XLOC_042580 (gene) - C. hemisphaerica

Overview
NameXLOC_042580
Unique NameXLOC_042580
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_480:79054..88629+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042580 ID=XLOC_042580|Name=XLOC_042580|organism=Clytia hemisphaerica|type=gene|length=9576bp|location=Sequence derived from alignment at scaffold_480:79054..88629+ (Clytia hemisphaerica)
AGTTCACAAAGGAAGAACTTTTTAGGTAAGCGTGCTTTTTCAGCTAGAAT
CACCATCTTTtttagcctgttagacgaaaaccgcttttttatcgcgattt
aacgtcTGTTACTTTTTGCCGTGGAATCGAATGTTCTTGGACGGGAAAGT
CCGTCCAAGNTTCACCTACCTAGCTTTTACTCATTCAGTTCACAAAGGAA
GAACTTTTTAGGTAAGCGTGCTTTTTCAGCTAGAATCACCATCTTTTTCT
GCAGACGTCATTAAGTCGAACGACGCTTGTATTACTCGAGAAATAATTAG
CGATTCATTGCATTTTTCAATGTTCAGTACGGTGCTCCGTTCAGTTCAGT
ACTGTCTCCAAACAACATCTCACTTCCCTCGCTCTCAACAATCAGACAGT
CTGACAGTTACGTTACAGTCTTGCAGCAGTAGGTATTGTATATTCATTTC
CAAGCATATTTCTGTATTAATTTGCATTATTTTTACATACATGCTCCTGC
CTAGTCAGGAGATCCATGATGTGAGTCCTTCTCtaggtggggggcgtacg
agggttGCCAACACCGAAAAACCGacagatttttcttaaatcaccgtaat
accgacaaaattttcctaaaacacCGACACCGACGTCTTTTAGAGCAAGC
TTAagatttttattctttgtacgAATGCTCAATATCACGAGCGTAGTAGT
GCACTAGTTCAGTTTTTCTTGGAGAAAACTATCGCCGATTCAAGGGTTTC
AAATCTTTAAAGCTCAGCTTTTCAACGACTAGTGGATAAACAAATCCAGA
ATTTTTAGGGAACACTTTGAAGGGTTGGTATTTTTACTTTACTGCTTACT
TTAGTTgactttgaagaaaaacatttaaNCTTTTCAACGACTAGTGGATA
AACAAATCCAGAATTTTTAGGGAACACTTTGAAGGGTTTAAAGTGGTATT
TTTACTTTACTGCTTACTTTAGTTgactttgaagaaaaacatttaaaaag
tttttaaaagatctttGCAAAAAACGAAGGAACAAAAGAGATATCTGAAT
GTATAAAGTAATGGaggaggaggcgcaaccatggctTGCGCCGacagaaa
aattttcaactttcaactttcaatctGTCTAAAAACGCCCCATATTATAC
CGatttagcaccaaaaataaagccCCTCAAATAAAATACATGAGCTGTTG
ATNCCTCCCGATCCCAAGAAATGGGTTTTCTAATCATTCACGGGTCGAAA
CCCCTGAAGCCTTAGCATGTTTCTCATTACATTGTCTTTTAAACGCTTTA
ACCAGAAAGGGTCGCAAACCGATTGAAACAAAGCCACGCGGGTAAAAGAA
GGCACaagcatggtttgcgccgacagaaaaatatttcaggaaatctcatt
tggctaaaaacgctctctttttcacaaaactaGTCATTTTACTATGCCAT
CCAGATAAATAGTTCGTTTGATTTAGGCTGAAACTAAGCTGGTATTGAAA
GCCTGCAAAGAGAGCTCTGCAAGGGGAGGACCACAGGAAGTATTTTATAT
TGAAAGGCAAATGAGATATGATTCGAGGGCNACGCAGGCAAAAATCTTTT
GTGTGAGAAAGGTCAAACCCACATTGACGCTTTTTCGCGAGGTCTGAATT
GCtgttttaaaaaatgctgacattTTATACATATAgcacttttttaaacc
aatcatcaaaacaaaagaacgcgCGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCGCGCAACGTCATTTCATTGTtcaattaaacaatagaatgtcctctttc
