC
TACATGGTATAGTTGCTGGCTGCTACCAAGCCCCAGGTGAAGATGGTGAA
ATTGTATTAACAGGGACGACTGAATCTCTTAACACTGAAACTGGTGGCAA
ACTTTTACAAGCGCTTAACACTTCAAACTTTGATGGGAAACCTGGCAGCG
TCCGAACATTCACGAATTTATCAGATAAATACCCTTTGCTGACTGTCTGT
GGTTTGGGTGAAGAGAATTTGGATATTGATGAGAACGAGTGTTTGGACGA
GCGCAAGGAAAATGTACGGATTGGGGCTGGAgCGGGCGCCAAAGAGTTGA
AGAAATACAAAGTGGACGTGATGTCATTGGATGATTGTGGAGATGCTCAA
TCTGCTGCCGAAGGAGTTGGATTGAGTACTCATTCTTTCCAAGAATTCAA
AtcgaaaaaggaaaatgaaaccTCTTGCACATTCAATGTCCTGTCCTCTG
CccaaacttcAGAGTTCGAACAAGGTTTGGCGATGGCAGAGGGTCAGAAT
TGGGCTCGTGATTTGATGGAAACGCCTTCTAATTTCAAATATCCTGAACT
GTTTGCTGACAAAGTTGTCCAACGATTCTCGGCGTTCAAGAATGTTGATG
TCATCGTCAGAGATGATGTCTGGGCGCGAGAGAAAGGAATGGATTGTTTC
CTGTCAGTTGGTAAAGGTTCCGATAAGAAACCCATGTTTGTGGAACTTCA
TTACAACCAAAATGCAGATGAACAAAAGAAAGTGGTTCTTGTTGGAAAA
Run BLAST on NCBI

transcript from alignment at sc0000082:452813..456422+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008120 ID=TCONS_00008120|Name=TCONS_00008120|organism=Clytia hemisphaerica|type=transcript|length=3610bp|location=Sequence derived from alignment at sc0000082:452813..456422+ (Clytia hemisphaerica)
tttatttttagtatgttgtcaacaaaaataaatcaattatCAAAAACAGT ATTATTACgtaaacttttgattggaaacGTATCAGCACAATCTAAGGTAT GatttaaaataattatttttggaaaatcatttTGTAAACATAGCGTCGGC CTGGgtctaggtcccaggcaaaaattaagttccctctgagttttaagtcc ctCCAAAGATTCTTGAAATATTTGTGGTAGCCCCCAGGGCATCCGacact tttaaaagtttttttctgctAAAAAAGGGTTATTCAATGTGTTGCAGTTC GAAGGTTATGACAAAATGTTTTGCtcattttctataaaaaacttttgctc attttctataaaaaactttcaacttcatgagctttaatttgagtaattga agaaTTGAAGCCAACCATTAAGATAAAGTATTCAGCTGTCACGTTGAATG ATGAGGTTTCAGCTCCCCAAAGTACATTAGGTCccccaaatatttgaaac atcttTAGCCCCCACCTTTTTGGGGCTTTTTGGAGGatgtaacccccccc ccaactAGCAGGGCTGACGCTATGAAAACTTTAGAATAATTACATCTCTT ATATATGAATACATTATGATACATAATAAACTTTATAATATATTACAGAA ATGATTTGATACAACTGTTTATTACCCAATACAATGAAGCtacattttta tcttttcttacTTTAGAACCTACATGGTATAGTTGCTGGCTGCTACCAAG CCCCAGGTGAAGATGGTGAAATTGTATTAACAGGGACGACTGAATCTCTT AACACTGAAACTGGTGGCAAACTTTTACAAGCGCTTAACACGTaatatga atttattttcttgaCTAACAAAAAACTTACatccaaaaagtcaaaattac AGAATCAATGATGACATGCATTCGAGCACATTACATTACCGTTGATGTTT TCCTTGCATTTCAGTTCAAACTTTGATGGGAAACCTGGCAGCGTCCGAAC ATTCACGAATTTATCAGATGTATGAAACTTAttcttgtgaaatatttttc agtcAAATCGTCGTTTTAGAAATTTATGCTCATTCTCTGTCATTCGCCAT TATACTAACTGTAGAAATTTGTTTTCTGGTTTAATCGaatctgttttctt tttttcaccaGAAATACCCTTTGCTGACTGTCTGTGGTTTGGGTGAAGAG AATTTGGATATTGATGAGAACGAGTGTTTGGACGAGCGCAAGGAAAATGT ACGGATTGGGGCTGGAggtatttcaattttcttttctttgtacatttttg taaTGCTTTGTATATCCCTGTGATCATTCCCTTTTGCTCTATAACTGGAT GATTCAGGTATTTTTGTTTCAGGTAAGTGTTTGATTGGAGGGGAAGGTTT TTAAAGtctattttcattaaaatcttcGAATAACCTTTCTTTCAGCGGGC GCCAAAGAGTTGAAGAAATACAAAGTGGACGTGATGTCATTGGATGATTG TGGAGATGCTCAATGTAATGTCTTCTTTCTTTTGATCAGTGATGGAAACT GTTTTATTTGAGTTCTTCTCATTGCACTACATTACTGTCACTAATTTAGA GTTGAAGAATTCGAAACATTTTCAGCTCTTCCTTCTTTCCTTGTGTATTA ACAAGATGTGATTAATTTGTTCTTTCGTGATAGCTGCTGCCGAAGGAGTT GGATTGAGTACTCATTCTTTCCAAGAATTCAAAtcgaaaaaggaaaatga aaccTCTTGCACATTCAATGTCCTGTCCTCTGCGTGAGTATTTTACTTTT AATCCAAACTTAGGTATAAAGAAAAGGTTTGATCTTATAAACTTCTCACT TACTTTATGATGTCTTTATCTGAGAAATCATAGAGATAAAATCCAATGTC CATTGAatttatttcagccaaacttcAGAGTTCGAACAAGGTTTGGCGAT GGCAGAGGGTCAGAATTGGGCTCGTGATTTGATGGAAACGCCTTCTAATT TCAAATATCCTGAACTGTTTGCTGACAAAGTTGTCCAACGATTCTCGGCG TTCAAGAATGTTGATGTCATCGTCAGGTGAATAAATTATTGTGAATGATT TTGATCTTTGAAAATGAACGCATTTTTCCGACTCCAGGTAGGTTTGTCGT