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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000998 ID=TCONS_00000998|Name=TCONS_00000998|organism=Clytia hemisphaerica|type=transcript|length=1910bp
CGCAAAATCATTTCTGAGTGAGTTGATATGACAATAATTTGTTTTATATT
AAAATCTACTAAGTCATGTAGTGAAGTGGTTAAAAGTGTATAATTGAAAA
GGATATATCAGACATCAAAAGTGACAATTACTACTCTAAAACAAACTTTA
CAATCGATTAAACttcaataaaatcataaaaagtcTAAAAGTCATTTTTC
TGTTCTGTCTAACTTTTAGGTGTTTATTCGACGAGGAAACAGAGAAACAA
TGGCGGATCACAACTCAACGGCGGTAGATCTGGCCTTCTCGTTAGAAACC
AGTCAAATATGTGGCGCCTTTCTACTCATCGTTTCGTTGTTCGGTCTCAT
GGTGTACGTTCTATTCATGTTCGTCGTGTTCACACGTCCTAAGTTTAAAG
ACAAGACTTATTTTACGATCGCTGGATGTCTCGGTATCGCAGATTGTATG
TGTCTCTTCCTAATGATTGGATACGCTTCCCCTTGTCTATTTTACCGAAC
AAGTCTAAGCAACAGTCTCGCGTTGGGTGGCGTATTGAACATTGGATGGT
TCAGCGGACTACCACTACTCATCTTTCTAGCTGGTGATCGATATTTGTGC
ATCTGTAACAAAGATTTGTACAGCAGGTTTTACAAGAAACGTTTGACGAA
CATGTACTGTATAGGATGTTGGGTGTTTGGTATTGCTTATTCCATCCCCT
CCTTCTTCCCATGCTGTTCTCTACATTTCGATTACACCTTGATGTCATGG
GGCTGGAGTATAGACTTCGATGGCGCCAAAACATTAGCTTTGGGTGAAAT
AACCATGGTAGTCATCATCACATCAATCACTTACTTCCTCAACGGCCTCG
ttttcagAGCACTTCGAGAAGCTCAACGTAACACGTCTTTAGACGCCGTA
CACGAGCAGCGTAAGAGCGCACGTGAACGTAAAGTGTTTATCCAATTCTT
CATCACCACTATTTGGTTGGTGGTGTTTGATGTACCCTTCATCACGATCG
GTTACATTGAGAACCCGTCACACTGGTTGGGTTATTTCGTCACGTTAGCT
TACACCATCAATTGCTCCATCAATGGATGGGTTTATTGCTTCATGAACAA
AACTGTCAAACGTGAGATCCGAGAGATCTGTCGGCGTGGATATCGGATAC
GTGCAGATACGGAAATGAGTGATCAAGGTCGCAAAACTATCGTTAGACAA
CGAAAGGATACTAAAAAATCTGAGGTGGAAAATTTCCGTTTAAAACAAGG
CAACACTTCATCCGCATAGGGTGGATACCATCCTTAATTAAGAGAGGGTT
TTGAAAAACTTGTGAATTTATTTGTATATTGATTTTAGCATTGAACACAT
CTTTTTATTGTTTAGTtactttttttacaaattgTATATATGCGTGCGTG
TGTTAAAATGCAAGGTTTGTCAAAAACTGtttattggaaattttcatGAT
ATCTAAAAGTCATGTTGGTGTTTGGAGTGACCGTTTGAGAGTCTCTTTCT
CAGTCTTTCTGGTAGGCTAACCTCAGAAATTTGCATTCGATTTCTCTTCC
CTCCAATTAATAAGGAAATTGCCTGGATTTCTCTCGTTTATAAAACTCTT
GAAACAAATATCACCTAACaacatttttgaccatttttcttgTGTTATTA
ATTGAATTTTTCGTTGTCATTGGCAACGAAGATGGTAGAATGTTCGAATA
ATGTAATTGTGGTACTTCCCAATAAAAAGTTGATGTTTGAGTGATGTCGT
GTGTCATTTGCACCAATTCACCAGGCGTGGGTAAAGTGAGGTAATATTTA
GCTGTTGGATGGTTTATTGAATGATAACTTTCATAAGTGTTGTAGAACTC
TGGTGTAAAACACTCCACAAAGACACAATCACGACCTTCTGTCTCCTGAA
AATATATAAG Run BLAST on NCBI transcript from alignment at sc0000007:479139..481297+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000998 ID=TCONS_00000998|Name=TCONS_00000998|organism=Clytia hemisphaerica|type=transcript|length=2159bp|location=Sequence derived from alignment at sc0000007:479139..481297+ (Clytia hemisphaerica)
CGCAAAATCATTTCTGAGTGAGTTGATATGACAATAATTTGTTTTATATT
AAAATCTACTAAGTCATGTAGTGAAGTGGTTAAAAGTGTATAATTGAAAA
GGATATATCAGACATCAAAAGTGACAATTACTACTCTAAAACAAACTTTA
CAATCGATTAAACttcaataaaatcataaaaagtcTAAAAGTCATTTTTC
TGTTCTGTCTAACTTTTAGGTGTTTATTCGACGAGGAAACAGAGAAACAA
TGGCGGATCACAACTCAACGGCGGTAGATCTGGCCTTCTCGTTAGAAACC
AGTCAAATATGTGGCGCCTTTCTACTCATCGTTTCGTTGTTCGGTCTCAT
GGTGTACGTTCTATTCATGTTCGTCGTGTTCACACGTCCTAAGTTTAAAG
