TCONS_00000997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000997
Unique NameTCONS_00000997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000997 ID=TCONS_00000997|Name=TCONS_00000997|organism=Clytia hemisphaerica|type=transcript|length=1848bp
CGCCGATATCAAAAGACAAATTTGACATGGCTTGTGAATCTAGTTATGTT
CCATAGTATTAATATCTAGACGTTAATTGATAAGAaacaaatttcttgat
tttttactCGGGGTGTAAAATCAACAAGTGATCGACTTTCCGCAAAATCA
TTTCTGAGTGTTTATTCGACGAGGAAACAGAGAAACAATGGCGGATCACA
ACTCAACGGCGGTAGATCTGGCCTTCTCGTTAGAAACCAGTCAAATATGT
GGCGCCTTTCTACTCATCGTTTCGTTGTTCGGTCTCATGGTGTACGTTCT
ATTCATGTTCGTCGTGTTCACACGTCCTAAGTTTAAAGACAAGACTTATT
TTACGATCGCTGGATGTCTCGGTATCGCAGATTGTATGTGTCTCTTCCTA
ATGATTGGATACGCTTCCCCTTGTCTATTTTACCGAACAAGTCTAAGCAA
CAGTCTCGCGTTGGGTGGCGTATTGAACATTGGATGGTTCAGCGGACTAC
CACTACTCATCTTTCTAGCTGGTGATCGATATTTGTGCATCTGTAACAAA
GATTTGTACAGCAGGTTTTACAAGAAACGTTTGACGAACATGTACTGTAT
AGGATGTTGGGTGTTTGGTATTGCTTATTCCATCCCCTCCTTCTTCCCAT
GCTGTTCTCTACATTTCGATTACACCTTGATGTCATGGGGCTGGAGTATA
GACTTCGATGGCGCCAAAACATTAGCTTTGGGTGAAATAACCATGGTAGT
CATCATCACATCAATCACTTACTTCCTCAACGGCCTCGttttcagAGCAC
TTCGAGAAGCTCAACGTAACACGTCTTTAGACGCCGTACACGAGCAGCGT
AAGAGCGCACGTGAACGTAAAGTGTTTATCCAATTCTTCATCACCACTAT
TTGGTTGGTGGTGTTTGATGTACCCTTCATCACGATCGGTTACATTGAGA
ACCCGTCACACTGGTTGGGTTATTTCGTCACGTTAGCTTACACCATCAAT
TGCTCCATCAATGGATGGGTTTATTGCTTCATGAACAAAACTGTCAAACG
TGAGATCCGAGAGATCTGTCGGCGTGGATATCGGATACGTGCAGATACGG
AAATGAGTGATCAAGGTCGCAAAACTATCGTTAGACAACGAAAGGATACT
AAAAAATCTGAGGTGGAAAATTTCCGTTTAAAACAAGGCAACACTTCATC
CGCATAGGGTGGATACCATCCTTAATTAAGAGAGGGTTTTGAAAAACTTG
TGAATTTATTTGTATATTGATTTTAGCATTGAACACATCTTTTTATTGTT
TAGTtactttttttacaaattgTATATATGCGTGCGTGTGTTAAAATGCA
AGGTTTGTCAAAAACTGtttattggaaattttcatGATATCTAAAAGTCA
TGTTGGTGTTTGGAGTGACCGTTTGAGAGTCTCTTTCTCAGTCTTTCTGG
TAGGCTAACCTCAGAAATTTGCATTCGATTTCTCTTCCCTCCAATTAATA
AGGAAATTGCCTGGATTTCTCTCGTTTATAAAACTCTTGAAACAAATATC
ACCTAACaacatttttgaccatttttcttgTGTTATTAATTGAATTTTTC
GTTGTCATTGGCAACGAAGATGGTAGAATGTTCGAATAATGTAATTGTGG
TACTTCCCAATAAAAAGTTGATGTTTGAGTGATGTCGTGTGTCATTTGCA
CCAATTCACCAGGCGTGGGTAAAGTGAGGTAATATTTAGCTGTTGGATGG
TTTATTGAATGATAACTTTCATAAGTGTTGTAGAACTCTGGTGTAAAACA
CTCCACAAAGACACAATCACGACCTTCTGTCTCCTGAAAATATATAAG
Run BLAST on NCBI

transcript from alignment at sc0000007:478999..481297+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000997 ID=TCONS_00000997|Name=TCONS_00000997|organism=Clytia hemisphaerica|type=transcript|length=2299bp|location=Sequence derived from alignment at sc0000007:478999..481297+ (Clytia hemisphaerica)
CGCCGATATCAAAAGACAAATTTGACATGGCTTGTGAATCTAGTTATGTT
CCATAGTATTAATATCTAGACGTTAATTGATAAGAaacaaatttcttgat
tttttactCGGGGTGTAAAATCAACAAGTGATCGACTTTCCGCAAAATCA
TTTCTGAGTGAGTTGATATGACAATAATTTGTTTTATATTAAAATCTACT
AAGTCATGTAGTGAAGTGGTTAAAAGTGTATAATTGAAAAGGATATATCA
GACATCAAAAGTGACAATTACTACTCTAAAACAAACTTTACAATCGATTA
AACttcaataaaatcataaaaagtcTAAAAGTCATTTTTCTGTTCTGTCT
AACTTTTAGGTGTTTATTCGACGAGGAAACAGAGAAACAATGGCGGATCA
CAACTCAACGGCGGTAGATCTGGCCTTCTCGTTAGAAACCAGTCAAATAT
GTGGCGCCTTTCTACTCATCGTTTCGTTGTTCGGTCTCATGGTGTACGTT
CTATTCATGTTCGTCGTGTTCACACGTCCTAAGTTTAAAGACAAGACTTA
TTTTACGATCGCTGGATGTCTCGGTATCGCAGATTGTATGTGTCTCTTCC
TAATGATTGGATACGCTTCCCCTTGTCTATTTTACCGAACAAGTCTAAGC
AACAGTCTCGCGTTGGGTGGCGTATTGAACATTGGATGGTTCAGCGGACT
ACCACTACTCATCTTTCTAGCTGGTGATCGATATTTGTGCATCTGTAACA
