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TCONS_00000998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000998
Unique NameTCONS_00000998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000998 ID=TCONS_00000998|Name=TCONS_00000998|organism=Clytia hemisphaerica|type=transcript|length=1910bp
CGCAAAATCATTTCTGAGTGAGTTGATATGACAATAATTTGTTTTATATT
AAAATCTACTAAGTCATGTAGTGAAGTGGTTAAAAGTGTATAATTGAAAA
GGATATATCAGACATCAAAAGTGACAATTACTACTCTAAAACAAACTTTA
CAATCGATTAAACttcaataaaatcataaaaagtcTAAAAGTCATTTTTC
TGTTCTGTCTAACTTTTAGGTGTTTATTCGACGAGGAAACAGAGAAACAA
TGGCGGATCACAACTCAACGGCGGTAGATCTGGCCTTCTCGTTAGAAACC
AGTCAAATATGTGGCGCCTTTCTACTCATCGTTTCGTTGTTCGGTCTCAT
GGTGTACGTTCTATTCATGTTCGTCGTGTTCACACGTCCTAAGTTTAAAG
ACAAGACTTATTTTACGATCGCTGGATGTCTCGGTATCGCAGATTGTATG
TGTCTCTTCCTAATGATTGGATACGCTTCCCCTTGTCTATTTTACCGAAC
AAGTCTAAGCAACAGTCTCGCGTTGGGTGGCGTATTGAACATTGGATGGT
TCAGCGGACTACCACTACTCATCTTTCTAGCTGGTGATCGATATTTGTGC
ATCTGTAACAAAGATTTGTACAGCAGGTTTTACAAGAAACGTTTGACGAA
CATGTACTGTATAGGATGTTGGGTGTTTGGTATTGCTTATTCCATCCCCT
CCTTCTTCCCATGCTGTTCTCTACATTTCGATTACACCTTGATGTCATGG
GGCTGGAGTATAGACTTCGATGGCGCCAAAACATTAGCTTTGGGTGAAAT
AACCATGGTAGTCATCATCACATCAATCACTTACTTCCTCAACGGCCTCG
ttttcagAGCACTTCGAGAAGCTCAACGTAACACGTCTTTAGACGCCGTA
CACGAGCAGCGTAAGAGCGCACGTGAACGTAAAGTGTTTATCCAATTCTT
CATCACCACTATTTGGTTGGTGGTGTTTGATGTACCCTTCATCACGATCG
GTTACATTGAGAACCCGTCACACTGGTTGGGTTATTTCGTCACGTTAGCT
TACACCATCAATTGCTCCATCAATGGATGGGTTTATTGCTTCATGAACAA
AACTGTCAAACGTGAGATCCGAGAGATCTGTCGGCGTGGATATCGGATAC
GTGCAGATACGGAAATGAGTGATCAAGGTCGCAAAACTATCGTTAGACAA
CGAAAGGATACTAAAAAATCTGAGGTGGAAAATTTCCGTTTAAAACAAGG
CAACACTTCATCCGCATAGGGTGGATACCATCCTTAATTAAGAGAGGGTT
TTGAAAAACTTGTGAATTTATTTGTATATTGATTTTAGCATTGAACACAT
CTTTTTATTGTTTAGTtactttttttacaaattgTATATATGCGTGCGTG
TGTTAAAATGCAAGGTTTGTCAAAAACTGtttattggaaattttcatGAT
ATCTAAAAGTCATGTTGGTGTTTGGAGTGACCGTTTGAGAGTCTCTTTCT
CAGTCTTTCTGGTAGGCTAACCTCAGAAATTTGCATTCGATTTCTCTTCC
CTCCAATTAATAAGGAAATTGCCTGGATTTCTCTCGTTTATAAAACTCTT
GAAACAAATATCACCTAACaacatttttgaccatttttcttgTGTTATTA
ATTGAATTTTTCGTTGTCATTGGCAACGAAGATGGTAGAATGTTCGAATA
ATGTAATTGTGGTACTTCCCAATAAAAAGTTGATGTTTGAGTGATGTCGT
GTGTCATTTGCACCAATTCACCAGGCGTGGGTAAAGTGAGGTAATATTTA
GCTGTTGGATGGTTTATTGAATGATAACTTTCATAAGTGTTGTAGAACTC
TGGTGTAAAACACTCCACAAAGACACAATCACGACCTTCTGTCTCCTGAA
AATATATAAG
Run BLAST on NCBI

transcript from alignment at sc0000007:479139..481297+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000998 ID=TCONS_00000998|Name=TCONS_00000998|organism=Clytia hemisphaerica|type=transcript|length=2159bp|location=Sequence derived from alignment at sc0000007:479139..481297+ (Clytia hemisphaerica)