taaaattacattttaacgACCCGAAAGTTTgcaatgttttgacttttaag
aGATTAATAAGAATTGAAATAAAGTGTCTGTGTTTTTAATGCAGTAGAGT
GAATAATGTTATGCTTTTGCAGAATAAGCAAAGAGCCTCATgtatgtaca
gggtgtccctaataaaagtatcgagtttgaacatgcgattgagtagaaag
ctttaagtgtgtattcacaaaattgtattttaagctctccctcttttttc
tttgtcagttatacgttgtaactaccttttgtaatgagcctatgtgatgg
agaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNACCGacccaaaaaatcaattttaccgTCACCGCAA
GGCATGtccaacaccgaaataccgacactttttacttaaaacaccaaaac
accaacgcaaaaaagggtcaataccgacacaccgacaaacccgtacgccc
ccccctcTAGTAGGTACCATACTACTGATGAATCAATGGCAGAAAGCTTC
AAagcttatttttattttcattctcaGCTCTCAGGCAGTCAGGGTTTTAT
TCATTATAAAACAGatagtcccctgcccagttggcgaccagTCTAGTTGG
CGACAGTGCGATCGAATGTTTTTGAACCCAAAAAAAGTCATTCGAAAACA
cacctctggagaatttcttttataTACATACAGTACTTAATAATTAATCC
AGGCGGTGTCAATCGAACTGTTCGATTATTGAACTAATCAAACTTAATCG
CACCCATTATTGAACTAATCAAACTTAATCGCACCCTATCGAACGATAGC
TGTTCGATTACCGAACCCAATCGAACACCTATTGAACCGGGAAAACTTTT
ATTACTTTCTTTAAAGAAAGTGTCATCTCTATTATTTTTAATGTATTAAT
CTTTTCTTATTTTTTCCGGTGGTCCTTGCTTGGAAAACATTGGGGAACGC
ATTTGTTTTGCCACCAATAATGGCGCCAAATGTTTTGATTCGGAGTGGCA
ATCAACGAAAAGATTACATCATGAATATCAAGAATAATGAGTGAAGCATA
CGGTGCCTGTGTTTTGATTAAACAAACTCGTAATTTTCTGAAAGGTAAAA
AAAAGTAGAATCAATCCGACACACAATCATCGAACATCAATCGAACTTTC
ATCGAACTCATCAAATATcaatcgaacttcatcgaacaaagaacactcat
cgaactaaatcgaacttatcaagaaattttcgtaaagttcgatagctgtt
cgatcgggttcggtaatcgaactgctatcgttcgattttgttcgataaCA
AAAATCGGTTCGATAACAAAAATTGGTTCGATAGGGTTCAGTTTACACCG
CCTGGATTAAAGGGATAAAAttttgcggggacttaatttcgtggTTGGCA
cccggggggcactcgatttcgaaacgacagTATGTgtcgcgcaaaatctg
cttttaaaaatcttacccttagtgcagttcaatattaaaaatcgtaccct
tacagtgcagttcaatatggctgaaaaggaaccctttcagtgcattttct
catgatttacccaaccctttagtgcactatatttttcagctgtaaatctg
cgtgaaaaaagaagctttggaaattttctgtttcaaagaaaaactgcgaa
aattattcttgtcagctgtaattatcagacaatagaaacttttcaaacaa
acaagaagtaagaaaaacttttctttttatcaattattttgaatttgttt
taaaattcgacccttgcagtacaatctcacagaaacacacccttacagtg
cattttggaaTGCTGAaaaagcgcggcacatgacgtaggccagatcatat
gagtgacCCCCCCCCCGAGGGGTGGCACTATTGgatggcaatattttcac
gattttgtatctttatactgtcaaatcatgcatattggttgttgatatac
acattatttgcgctttttttatgcaagtaaccattcaaaaattatttaaa
tttgacatattttgagttttaattagaaatatttcgcggatttttgcgga
tgacacccaaatccgcgaaatccgttaaatttaatccccacgaaagttta
tcccattaaagtagtagTTATCTTCCTCCTTGGCCTATTTTTGGCGTAAT