AAGATTTGTACAGCAGGTTTTACAAGAAACGTTTGACGAACATGTACTGT
ATAGGATGTTGGGTGTTTGGTATTGCTTATTCCATCCCCTCCTTCTTCCC
ATGCTGTTCTCTACATTTCGATTACACCTTGATGTCATGGGGCTGGAGTA
TAGACTTCGATGGCGCCAAAACATTAGCTTTGGGTGAAATAACCATGGTA
GTCATCATCACATCAATCACTTACTTCCTCAACGGCCTCGttttcaggta
aaaaaaattatgttacgTTTTAAACTACGAATAGTTTCTTTCATCTGATT
AAATACCATCAGCCAGTCAAATAATAACACTTTCTCTTCACCAAAACATA
TTCCGAGGTTATTGTTCGTTTATGGTTGCAAGGGATCGAAAAGTTCCCTT
GACAAATCAGTCTGATATGGAACTCCAGAATTCCATTTAATCCGTGTTTT
TTCCTCCAGAAGTAGTTCaaacatattctttttgtttacgTTTCAGAGCA
CTTCGAGAAGCTCAACGTAACACGTCTTTAGACGCCGTACACGAGCAGCG
TAAGAGCGCACGTGAACGTAAAGTGTTTATCCAATTCTTCATCACCACTA
TTTGGTTGGTGGTGTTTGATGTACCCTTCATCACGATCGGTTACATTGAG
AACCCGTCACACTGGTTGGGTTATTTCGTCACGTTAGCTTACACCATCAA
TTGCTCCATCAATGGATGGGTTTATTGCTTCATGAACAAAACTGTCAAAC
GTGAGATCCGAGAGATCTGTCGGCGTGGATATCGGATACGTGCAGATACG
GAAATGAGTGATCAAGGTCGCAAAACTATCGTTAGACAACGAAAGGATAC
TAAAAAATCTGAGGTGGAAAATTTCCGTTTAAAACAAGGCAACACTTCAT
CCGCATAGGGTGGATACCATCCTTAATTAAGAGAGGGTTTTGAAAAACTT
GTGAATTTATTTGTATATTGATTTTAGCATTGAACACATCTTTTTATTGT
TTAGTtactttttttacaaattgTATATATGCGTGCGTGTGTTAAAATGC
AAGGTTTGTCAAAAACTGtttattggaaattttcatGATATCTAAAAGTC
ATGTTGGTGTTTGGAGTGACCGTTTGAGAGTCTCTTTCTCAGTCTTTCTG
GTAGGCTAACCTCAGAAATTTGCATTCGATTTCTCTTCCCTCCAATTAAT
AAGGAAATTGCCTGGATTTCTCTCGTTTATAAAACTCTTGAAACAAATAT
CACCTAACaacatttttgaccatttttcttgTGTTATTAATTGAATTTTT
CGTTGTCATTGGCAACGAAGATGGTAGAATGTTCGAATAATGTAATTGTG
GTACTTCCCAATAAAAAGTTGATGTTTGAGTGATGTCGTGTGTCATTTGC
ACCAATTCACCAGGCGTGGGTAAAGTGAGGTAATATTTAGCTGTTGGATG
GTTTATTGAATGATAACTTTCATAAGTGTTGTAGAACTCTGGTGTAAAAC
ACTCCACAAAGACACAATCACGACCTTCTGTCTCCTGAAAATATATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000580XLOC_000580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000997-exon-sc0000007-1491911889:478999..479155TCONS_00000997-exon-sc0000007-1491911889:478999..479155Clytia hemisphaericaexon
TCONS_00000997-exon-sc0000007-1510915933:478999..479155TCONS_00000997-exon-sc0000007-1510915933:478999..479155Clytia hemisphaericaexon
TCONS_00000997-exon-sc0000007-1575043694:478999..479155TCONS_00000997-exon-sc0000007-1575043694:478999..479155Clytia hemisphaericaexon
TCONS_00000997-exon-sc0000007-1491911889:479358..479995TCONS_00000997-exon-sc0000007-1491911889:479358..479995Clytia hemisphaericaexon
TCONS_00000997-exon-sc0000007-1510915933:479358..479995TCONS_00000997-exon-sc0000007-1510915933:479358..479995Clytia hemisphaericaexon
TCONS_00000997-exon-sc0000007-1575043694:479358..479995TCONS_00000997-exon-sc0000007-1575043694:479358..479995Clytia hemisphaericaexon
TCONS_00000997-exon-sc0000007-1491911889:480245..481297TCONS_00000997-exon-sc0000007-1491911889:480245..481297Clytia hemisphaericaexon
TCONS_00000997-exon-sc0000007-1510915933:480245..481297TCONS_00000997-exon-sc0000007-1510915933:480245..481297Clytia hemisphaericaexon
TCONS_00000997-exon-sc0000007-1575043694:480245..481297TCONS_00000997-exon-sc0000007-1575043694:480245..481297Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:478999..481297 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.568892	0.140995	0.233944	0.318375	0.547746	0	0	0	0	0	0.143991	0	0.144284	0	0	0	0	0	0.312673	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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