TCONS_00008118 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008118
Unique Name	TCONS_00008118
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1140

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000082:452522..456422+

transcript sequence

>TCONS_00008118 ID=TCONS_00008118|Name=TCONS_00008118|organism=Clytia hemisphaerica|type=transcript|length=1140bp
GTTTTATGTGAGCTCGATAATAAAAACATTCCAGTAAACTTCGTAAGGGA
AACCAACCTTAGGAGGGAATATTAATGAATTATCAAATTTATCCAGATGA
GTCCTGGGTACTTCTACCATGTCATATTTGATTCGAGAACACCTGTAAGA
TATAAAATAGGTTTTTCGTTTTGAGTGAGCAGAGTAATGAGACAAAATAC
TTTCCCTTTGGAATTTCTCGTGGAATACATCTTCGTCAGGGGAATGAACG
AATCTGGTCAGCTGGTAAAGAGATTTTtcttttagaattcttttattttt
agtatgttgtcaacaaaaataaatcaattatCAAAAACAGTATTATTACg
taaacttttgattggaaacGTATCAGCACAATCTAAGAACCTACATGGTA
TAGTTGCTGGCTGCTACCAAGCCCCAGGTGAAGATGGTGAAATTGTATTA
ACAGGGACGACTGAATCTCTTAACACTGAAACTGGTGGCAAACTTTTACA
AGCGCTTAACACTTCAAACTTTGATGGGAAACCTGGCAGCGTCCGAACAT
TCACGAATTTATCAGATAAATACCCTTTGCTGACTGTCTGTGGTTTGGGT
GAAGAGAATTTGGATATTGATGAGAACGAGTGTTTGGACGAGCGCAAGGA
AAATGTACGGATTGGGGCTGGAgCGGGCGCCAAAGAGTTGAAGAAATACA
AAGTGGACGTGATGTCATTGGATGATTGTGGAGATGCTCAATCTGCTGCC
GAAGGAGTTGGATTGAGTACTCATTCTTTCCAAGAATTCAAAtcgaaaaa
ggaaaatgaaaccTCTTGCACATTCAATGTCCTGTCCTCTGCccaaactt
cAGAGTTCGAACAAGGTTTGGCGATGGCAGAGGGTCAGAATTGGGCTCGT
GATTTGATGGAAACGCCTTCTAATTTCAAATATCCTGAACTGTTTGCTGA
CAAAGTTGTCCAACGATTCTCGGCGTTCAAGAATGTTGATGTCATCGTCA
GAGATGATGTCTGGGCGCGAGAGAAAGGAATGGATTGTTTCCTGTCAGTT
GGTAAAGGTTCCGATAAGAAACCCATGTTTGTGGAACTTCATTACAACCA
AAATGCAGATGAACAAAAGAAAGTGGTTCTTGTTGGAAAA

