XLOC_000580 (gene) - C. hemisphaerica

Overview
NameXLOC_000580
Unique NameXLOC_000580
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000007:477953..481297+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000580 ID=XLOC_000580|Name=XLOC_000580|organism=Clytia hemisphaerica|type=gene|length=3345bp|location=Sequence derived from alignment at sc0000007:477953..481297+ (Clytia hemisphaerica)
TATCAGATGCGGTTTTGGCAAGTAAAAATGAATATTGTAATACACATTTG
GGCATAGGTTACAGCTATGAAGTATACCCCAGATTCTCTTTAATTTTTGG
TAAGACTAAGGGTTTTAGAGCGAAACTAGAGTCATTAAAAAGCGATCAAA
TCTTTATATAACAGATCGTTTAGAGGACCCatattttagtttttcatttc
tttcactGAAGTTATGATAATATTGGAAGATGTTGGAAGAAGGGTTGGCT
TTAGGAGAAGTGTTTTCAGTTTTGTTATTCTCATCATTCATATCAGTAGC
AGAAGaacaaaatcttttcttttttcttcNTAGAGCGAAAATAGAGTCAT
TAAAAAGCGATCAAATCTTTATATAATAGATCGTTTAGAGGACCCatatt
ttagtttttcatttctttcactGAAGTTGTAAATGATATTTGAAGATGTT
GGAAGAGAGGTTGGCTTTAGGAGaagtgttttcaatttttttattctcaT
CATTCATATCACTAGCAGAAGAAcaaaatcttttctttcttctttttatg
gATGAAAGAACATAAGAAAGGATGAGTAGATAAGAAGATCACATTTTTCA
TGGAGTTTCATTGATTTTTATACTACACGGGAAATCTTTCGTTTTTCGGC
CCAAAAAAGTAATCTGTGGTTAAAGAAAAGATGGTACGGTTATTTTCTTC
AACAATCGAATCtttaaaagtgtttaaaaacGTTTTGAAGCAGCGTGTGC
TTTTCCCATTTTTCACAAATTGAAGGAAATTGTTTATCTGTAGCTCGTTT
CCCGCTCTATGACCTTAACATTGTgtgtgaaagaaaattttttcttggtG
GCATCCTGCTCGACAAAACTCAATTTAGGGACTATTTACGGCCCAAAAAA
TCACGTATTTCAATCGTCATCTCCGCTTGCCTTCAAAAGCCCCAACTGTG
CCattattcaaaacttttttggttttaattttgataTGATAATAATAAAG
TAACAACGATCTCGCTCTCTCATTCTTTCATTGAATGCAAATCAAACGCC
GATATCAAAAGACAAATTTGACATGGCTTGTGAATCTAGTTATGTTCCAT
AGTATTAATATCTAGACGTTAATTGATAAGAaacaaatttcttgattttt
tactCGGGGTGTAAAATCAACAAGTGATCGACTTTCCGCAAAATCATTTC
TGAGTGAGTTGATATGACAATAATTTGTTTTATATTAAAATCTACTAAGT
CATGTAGTGAAGTGGTTAAAAGTGTATAATTGAAAAGGATATATCAGACA
TCAAAAGTGACAATTACTACTCTAAAACAAACTTTACAATCGATTAAACt
tcaataaaatcataaaaagtcTAAAAGTCATTTTTCTGTTCTGTCTAACT
TTTAGGTGTTTATTCGACGAGGAAACAGAGAAACAATGGCGGATCACAAC
TCAACGGCGGTAGATCTGGCCTTCTCGTTAGAAACCAGTCAAATATGTGG
CGCCTTTCTACTCATCGTTTCGTTGTTCGGTCTCATGGTGTACGTTCTAT
TCATGTTCGTCGTGTTCACACGTCCTAAGTTTAAAGACAAGACTTATTTT
ACGATCGCTGGATGTCTCGGTATCGCAGATTGTATGTGTCTCTTCCTAAT
GATTGGATACGCTTCCCCTTGTCTATTTTACCGAACAAGTCTAAGCAACA