GTGTAAAAAGAAATTCTGGAAACAACAACTACAAGAGGTCATCTTCAGAG
AAGACAATGACCTCTGAAGATGAGTGAAGTGAGTGAGCATTGAATATACA
GTATAGTGTTtaacaacatcaaaaacatTAAGCTTCTGGTTATTCTTTTT
ATCATTAAATTAGATGCCCAAGGAAACATTTTTCtagaaaagttctaaaa
aaggGTCCATTCTGCTCCTCTGCCAACCATGAACCTCCCCTTTGTAGCAA
TGGCAAAATGAATCAATTTAGGGGTTGCCCCACGCTCCAGAGAACTCTCA
TGTTCCTCCACTCTGTTTCAGCTATTTGCATAGCAAAAACAGCGAGAGGA
GAGagtacaaagtaaacaaaaataaaccgTAACAGTAAATAGATCTTGCA
TCTTGAGGTTTATAGCACCTTCAGAACAGATTTTTCGGTTTTATTCCCAG
GCAAAACCTCGTTTTTCTCCGTTTTTGTCGATTTTGGCCTaaatataatt
aaaattttGTAGTTAATATATATAgtagaggtatataattgttataTTCT
AATCatacttttttccaaggaatattttaagcCCAATTTGAGGGTGGTAA
CACCAACAGAACAGGTTGTAGGTTTTTTATCCAGGCAAAAGTGCCGAAAT
TTGCCCATTTTGGGCATTAAAAAGGCCGGAGAAcggtcaaatttcaaaaa
aaatctcagATTTGTGTACTTGGATTCCATTtatcccaggggggggggtc
gatagtaaaatctcagacatatatgagtagtaatttttacataccaccac
ccagactcttggaagaggtattttactaccctttttcggacaatttgtca
tggagaccacctattttttggttgattttcggacttattttacaaaaaaa
agctaaaaaatgattatttctgtgacacatttttcacttagtgcaaaatc
taatgttttgcccttagaattgaaatattttttattttgacaaaaaattt
agagaattttttgtttgcagcaaacaactttccaacaacaaattttgtta
aattataaaaattttcagattttttagaaaagtcatgtcatccaaaaaat
taaaagaattacaaaaatagctaaaatttgctaattttaccagttttaaa
ctacccaggtagtaaaaatttttcaaaatttaacacatagataccaccca
ttttagtatttaactaccctgggtagtaaaaagttttttcgattttttgt
cacaccaccaccgtaaacgtcattatgtctgagattttactaccgacccc
ccccccctgtttatcCAAAAACTTTAAATTAGCCCATTTTGGGCATTAAA
AGGCCGGAGAacggtcaaatttaaaaaagaaatctcaGATTTGTGTACTT
GGATTCCATTTATTCAAACAACTGGTTATACATTCCTTGTTACAAAGAGT
TTTGAGTACTTTATCCAATGATCCAACCGTATATGGACTGAGCTGCTTTT
AAAGCTTGTCTGCTTAGAATATAATCAGATCGAGATGTAAAAATCTAATT
GTAAAAATATCTTGAGCTAGTAAACTTCTTCCAAATGCAATGATTGTCCG
CATTGGACATTCAAAAGTTGATATTGGCTTTAACAAGCCGTATATAATTG
TTCTGAATTGTTTGAAAGGTTAAGTTACAATGAAAATCATAAGGATGTAT
AGACCTTATACCGAATAGGTAGAATCTAAAAATCCTATATTTATTTGAAT
AGTTGTTTATTGAACCAATCAAAAGGCGCTATTGTGTTATCCATCCCTTA
AATACTACCTAAATACTCGAATAGGTTTGAAGAATTTaatgcttttttta
aataaatcagACCTTAAGCTGTTGATTTAATTACAATGTTATTGGTGTTA
ATTATTAAGGAATTCTACAAAATATGACTATCTGTTCAAACAAGCGTTCT
TTAAGAAGTtaattggaaaaaagttttgagaaatGAAATCATCTTGTGAA
CTTCCAAGTAGTAAAACGTCCCTCCTTTCCAGGGATACAACCCTTTAAAT
GCTTTCATATTGATCCATTTGTTTGGAAGCTACTTTTTAGAAATAGGTTA
TATTTCTTAAACATTGGTATCTTTCAAAAGATTCGCTATAAACCTGTTCT
AATATGACTTGTTTGAATTAAAATTATTCGAATAATTCCATATGTCAGCT