Run BLAST on NCBI

transcript from alignment at sc0000082:452522..456422+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008118 ID=TCONS_00008118|Name=TCONS_00008118|organism=Clytia hemisphaerica|type=transcript|length=3901bp|location=Sequence derived from alignment at sc0000082:452522..456422+ (Clytia hemisphaerica)
GTTTTATGTGAGCTCGATAATAAAAACATTCCAGTAAACTTCGTAAGGGA
AACCAACCTTAGGAGGGAATATTAATGAATTATCAAATTTATCCAGATGA
GTCCTGGGTACTTCTACCATGTCATATTTGATTCGAGAACACCTGTAAGA
TATAAAATAGGTTTTTCGTTTTGAGTGAGCAGAGTAATGAGACAAAATAC
TTTCCCTTTGGAATTTCTCGTGGAATACATCTTCGTCAGGGGAATGAACG
AATCTGGTCAGCTGGTAAAGAGATTTTtcttttagaattcttttattttt
agtatgttgtcaacaaaaataaatcaattatCAAAAACAGTATTATTACg
taaacttttgattggaaacGTATCAGCACAATCTAAGGTATGatttaaaa
taattatttttggaaaatcatttTGTAAACATAGCGTCGGCCTGGgtcta
ggtcccaggcaaaaattaagttccctctgagttttaagtccctCCAAAGA
TTCTTGAAATATTTGTGGTAGCCCCCAGGGCATCCGacacttttaaaagt
ttttttctgctAAAAAAGGGTTATTCAATGTGTTGCAGTTCGAAGGTTAT
GACAAAATGTTTTGCtcattttctataaaaaacttttgctcattttctat
aaaaaactttcaacttcatgagctttaatttgagtaattgaagaaTTGAA
GCCAACCATTAAGATAAAGTATTCAGCTGTCACGTTGAATGATGAGGTTT
CAGCTCCCCAAAGTACATTAGGTCccccaaatatttgaaacatcttTAGC
CCCCACCTTTTTGGGGCTTTTTGGAGGatgtaaccccccccccaactAGC
AGGGCTGACGCTATGAAAACTTTAGAATAATTACATCTCTTATATATGAA
TACATTATGATACATAATAAACTTTATAATATATTACAGAAATGATTTGA
TACAACTGTTTATTACCCAATACAATGAAGCtacatttttatcttttctt
acTTTAGAACCTACATGGTATAGTTGCTGGCTGCTACCAAGCCCCAGGTG
AAGATGGTGAAATTGTATTAACAGGGACGACTGAATCTCTTAACACTGAA
ACTGGTGGCAAACTTTTACAAGCGCTTAACACGTaatatgaatttatttt
cttgaCTAACAAAAAACTTACatccaaaaagtcaaaattacAGAATCAAT
GATGACATGCATTCGAGCACATTACATTACCGTTGATGTTTTCCTTGCAT
TTCAGTTCAAACTTTGATGGGAAACCTGGCAGCGTCCGAACATTCACGAA
TTTATCAGATGTATGAAACTTAttcttgtgaaatatttttcagtcAAATC
GTCGTTTTAGAAATTTATGCTCATTCTCTGTCATTCGCCATTATACTAAC
TGTAGAAATTTGTTTTCTGGTTTAATCGaatctgttttctttttttcacc
aGAAATACCCTTTGCTGACTGTCTGTGGTTTGGGTGAAGAGAATTTGGAT
ATTGATGAGAACGAGTGTTTGGACGAGCGCAAGGAAAATGTACGGATTGG
GGCTGGAggtatttcaattttcttttctttgtacatttttgtaaTGCTTT
GTATATCCCTGTGATCATTCCCTTTTGCTCTATAACTGGATGATTCAGGT
ATTTTTGTTTCAGGTAAGTGTTTGATTGGAGGGGAAGGTTTTTAAAGtct
attttcattaaaatcttcGAATAACCTTTCTTTCAGCGGGCGCCAAAGAG
TTGAAGAAATACAAAGTGGACGTGATGTCATTGGATGATTGTGGAGATGC
TCAATGTAATGTCTTCTTTCTTTTGATCAGTGATGGAAACTGTTTTATTT
GAGTTCTTCTCATTGCACTACATTACTGTCACTAATTTAGAGTTGAAGAA
TTCGAAACATTTTCAGCTCTTCCTTCTTTCCTTGTGTATTAACAAGATGT
GATTAATTTGTTCTTTCGTGATAGCTGCTGCCGAAGGAGTTGGATTGAGT
ACTCATTCTTTCCAAGAATTCAAAtcgaaaaaggaaaatgaaaccTCTTG
CACATTCAATGTCCTGTCCTCTGCGTGAGTATTTTACTTTTAATCCAAAC
TTAGGTATAAAGAAAAGGTTTGATCTTATAAACTTCTCACTTACTTTATG
ATGTCTTTATCTGAGAAATCATAGAGATAAAATCCAATGTCCATTGAatt
tatttcagccaaacttcAGAGTTCGAACAAGGTTTGGCGATGGCAGAGGG
TCAGAATTGGGCTCGTGATTTGATGGAAACGCCTTCTAATTTCAAATATC
CTGAACTGTTTGCTGACAAAGTTGTCCAACGATTCTCGGCGTTCAAGAAT
GTTGATGTCATCGTCAGGTGAATAAATTATTGTGAATGATTTTGATCTTT
GAAAATGAACGCATTTTTCCGACTCCAGGTAGGTTTGTCGTAACAAGAAC
TTTtacatataaaatacaaaaacctAATGAAACAAatagaagaagaaaca
aaatcattaattttGAGTTGACCAATAATAGTAcatgttttataagaata
tgctaagaactGTCACCATcgtatatttttacaaccgaACCGTTAATAAG
AATCTCGAGACTTCACAAAATtgtcatacttttttttttgggtgGGGGGT
ATGTATATAGATATAGGCAGGGTTTAGATTCTAAACTTAGAATGTCGTTA
AGAATATTATGGGTTGATTTTTATCCTAAAGttgagaatatccatgatga
aatggaaaaaaataccATTCTTATAACAAAAGCGTTTAGGGTTTAAGAAT
GTCCCTGAGCCATTGGCTCCTTGCAAAGTATCACCCTGTATTAGCTGTTT
GGACCATCTTGCAAGCAGCgggctttcattttctttcattattttcCAGA
GATGATGTCTGGGCGCGAGAGAAAGGAATGGATTGTTTCCTGTCAGTTGG
TAAAGGTTCCGATAAGAAACCCATGTTTGTGGAACTTCATTACAACCAAA
ATGCAGATGAACAAAAGAAAGTGGTTCTTGTTGGAAAAGGTAATTCATTT
ATCTACATCAACAAACATCCGGTTGTATGAAGTAGTTAGACCCCGCTGGC
TTGAATGATTGATGCANAATTGGGCTCGTGATTTGATGGAAACGCCTTCT
AATTTCAAATATCCTGAACTGTTTGCTGACAAAGTTGTTCAACGATTCTC
GGCGTTCAAGAATGTTGATGTCATCGTCAGGTGAATAAATTATTGTGAAT
GATTTTGATCTTTGAAAATGAACGCATTTTTCCGACTCCAGGTAGGTTTG
TCGTAACAAGAACTTTtacatataaaatacaaaaacctAATGAAACAAat
agaagaagaaacaaaatcattaattttGAGTTGACCAATAATAGTAcatg
ttttataagaatatgctaagaactGTCACCATcgtatatttttacaaccg
aACCGTTAATAAGAATCTCGAGACTTCACAAAATtgtcatactttttttt
ttgggtgGGGGGTATGTATATAGATATAGGCAGGGTTTAGATTCTAAACT
TAGAATGTCGTTAAGAATATTATGGGTTGATTTTTATCCTAAAGttgaga
atatccatgatgaaatggaaaaaaataccATTCTTATAACAAAAGCGTTT
AGGGTTTAAGAATGTCCCTGAGCCATTGGCTCCTTGCAAAGTATCACCCT
GTATTAGCTGTTTGGACCATCTTGCAAGCAGcggtttttcattttctttc
attattttcCAGAGATGATGTCTGGGCGCGAGAGAAAGGAATGGATTGTT
TCCTGTCAGTTGGTAAAGGTTCCGATAAGAAACCCATGTTTGTGGAACTT
CATTACAACCAAAATGCAGATGAACAAAAGAAAGTGGTTCTTGTTGGAAA
A