GTCTCGCGTTGGGTGGCGTATTGAACATTGGATGGTTCAGCGGACTACCA
CTACTCATCTTTCTAGCTGGTGATCGATATTTGTGCATCTGTAACAAAGA
TTTGTACAGCAGGTTTTACAAGAAACGTTTGACGAACATGTACTGTATAG
GATGTTGGGTGTTTGGTATTGCTTATTCCATCCCCTCCTTCTTCCCATGC
TGTTCTCTACATTTCGATTACACCTTGATGTCATGGGGCTGGAGTATAGA
CTTCGATGGCGCCAAAACATTAGCTTTGGGTGAAATAACCATGGTAGTCA
TCATCACATCAATCACTTACTTCCTCAACGGCCTCGttttcaggtaaaaa
aaattatgttacgTTTTAAACTACGAATAGTTTCTTTCATCTGATTAAAT
ACCATCAGCCAGTCAAATAATAACACTTTCTCTTCACCAAAACATATTCC
GAGGTTATTGTTCGTTTATGGTTGCAAGGGATCGAAAAGTTCCCTTGACA
AATCAGTCTGATATGGAACTCCAGAATTCCATTTAATCCGTGTTTTTTCC
TCCAGAAGTAGTTCaaacatattctttttgtttacgTTTCAGAGCACTTC
GAGAAGCTCAACGTAACACGTCTTTAGACGCCGTACACGAGCAGCGTAAG
AGCGCACGTGAACGTAAAGTGTTTATCCAATTCTTCATCACCACTATTTG
GTTGGTGGTGTTTGATGTACCCTTCATCACGATCGGTTACATTGAGAACC
CGTCACACTGGTTGGGTTATTTCGTCACGTTAGCTTACACCATCAATTGC
TCCATCAATGGATGGGTTTATTGCTTCATGAACAAAACTGTCAAACGTGA
GATCCGAGAGATCTGTCGGCGTGGATATCGGATACGTGCAGATACGGAAA
TGAGTGATCAAGGTCGCAAAACTATCGTTAGACAACGAAAGGATACTAAA
AAATCTGAGGTGGAAAATTTCCGTTTAAAACAAGGCAACACTTCATCCGC
ATAGGGTGGATACCATCCTTAATTAAGAGAGGGTTTTGAAAAACTTGTGA
ATTTATTTGTATATTGATTTTAGCATTGAACACATCTTTTTATTGTTTAG
TtactttttttacaaattgTATATATGCGTGCGTGTGTTAAAATGCAAGG
TTTGTCAAAAACTGtttattggaaattttcatGATATCTAAAAGTCATGT
TGGTGTTTGGAGTGACCGTTTGAGAGTCTCTTTCTCAGTCTTTCTGGTAG
GCTAACCTCAGAAATTTGCATTCGATTTCTCTTCCCTCCAATTAATAAGG
AAATTGCCTGGATTTCTCTCGTTTATAAAACTCTTGAAACAAATATCACC
TAACaacatttttgaccatttttcttgTGTTATTAATTGAATTTTTCGTT
GTCATTGGCAACGAAGATGGTAGAATGTTCGAATAATGTAATTGTGGTAC
TTCCCAATAAAAAGTTGATGTTTGAGTGATGTCGTGTGTCATTTGCACCA
ATTCACCAGGCGTGGGTAAAGTGAGGTAATATTTAGCTGTTGGATGGTTT
ATTGAATGATAACTTTCATAAGTGTTGTAGAACTCTGGTGTAAAACACTC
CACAAAGACACAATCACGACCTTCTGTCTCCTGAAAATATATAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000996TCONS_00000996Clytia hemisphaericatranscript
TCONS_00000997TCONS_00000997Clytia hemisphaericatranscript
TCONS_00000998TCONS_00000998Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000996-proteinTCONS_00000996-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:477953..481297 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.32	0.57	0.67	0.97	1.6	1.06	0.02	0.2	0.08	0.02	0.22	0.14	0.13	0.14	0.41	0	0.04	0.08	0.06	0.31	0	0	0	0