CGCAAAATCATTTCTGAGTGAGTTGATATGACAATAATTTGTTTTATATT AAAATCTACTAAGTCATGTAGTGAAGTGGTTAAAAGTGTATAATTGAAAA GGATATATCAGACATCAAAAGTGACAATTACTACTCTAAAACAAACTTTA CAATCGATTAAACttcaataaaatcataaaaagtcTAAAAGTCATTTTTC TGTTCTGTCTAACTTTTAGGTGTTTATTCGACGAGGAAACAGAGAAACAA TGGCGGATCACAACTCAACGGCGGTAGATCTGGCCTTCTCGTTAGAAACC AGTCAAATATGTGGCGCCTTTCTACTCATCGTTTCGTTGTTCGGTCTCAT GGTGTACGTTCTATTCATGTTCGTCGTGTTCACACGTCCTAAGTTTAAAG ACAAGACTTATTTTACGATCGCTGGATGTCTCGGTATCGCAGATTGTATG TGTCTCTTCCTAATGATTGGATACGCTTCCCCTTGTCTATTTTACCGAAC AAGTCTAAGCAACAGTCTCGCGTTGGGTGGCGTATTGAACATTGGATGGT TCAGCGGACTACCACTACTCATCTTTCTAGCTGGTGATCGATATTTGTGC ATCTGTAACAAAGATTTGTACAGCAGGTTTTACAAGAAACGTTTGACGAA CATGTACTGTATAGGATGTTGGGTGTTTGGTATTGCTTATTCCATCCCCT CCTTCTTCCCATGCTGTTCTCTACATTTCGATTACACCTTGATGTCATGG GGCTGGAGTATAGACTTCGATGGCGCCAAAACATTAGCTTTGGGTGAAAT AACCATGGTAGTCATCATCACATCAATCACTTACTTCCTCAACGGCCTCG ttttcaggtaaaaaaaattatgttacgTTTTAAACTACGAATAGTTTCTT TCATCTGATTAAATACCATCAGCCAGTCAAATAATAACACTTTCTCTTCA CCAAAACATATTCCGAGGTTATTGTTCGTTTATGGTTGCAAGGGATCGAA AAGTTCCCTTGACAAATCAGTCTGATATGGAACTCCAGAATTCCATTTAA TCCGTGTTTTTTCCTCCAGAAGTAGTTCaaacatattctttttgtttacg TTTCAGAGCACTTCGAGAAGCTCAACGTAACACGTCTTTAGACGCCGTAC ACGAGCAGCGTAAGAGCGCACGTGAACGTAAAGTGTTTATCCAATTCTTC ATCACCACTATTTGGTTGGTGGTGTTTGATGTACCCTTCATCACGATCGG TTACATTGAGAACCCGTCACACTGGTTGGGTTATTTCGTCACGTTAGCTT ACACCATCAATTGCTCCATCAATGGATGGGTTTATTGCTTCATGAACAAA ACTGTCAAACGTGAGATCCGAGAGATCTGTCGGCGTGGATATCGGATACG TGCAGATACGGAAATGAGTGATCAAGGTCGCAAAACTATCGTTAGACAAC GAAAGGATACTAAAAAATCTGAGGTGGAAAATTTCCGTTTAAAACAAGGC AACACTTCATCCGCATAGGGTGGATACCATCCTTAATTAAGAGAGGGTTT TGAAAAACTTGTGAATTTATTTGTATATTGATTTTAGCATTGAACACATC TTTTTATTGTTTAGTtactttttttacaaattgTATATATGCGTGCGTGT GTTAAAATGCAAGGTTTGTCAAAAACTGtttattggaaattttcatGATA TCTAAAAGTCATGTTGGTGTTTGGAGTGACCGTTTGAGAGTCTCTTTCTC AGTCTTTCTGGTAGGCTAACCTCAGAAATTTGCATTCGATTTCTCTTCCC TCCAATTAATAAGGAAATTGCCTGGATTTCTCTCGTTTATAAAACTCTTG AAACAAATATCACCTAACaacatttttgaccatttttcttgTGTTATTAA TTGAATTTTTCGTTGTCATTGGCAACGAAGATGGTAGAATGTTCGAATAA TGTAATTGTGGTACTTCCCAATAAAAAGTTGATGTTTGAGTGATGTCGTG TGTCATTTGCACCAATTCACCAGGCGTGGGTAAAGTGAGGTAATATTTAG CTGTTGGATGGTTTATTGAATGATAACTTTCATAAGTGTTGTAGAACTCT GGTGTAAAACACTCCACAAAGACACAATCACGACCTTCTGTCTCCTGAAA ATATATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000580XLOC_000580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000998-exon-sc0000007-1491911889:479139..479995TCONS_00000998-exon-sc0000007-1491911889:479139..479995Clytia hemisphaericaexon
TCONS_00000998-exon-sc0000007-1510915933:479139..479995TCONS_00000998-exon-sc0000007-1510915933:479139..479995Clytia hemisphaericaexon
TCONS_00000998-exon-sc0000007-1575043694:479139..479995TCONS_00000998-exon-sc0000007-1575043694:479139..479995Clytia hemisphaericaexon
TCONS_00000998-exon-sc0000007-1491911889:480245..481297TCONS_00000998-exon-sc0000007-1491911889:480245..481297Clytia hemisphaericaexon
TCONS_00000998-exon-sc0000007-1510915933:480245..481297TCONS_00000998-exon-sc0000007-1510915933:480245..481297Clytia hemisphaericaexon
TCONS_00000998-exon-sc0000007-1575043694:480245..481297TCONS_00000998-exon-sc0000007-1575043694:480245..481297Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:479139..481297 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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