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TCONS_00000996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000996
Unique NameTCONS_00000996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000996 ID=TCONS_00000996|Name=TCONS_00000996|organism=Clytia hemisphaerica|type=transcript|length=1790bp
TATCAGATGCGGTTTTGGCAAGTAAAAATGAATATTGTAATACACATTTG
GGCATAGGTTACAGCTATGAAGTATACCCCAGATTCTCTTTAATTTTTGG
TGTTTATTCGACGAGGAAACAGAGAAACAATGGCGGATCACAACTCAACG
GCGGTAGATCTGGCCTTCTCGTTAGAAACCAGTCAAATATGTGGCGCCTT
TCTACTCATCGTTTCGTTGTTCGGTCTCATGGTGTACGTTCTATTCATGT
TCGTCGTGTTCACACGTCCTAAGTTTAAAGACAAGACTTATTTTACGATC
GCTGGATGTCTCGGTATCGCAGATTGTATGTGTCTCTTCCTAATGATTGG
ATACGCTTCCCCTTGTCTATTTTACCGAACAAGTCTAAGCAACAGTCTCG
CGTTGGGTGGCGTATTGAACATTGGATGGTTCAGCGGACTACCACTACTC
ATCTTTCTAGCTGGTGATCGATATTTGTGCATCTGTAACAAAGATTTGTA
CAGCAGGTTTTACAAGAAACGTTTGACGAACATGTACTGTATAGGATGTT
GGGTGTTTGGTATTGCTTATTCCATCCCCTCCTTCTTCCCATGCTGTTCT
CTACATTTCGATTACACCTTGATGTCATGGGGCTGGAGTATAGACTTCGA
TGGCGCCAAAACATTAGCTTTGGGTGAAATAACCATGGTAGTCATCATCA
CATCAATCACTTACTTCCTCAACGGCCTCGttttcagAGCACTTCGAGAA
GCTCAACGTAACACGTCTTTAGACGCCGTACACGAGCAGCGTAAGAGCGC
ACGTGAACGTAAAGTGTTTATCCAATTCTTCATCACCACTATTTGGTTGG
TGGTGTTTGATGTACCCTTCATCACGATCGGTTACATTGAGAACCCGTCA
CACTGGTTGGGTTATTTCGTCACGTTAGCTTACACCATCAATTGCTCCAT
CAATGGATGGGTTTATTGCTTCATGAACAAAACTGTCAAACGTGAGATCC
GAGAGATCTGTCGGCGTGGATATCGGATACGTGCAGATACGGAAATGAGT
GATCAAGGTCGCAAAACTATCGTTAGACAACGAAAGGATACTAAAAAATC
TGAGGTGGAAAATTTCCGTTTAAAACAAGGCAACACTTCATCCGCATAGG
GTGGATACCATCCTTAATTAAGAGAGGGTTTTGAAAAACTTGTGAATTTA
TTTGTATATTGATTTTAGCATTGAACACATCTTTTTATTGTTTAGTtact
ttttttacaaattgTATATATGCGTGCGTGTGTTAAAATGCAAGGTTTGT
CAAAAACTGtttattggaaattttcatGATATCTAAAAGTCATGTTGGTG
TTTGGAGTGACCGTTTGAGAGTCTCTTTCTCAGTCTTTCTGGTAGGCTAA
CCTCAGAAATTTGCATTCGATTTCTCTTCCCTCCAATTAATAAGGAAATT
GCCTGGATTTCTCTCGTTTATAAAACTCTTGAAACAAATATCACCTAACa
acatttttgaccatttttcttgTGTTATTAATTGAATTTTTCGTTGTCAT
TGGCAACGAAGATGGTAGAATGTTCGAATAATGTAATTGTGGTACTTCCC
AATAAAAAGTTGATGTTTGAGTGATGTCGTGTGTCATTTGCACCAATTCA
CCAGGCGTGGGTAAAGTGAGGTAATATTTAGCTGTTGGATGGTTTATTGA
ATGATAACTTTCATAAGTGTTGTAGAACTCTGGTGTAAAACACTCCACAA
AGACACAATCACGACCTTCTGTCTCCTGAAAATATATAAG
Run BLAST on NCBI

protein sequence of TCONS_00000996-protein

>TCONS_00000996-protein ID=TCONS_00000996-protein|Name=TCONS_00000996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MADHNSTAVDLAFSLETSQICGAFLLIVSLFGLMVYVLFMFVVFTRPKFK
DKTYFTIAGCLGIADCMCLFLMIGYASPCLFYRTSLSNSLALGGVLNIGW
FSGLPLLIFLAGDRYLCICNKDLYSRFYKKRLTNMYCIGCWVFGIAYSIP
SFFPCCSLHFDYTLMSWGWSIDFDGAKTLALGEITMVVIITSITYFLNGL
VFRALREAQRNTSLDAVHEQRKSARERKVFIQFFITTIWLVVFDVPFITI
GYIENPSHWLGYFVTLAYTINCSINGWVYCFMNKTVKREIREICRRGYRI
RADTEMSDQGRKTIVRQRKDTKKSEVENFRLKQGNTSSA