AACAAGAACTTTtacatataaaatacaaaaacctAATGAAACAAatagaa gaagaaacaaaatcattaattttGAGTTGACCAATAATAGTAcatgtttt ataagaatatgctaagaactGTCACCATcgtatatttttacaaccgaACC GTTAATAAGAATCTCGAGACTTCACAAAATtgtcatacttttttttttgg gtgGGGGGTATGTATATAGATATAGGCAGGGTTTAGATTCTAAACTTAGA ATGTCGTTAAGAATATTATGGGTTGATTTTTATCCTAAAGttgagaatat ccatgatgaaatggaaaaaaataccATTCTTATAACAAAAGCGTTTAGGG TTTAAGAATGTCCCTGAGCCATTGGCTCCTTGCAAAGTATCACCCTGTAT TAGCTGTTTGGACCATCTTGCAAGCAGCgggctttcattttctttcatta ttttcCAGAGATGATGTCTGGGCGCGAGAGAAAGGAATGGATTGTTTCCT GTCAGTTGGTAAAGGTTCCGATAAGAAACCCATGTTTGTGGAACTTCATT ACAACCAAAATGCAGATGAACAAAAGAAAGTGGTTCTTGTTGGAAAAGGT AATTCATTTATCTACATCAACAAACATCCGGTTGTATGAAGTAGTTAGAC CCCGCTGGCTTGAATGATTGATGCANAATTGGGCTCGTGATTTGATGGAA ACGCCTTCTAATTTCAAATATCCTGAACTGTTTGCTGACAAAGTTGTTCA ACGATTCTCGGCGTTCAAGAATGTTGATGTCATCGTCAGGTGAATAAATT ATTGTGAATGATTTTGATCTTTGAAAATGAACGCATTTTTCCGACTCCAG GTAGGTTTGTCGTAACAAGAACTTTtacatataaaatacaaaaacctAAT GAAACAAatagaagaagaaacaaaatcattaattttGAGTTGACCAATAA TAGTAcatgttttataagaatatgctaagaactGTCACCATcgtatattt ttacaaccgaACCGTTAATAAGAATCTCGAGACTTCACAAAATtgtcata cttttttttttgggtgGGGGGTATGTATATAGATATAGGCAGGGTTTAGA TTCTAAACTTAGAATGTCGTTAAGAATATTATGGGTTGATTTTTATCCTA AAGttgagaatatccatgatgaaatggaaaaaaataccATTCTTATAACA AAAGCGTTTAGGGTTTAAGAATGTCCCTGAGCCATTGGCTCCTTGCAAAG TATCACCCTGTATTAGCTGTTTGGACCATCTTGCAAGCAGcggtttttca ttttctttcattattttcCAGAGATGATGTCTGGGCGCGAGAGAAAGGAA TGGATTGTTTCCTGTCAGTTGGTAAAGGTTCCGATAAGAAACCCATGTTT GTGGAACTTCATTACAACCAAAATGCAGATGAACAAAAGAAAGTGGTTCT TGTTGGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004579XLOC_004579Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008120-exon-sc0000082-1491911889:452813..452908TCONS_00008120-exon-sc0000082-1491911889:452813..452908Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1510915933:452813..452908TCONS_00008120-exon-sc0000082-1510915933:452813..452908Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1575043694:452813..452908TCONS_00008120-exon-sc0000082-1575043694:452813..452908Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1491911889:453529..453653TCONS_00008120-exon-sc0000082-1491911889:453529..453653Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1510915933:453529..453653TCONS_00008120-exon-sc0000082-1510915933:453529..453653Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1575043694:453529..453653TCONS_00008120-exon-sc0000082-1575043694:453529..453653Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1491911889:453777..453831TCONS_00008120-exon-sc0000082-1491911889:453777..453831Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1510915933:453777..453831TCONS_00008120-exon-sc0000082-1510915933:453777..453831Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1575043694:453777..453831TCONS_00008120-exon-sc0000082-1575043694:453777..453831Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1491911889:453974..454079TCONS_00008120-exon-sc0000082-1491911889:453974..454079Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1510915933:453974..454079TCONS_00008120-exon-sc0000082-1510915933:453974..454079Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1575043694:453974..454079TCONS_00008120-exon-sc0000082-1575043694:453974..454079Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1491911889:454258..454326TCONS_00008