ACAAGACTTATTTTACGATCGCTGGATGTCTCGGTATCGCAGATTGTATG
TGTCTCTTCCTAATGATTGGATACGCTTCCCCTTGTCTATTTTACCGAAC
AAGTCTAAGCAACAGTCTCGCGTTGGGTGGCGTATTGAACATTGGATGGT
TCAGCGGACTACCACTACTCATCTTTCTAGCTGGTGATCGATATTTGTGC
ATCTGTAACAAAGATTTGTACAGCAGGTTTTACAAGAAACGTTTGACGAA
CATGTACTGTATAGGATGTTGGGTGTTTGGTATTGCTTATTCCATCCCCT
CCTTCTTCCCATGCTGTTCTCTACATTTCGATTACACCTTGATGTCATGG
GGCTGGAGTATAGACTTCGATGGCGCCAAAACATTAGCTTTGGGTGAAAT
AACCATGGTAGTCATCATCACATCAATCACTTACTTCCTCAACGGCCTCG
ttttcaggtaaaaaaaattatgttacgTTTTAAACTACGAATAGTTTCTT
TCATCTGATTAAATACCATCAGCCAGTCAAATAATAACACTTTCTCTTCA
CCAAAACATATTCCGAGGTTATTGTTCGTTTATGGTTGCAAGGGATCGAA
AAGTTCCCTTGACAAATCAGTCTGATATGGAACTCCAGAATTCCATTTAA
TCCGTGTTTTTTCCTCCAGAAGTAGTTCaaacatattctttttgtttacg
TTTCAGAGCACTTCGAGAAGCTCAACGTAACACGTCTTTAGACGCCGTAC
ACGAGCAGCGTAAGAGCGCACGTGAACGTAAAGTGTTTATCCAATTCTTC
ATCACCACTATTTGGTTGGTGGTGTTTGATGTACCCTTCATCACGATCGG
TTACATTGAGAACCCGTCACACTGGTTGGGTTATTTCGTCACGTTAGCTT
ACACCATCAATTGCTCCATCAATGGATGGGTTTATTGCTTCATGAACAAA
ACTGTCAAACGTGAGATCCGAGAGATCTGTCGGCGTGGATATCGGATACG
TGCAGATACGGAAATGAGTGATCAAGGTCGCAAAACTATCGTTAGACAAC
GAAAGGATACTAAAAAATCTGAGGTGGAAAATTTCCGTTTAAAACAAGGC
AACACTTCATCCGCATAGGGTGGATACCATCCTTAATTAAGAGAGGGTTT
TGAAAAACTTGTGAATTTATTTGTATATTGATTTTAGCATTGAACACATC
TTTTTATTGTTTAGTtactttttttacaaattgTATATATGCGTGCGTGT
GTTAAAATGCAAGGTTTGTCAAAAACTGtttattggaaattttcatGATA
TCTAAAAGTCATGTTGGTGTTTGGAGTGACCGTTTGAGAGTCTCTTTCTC
AGTCTTTCTGGTAGGCTAACCTCAGAAATTTGCATTCGATTTCTCTTCCC
TCCAATTAATAAGGAAATTGCCTGGATTTCTCTCGTTTATAAAACTCTTG
AAACAAATATCACCTAACaacatttttgaccatttttcttgTGTTATTAA
TTGAATTTTTCGTTGTCATTGGCAACGAAGATGGTAGAATGTTCGAATAA
TGTAATTGTGGTACTTCCCAATAAAAAGTTGATGTTTGAGTGATGTCGTG
TGTCATTTGCACCAATTCACCAGGCGTGGGTAAAGTGAGGTAATATTTAG
CTGTTGGATGGTTTATTGAATGATAACTTTCATAAGTGTTGTAGAACTCT
GGTGTAAAACACTCCACAAAGACACAATCACGACCTTCTGTCTCCTGAAA
ATATATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000998-exon-sc0000007-1491911889:479139..479995 | TCONS_00000998-exon-sc0000007-1491911889:479139..479995 | Clytia hemisphaerica | exon |
| TCONS_00000998-exon-sc0000007-1510915933:479139..479995 | TCONS_00000998-exon-sc0000007-1510915933:479139..479995 | Clytia hemisphaerica | exon |
| TCONS_00000998-exon-sc0000007-1575043694:479139..479995 | TCONS_00000998-exon-sc0000007-1575043694:479139..479995 | Clytia hemisphaerica | exon |
| TCONS_00000998-exon-sc0000007-1491911889:480245..481297 | TCONS_00000998-exon-sc0000007-1491911889:480245..481297 | Clytia hemisphaerica | exon |
| TCONS_00000998-exon-sc0000007-1510915933:480245..481297 | TCONS_00000998-exon-sc0000007-1510915933:480245..481297 | Clytia hemisphaerica | exon |
| TCONS_00000998-exon-sc0000007-1575043694:480245..481297 | TCONS_00000998-exon-sc0000007-1575043694:480245..481297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:479139..481297 + |
Blast
The following BLAST results are available for this feature:
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