Run BLAST on NCBI

transcript from alignment at sc0000007:477953..481297+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000996 ID=TCONS_00000996|Name=TCONS_00000996|organism=Clytia hemisphaerica|type=transcript|length=3345bp|location=Sequence derived from alignment at sc0000007:477953..481297+ (Clytia hemisphaerica)
TATCAGATGCGGTTTTGGCAAGTAAAAATGAATATTGTAATACACATTTG GGCATAGGTTACAGCTATGAAGTATACCCCAGATTCTCTTTAATTTTTGG TAAGACTAAGGGTTTTAGAGCGAAACTAGAGTCATTAAAAAGCGATCAAA TCTTTATATAACAGATCGTTTAGAGGACCCatattttagtttttcatttc tttcactGAAGTTATGATAATATTGGAAGATGTTGGAAGAAGGGTTGGCT TTAGGAGAAGTGTTTTCAGTTTTGTTATTCTCATCATTCATATCAGTAGC AGAAGaacaaaatcttttcttttttcttcNTAGAGCGAAAATAGAGTCAT TAAAAAGCGATCAAATCTTTATATAATAGATCGTTTAGAGGACCCatatt ttagtttttcatttctttcactGAAGTTGTAAATGATATTTGAAGATGTT GGAAGAGAGGTTGGCTTTAGGAGaagtgttttcaatttttttattctcaT CATTCATATCACTAGCAGAAGAAcaaaatcttttctttcttctttttatg gATGAAAGAACATAAGAAAGGATGAGTAGATAAGAAGATCACATTTTTCA TGGAGTTTCATTGATTTTTATACTACACGGGAAATCTTTCGTTTTTCGGC CCAAAAAAGTAATCTGTGGTTAAAGAAAAGATGGTACGGTTATTTTCTTC AACAATCGAATCtttaaaagtgtttaaaaacGTTTTGAAGCAGCGTGTGC TTTTCCCATTTTTCACAAATTGAAGGAAATTGTTTATCTGTAGCTCGTTT CCCGCTCTATGACCTTAACATTGTgtgtgaaagaaaattttttcttggtG GCATCCTGCTCGACAAAACTCAATTTAGGGACTATTTACGGCCCAAAAAA TCACGTATTTCAATCGTCATCTCCGCTTGCCTTCAAAAGCCCCAACTGTG CCattattcaaaacttttttggttttaattttgataTGATAATAATAAAG TAACAACGATCTCGCTCTCTCATTCTTTCATTGAATGCAAATCAAACGCC GATATCAAAAGACAAATTTGACATGGCTTGTGAATCTAGTTATGTTCCAT AGTATTAATATCTAGACGTTAATTGATAAGAaacaaatttcttgattttt tactCGGGGTGTAAAATCAACAAGTGATCGACTTTCCGCAAAATCATTTC TGAGTGAGTTGATATGACAATAATTTGTTTTATATTAAAATCTACTAAGT CATGTAGTGAAGTGGTTAAAAGTGTATAATTGAAAAGGATATATCAGACA TCAAAAGTGACAATTACTACTCTAAAACAAACTTTACAATCGATTAAACt tcaataaaatcataaaaagtcTAAAAGTCATTTTTCTGTTCTGTCTAACT TTTAGGTGTTTATTCGACGAGGAAACAGAGAAACAATGGCGGATCACAAC TCAACGGCGGTAGATCTGGCCTTCTCGTTAGAAACCAGTCAAATATGTGG CGCCTTTCTACTCATCGTTTCGTTGTTCGGTCTCATGGTGTACGTTCTAT TCATGTTCGTCGTGTTCACACGTCCTAAGTTTAAAGACAAGACTTATTTT ACGATCGCTGGATGTCTCGGTATCGCAGATTGTATGTGTCTCTTCCTAAT GATTGGATACGCTTCCCCTTGTCTATTTTACCGAACAAGTCTAAGCAACA GTCTCGCGTTGGGTGGCGTATTGAACATTGGATGGTTCAGCGGACTACCA CTACTCATCTTTCTAGCTGGTGATCGATATTTGTGCATCTGTAACAAAGA TTTGTACAGCAGGTTTTACAAGAAACGTTTGACGAACATGTACTGTATAG GATGTTGGGTGTTTGGTATTGCTTATTCCATCCCCTCCTTCTTCCCATGC TGTTCTCTACATTTCGATTACACCTTGATGTCATGGGGCTGGAGTATAGA CTTCGATGGCGCCAAAACATTAGCTTTGGGTGAAATAACCATGGTAGTCA TCATCACATCAATCACTTACTTCCTCAACGGCCTCGttttcaggtaaaaa aaattatgttacgTTTTAAACTACGAATAGTTTCTTTCATCTGATTAAAT ACCATCAGCCAGTCAAATAATAACACTTTCTCTTCACCAAAACATATTCC GAGGTTATTGTTCGTTTATGGTTGCAAGGGATCGAAAAGTTCCCTTGACA AATCAGTCTGATATGGAACTCCAGAATTCCATTTAATCCGTGTTTTTTCC