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004579	XLOC_004579	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000082	supercontig	sc0000082:452522..456422 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.094598	0.0746557	0.0244208	0.0119272	4.23437	4.02023	5.01578	4.98919	2.46477	1.46316	1.71843	3.31847	3.3244	4.2102	0.0245815	0.474897	3.08465	1.11847	0.016698	0.00882788	0.0185538	0.0250099	0.0370995	1.42342	7.4611	7.00932	0.735288	0.0191231	0.0393023	0.0447446

Blast

[Close]

BLAST of TCONS_00008118 vs. Swiss-Prot (Human)
Match: AMPL (Cytosol aminopeptidase OS=Homo sapiens GN=LAP3 PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 7.938e-44
Identity = 94/251 (37.45%), Postives = 136/251 (54.18%), Query Frame = 1

Query:  397 GIVAGCYQAPGEDGEIVLTGTTESLNTETGGKLLQALNTSNFDGKPGSVRTFTNLSDKYPLLTVCGLGEENLDIDENECLDERKENVRIGAGAGAKELKKYKVDVMSLDDCGDAQSAAEGVGLSTHSFQEFKSKKENETSCTFNVLSSAQTSEFEQGLAMAEGQNWARDLMETPSNFKYPELFADKVVQRF-SAFKNVDVIVRDDVWAREKGMDCFLSVGKGSDKKPMFVELHY--NQNADEQKKVVLVGK 1140
            G+V G Y    ED     T   E+ +    GKL + LN S    K G  RTF  L   +P + + GLG++   IDE E   E KEN+R    AG ++++  ++  + +D CGDAQ+AAEG  L  + + + K KK+   S    +  S     +++G+  A GQN AR LMETP+N   P  FA+ + +   SA    +V +R   W  E+ M  FLSV KGSD+ P+F+E+HY  + NA+E   +V VGK
Sbjct:   35 GLVLGIYSKEKEDDVPQFTSAGENFDKLLAGKLRETLNISGPPLKAGKTRTFYGLHQDFPSVVLVGLGKKAAGIDEQENWHEGKENIRAAVAAGCRQIQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSA--KLYGSGDQEAWQKGVLFASGQNLARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWIEEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANE-PPLVFVGK 282

The following BLAST results are available for this feature:

BLAST of TCONS_00008118 vs. Swiss-Prot (Human)

BLAST of TCONS_00008118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AMPL	7.938e-44	37.45	Cytosol aminopeptidase OS=Homo sapiens GN=LAP3 PE=...	[more]

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TCONS_00008118 (transcript) - C. hemisphaerica