120-exon-sc0000082-1491911889:454258..454326Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1510915933:454258..454326TCONS_00008120-exon-sc0000082-1510915933:454258..454326Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1575043694:454258..454326TCONS_00008120-exon-sc0000082-1575043694:454258..454326Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1491911889:454496..454595TCONS_00008120-exon-sc0000082-1491911889:454496..454595Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1510915933:454496..454595TCONS_00008120-exon-sc0000082-1510915933:454496..454595Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1575043694:454496..454595TCONS_00008120-exon-sc0000082-1575043694:454496..454595Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1491911889:454730..454888TCONS_00008120-exon-sc0000082-1491911889:454730..454888Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1510915933:454730..454888TCONS_00008120-exon-sc0000082-1510915933:454730..454888Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1575043694:454730..454888TCONS_00008120-exon-sc0000082-1575043694:454730..454888Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1491911889:456284..456422TCONS_00008120-exon-sc0000082-1491911889:456284..456422Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1510915933:456284..456422TCONS_00008120-exon-sc0000082-1510915933:456284..456422Clytia hemisphaericaexon
TCONS_00008120-exon-sc0000082-1575043694:456284..456422TCONS_00008120-exon-sc0000082-1575043694:456284..456422Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:452813..456422 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.217401 0.290256 0.0349721 0.046797 35.9027 28.2827 33.2557 35.6441 37.754 36.3188 35.9908 39.3768 37.2297 31.3585 0.0625921 6.87437 32.7816 17.3208 0.0254277 0.0183894 0.0504239 0.0887775 0.100359 23.2904 35.1531 38.0343 15.6332 0.0723697 0.107938 0.188715
Blast
BLAST of TCONS_00008120 vs. Swiss-Prot (Human)
Match: AMPL (Cytosol aminopeptidase OS=Homo sapiens GN=LAP3 PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 3.749e-45
Identity = 94/251 (37.45%), Postives = 136/251 (54.18%), Query Frame = 1
Query:  106 GIVAGCYQAPGEDGEIVLTGTTESLNTETGGKLLQALNTSNFDGKPGSVRTFTNLSDKYPLLTVCGLGEENLDIDENECLDERKENVRIGAGAGAKELKKYKVDVMSLDDCGDAQSAAEGVGLSTHSFQEFKSKKENETSCTFNVLSSAQTSEFEQGLAMAEGQNWARDLMETPSNFKYPELFADKVVQRF-SAFKNVDVIVRDDVWAREKGMDCFLSVGKGSDKKPMFVELHY--NQNADEQKKVVLVGK 849
            G+V G Y    ED     T   E+ +    GKL + LN S    K G  RTF  L   +P + + GLG++   IDE E   E KEN+R    AG ++++  ++  + +D CGDAQ+AAEG  L  + + + K KK+   S    +  S     +++G+  A GQN AR LMETP+N   P  FA+ + +   SA    +V +R   W  E+ M  FLSV KGSD+ P+F+E+HY  + NA+E   +V VGK
Sbjct:   35 GLVLGIYSKEKEDDVPQFTSAGENFDKLLAGKLRETLNISGPPLKAGKTRTFYGLHQDFPSVVLVGLGKKAAGIDEQENWHEGKENIRAAVAAGCRQIQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSA--KLYGSGDQEAWQKGVLFASGQNLARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWIEEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANE-PPLVFVGK 282          
The following BLAST results are available for this feature:
BLAST of TCONS_00008120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AMPL3.749e-4537.45Cytosol aminopeptidase OS=Homo sapiens GN=LAP3 PE=... [more]
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