TCCAGAAGTAGTTCaaacatattctttttgtttacgTTTCAGAGCACTTC GAGAAGCTCAACGTAACACGTCTTTAGACGCCGTACACGAGCAGCGTAAG AGCGCACGTGAACGTAAAGTGTTTATCCAATTCTTCATCACCACTATTTG GTTGGTGGTGTTTGATGTACCCTTCATCACGATCGGTTACATTGAGAACC CGTCACACTGGTTGGGTTATTTCGTCACGTTAGCTTACACCATCAATTGC TCCATCAATGGATGGGTTTATTGCTTCATGAACAAAACTGTCAAACGTGA GATCCGAGAGATCTGTCGGCGTGGATATCGGATACGTGCAGATACGGAAA TGAGTGATCAAGGTCGCAAAACTATCGTTAGACAACGAAAGGATACTAAA AAATCTGAGGTGGAAAATTTCCGTTTAAAACAAGGCAACACTTCATCCGC ATAGGGTGGATACCATCCTTAATTAAGAGAGGGTTTTGAAAAACTTGTGA ATTTATTTGTATATTGATTTTAGCATTGAACACATCTTTTTATTGTTTAG TtactttttttacaaattgTATATATGCGTGCGTGTGTTAAAATGCAAGG TTTGTCAAAAACTGtttattggaaattttcatGATATCTAAAAGTCATGT TGGTGTTTGGAGTGACCGTTTGAGAGTCTCTTTCTCAGTCTTTCTGGTAG GCTAACCTCAGAAATTTGCATTCGATTTCTCTTCCCTCCAATTAATAAGG AAATTGCCTGGATTTCTCTCGTTTATAAAACTCTTGAAACAAATATCACC TAACaacatttttgaccatttttcttgTGTTATTAATTGAATTTTTCGTT GTCATTGGCAACGAAGATGGTAGAATGTTCGAATAATGTAATTGTGGTAC TTCCCAATAAAAAGTTGATGTTTGAGTGATGTCGTGTGTCATTTGCACCA ATTCACCAGGCGTGGGTAAAGTGAGGTAATATTTAGCTGTTGGATGGTTT ATTGAATGATAACTTTCATAAGTGTTGTAGAACTCTGGTGTAAAACACTC CACAAAGACACAATCACGACCTTCTGTCTCCTGAAAATATATAAG

Coding sequence (CDS) from alignment at sc0000007:477953..481297+

>TCONS_00000996 ID=TCONS_00000996|Name=TCONS_00000996|organism=Clytia hemisphaerica|type=CDS|length=2040bp|location=Sequence derived from alignment at sc0000007:477953..481297+ (Clytia hemisphaerica)
ATGGCGGATCACAACTCAACGGCGGTAGATCTGGCCTTCTCGTTAGAAAC
CAGTCAAATATGTGGCGCCTTTCTACTCATCGTTTCGTTGTTCGGTCTCA
TGGTGTACGTTCTATTCATGTTCGTCGTGTTCACACGTCCTAAGTTTAAA
GACAAGACTTATTTTACGATCGCTGGATGTCTCGGTATCGCAGATTGTAT
GTGTCTCTTCCTAATGATTGGATACGCTTCCCCTTGTCTATTTTACCGAA
CAAGTCTAAGCAACAGTCTCGCGTTGGGTGGCGTATTGAACATTGGATGG
TTCAGCGGACTACCACTACTCATCTTTCTAGCTGGTGATCGATATTTGTG
CATCTGTAACAAAGATTTGTACAGCAGGTTTTACAAGAAACGTTTGACGA
ACATGTACTGTATAGGATGTTGGGTGTTTGGTATTGCTTATTCCATCCCC
TCCTTCTTCCCATGCTGTTCTCTACATTTCGATTACACCTTGATGTCATG
GGGCTGGAGTATAGACTTCGATGGCGCCAAAACATTAGCTTTGGGTGAAA
TAACCATGGTAGTCATCATCACATCAATCACTTACTTCCTCAACGGCCTC
GttttcagAGCACTTCGAGAAGCTCAACGTAACACGTCTTTAGACGCCGT
ACACGAGCAGCGTAAGAGCGCACGTGAACGTAAAGTGTTTATCCAATTCT
TCATCACCACTATTTGGTTGGTGGTGTTTGATGTACCCTTCATCACGATC
GGTTACATTGAGAACCCGTCACACTGGTTGGGTTATTTCGTCACGTTAGC
TTACACCATCAATTGCTCCATCAATGGATGGGTTTATTGCTTCATGAACA
AAACTGTCAAACGTGAGATCCGAGAGATCTGTCGGCGTGGATATCGGATA
CGTGCAGATACGGAAATGAGTGATCAAGGTCGCAAAACTATCGTTAGACA
ACGAAAGGATACTAAAAAATCTGAGGTGGAAAATTTCCGTTTAAAACAAG
GCAACACTTCATCCGCATAGATGGCGGATCACAACTCAACGGCGGTAGAT
CTGGCCTTCTCGTTAGAAACCAGTCAAATATGTGGCGCCTTTCTACTCAT
CGTTTCGTTGTTCGGTCTCATGGTGTACGTTCTATTCATGTTCGTCGTGT
TCACACGTCCTAAGTTTAAAGACAAGACTTATTTTACGATCGCTGGATGT
CTCGGTATCGCAGATTGTATGTGTCTCTTCCTAATGATTGGATACGCTTC
CCCTTGTCTATTTTACCGAACAAGTCTAAGCAACAGTCTCGCGTTGGGTG
GCGTATTGAACATTGGATGGTTCAGCGGACTACCACTACTCATCTTTCTA
GCTGGTGATCGATATTTGTGCATCTGTAACAAAGATTTGTACAGCAGGTT
TTACAAGAAACGTTTGACGAACATGTACTGTATAGGATGTTGGGTGTTTG
GTATTGCTTATTCCATCCCCTCCTTCTTCCCATGCTGTTCTCTACATTTC
GATTACACCTTGATGTCATGGGGCTGGAGTATAGACTTCGATGGCGCCAA
AACATTAGCTTTGGGTGAAATAACCATGGTAGTCATCATCACATCAATCA
CTTACTTCCTCAACGGCCTCGttttcagAGCACTTCGAGAAGCTCAACGT
AACACGTCTTTAGACGCCGTACACGAGCAGCGTAAGAGCGCACGTGAACG
TAAAGTGTTTATCCAATTCTTCATCACCACTATTTGGTTGGTGGTGTTTG
ATGTACCCTTCATCACGATCGGTTACATTGAGAACCCGTCACACTGGTTG
GGTTATTTCGTCACGTTAGCTTACACCATCAATTGCTCCATCAATGGATG
GGTTTATTGCTTCATGAACAAAACTGTCAAACGTGAGATCCGAGAGATCT
GTCGGCGTGGATATCGGATACGTGCAGATACGGAAATGAGTGATCAAGGT
CGCAAAACTATCGTTAGACAACGAAAGGATACTAAAAAATCTGAGGTGGA
AAATTTCCGTTTAAAACAAGGCAACACTTCATCCGCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000580XLOC_000580Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000996-proteinTCONS_00000996-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000996-exon-sc0000007-1491911889:477953..478051TCONS_00000996-exon-sc0000007-1491911889:477953..478051Clytia hemisphaericaexon
TCONS_00000996-exon-sc0000007-1510915933:477953..478051TCONS_00000996-exon-sc0000007-1510915933:477953..478051Clytia hemisphaericaexon
TCONS_00000996-exon-sc0000007-1575043694:477953..478051TCONS_00000996-exon-sc0000007-1575043694:477953..478051Clytia hemisphaericaexon
TCONS_00000996-exon-sc0000007-1491911889:479358..479995TCONS_00000996-exon-sc0000007-1491911889:479358..479995Clytia hemisphaericaexon
TCONS_00000996-exon-sc0000007-1510915933:479358..479995TCONS_00000996-exon-sc0000007-1510915933:479358..479995Clytia hemisphaericaexon
TCONS_00000996-exon-sc0000007-1575043694:479358..479995TCONS_00000996-exon-sc0000007-1575043694:479358..479995Clytia hemisphaericaexon
TCONS_00000996-exon-sc0000007-1491911889:480245..481297TCONS_00000996-exon-sc0000007-1491911889:480245..481297Clytia hemisphaericaexon
TCONS_00000996-exon-sc0000007-1510915933:480245..481297TCONS_00000996-exon-sc0000007-1510915933:480245..481297Clytia hemisphaericaexon
TCONS_00000996-exon-sc0000007-1575043694:480245..481297TCONS_00000996-exon-sc0000007-1575043694:480245..481297Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:477953..481297 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.319371 0 0.530336 0.738471 1.2782 0.516218 0.0246835 0.20189 0.0795623 0.0159952 0.224424 0 0.133188 0 0.406496 0 0.0350735 0.0824227 0.0571732 0 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR0194307TM_GPCR_serpentine_rcpt_Srx
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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