ATCGGTATAGCCTAGTGATTTAAATTTTAACTTAACCCTTAAATGATTAA
GGCTTCCTAAAAACAATTATCAACTTTTCAATCTTCAATATGGGTAGGGA
ATCATTGTATTTGAAAGGAGCTCACTAGCTCAAGATAGTTTAAACAAGAT
TCAAAGCAGGTTGATTTTTGCTTAATGACTAGTTGAGCAGATAAACTTAA
AGCAGCAGTACACGGGGTTACCTCATTGGATAAAGATAAAGTACTCAAAA
CACCCTATGAGGATGAATGTATAACATTAGCCAGTGTCAAAAAGCCACAG
ACGAACTAAAAGCTCAGAAATATCCTTGAAATATCCTCAATAAAAGCTAT
GTACATTGGGGAGAGGCATTAGCCTAACAGAGCCCCGATTTCGGACAACC
AGTCCATCAACAATCATTGTGTGACTGTCACACATATATAATTATGATAC
TTGTTATCTTTAGTATTTAAAGAATAGTAGAGAATGTCTCGCGAAACAGC
CTGGTCAAACTGGAATGAGTGGAAGCAttgcaaaaagttgtttttctcAA
ACGATAACAGTGAGATTTCGAAAGCAATAGATTTTGTGAAAATGTGGAAA
GCACGTATTAGAACAGGCTCTATGCCTGTATCTATTGATCTTACTTCAAT
TTTATTTGGTGCTAAAATACAACTTGATGGATCAAATCTTGAAAATGAGC
AGCAAGCTCTATTATGTGGTGCAATGGCTTTAGTTCGATTTGTGAATGGT
ATTACTGATCAATTCCAAACTGGCTTTTATGCTCAACCTGTTCAAAATAT
TGCTGATAAAATTGATATTCCAGAATGGATGGTTGAATTGCGCCATGAAA
TTACACATGGTCAGATACCCAGTGTGGATCTTGTACACAAAGGTTTGATG
TTTTCTTTAAATTGGCTTTTTGATAATTACTGGCAAGAAACAGCTTACAA
AATTGAAGATCAAAACAAGACATTTCAAAAATCTGTCATTGAGTTACTCA
ACCAGTACACAGATTTAGTTTTTGAATCTGTGGCAAATATAAAAGTGGAA
GCTTCTTCAGAAactaagaaagaaaagaaaaaagctaaTAAAAATGAACG
AGACCGTGAAATTGTGATTCAAAaccttttgaaaattgttaacCATGGTA
ATTTGTCTGTCTTTGTTGAATATTTATCAAAATGTAATAGCTTTGTATTG
GAAAACCATAAACAGCTTGAGTTGAGTCTTCCAACATCAGTAAATATGGA
ATTGGATGATACTGGATTTCAAGCTATTGATACTTTAGCAGAACTCTGGA
AACcattttttcttccatttcagGAGAGATTCAAACATATAAATGAACTC
CTGTTACAAAACCTTAGTGATAATGCTAAGAATTCTGGGAATCTAATATC
TACATTGTTGGCAGTTCACATATTATCATCAAACATTACCACTACGAACA
CTATAATATTTGttgtttctcttttattgaaaaatcctTCAATTCTCTCG
TTTCAAATTCTGTCCAAAATCATATTAAGTGTGGAAGTCATAAACACAGA
GATGAAAGAACTGTTGGAAGTATTTTTAAGTACTTTTGAATCTActgttt
attttttgaataaaaaactccCCGGTGTGATGGTTGATAAAACACATGTT
TTCACTGATGTTATTAGTAAATTAACTGGAGTTGAAGAGCCAAAAAAATC
CAATCCAAAGAGTGGTAACAAAAAGAAATGGACATGGTTATCAGATCAAG
AATTCCAGGAGTTGCCACCAATAGGCGAATTCAAATCTGGCAACACCTAT
CAAAATCTTAATACTCAATCCAGGATTTGTAAAGTCCATTACATTGATGA
TGTAAGCGTTCAACACTTGAAAGCCGAAACAACCAAAAGCTATTACAATC
CTGAAATTGCTGATGTTATTGAAAGTTTATTTGATAAGAATGGTCATGTC
TTTATTTATGATGATGATAGTGATAGTGAATCTTGTCCAACCGAAGGTTA
TACTGAAGACGCAGAGATGTCCTGGTTTGCTGATGAGGAACGTCCTGAAC
CAAACAAAGTCGATTTTGAGATTGAAGGAGATTCTGCTGATCAGAAAAAT
GGCATTCTGAAATCACACAATCTCTATGCTAACACTGTTGATGTATCAAA
GCtcatattattttaaaattcaacaaaagaaatttcattttttatataat
cacatattattttttcttcactttctgattttttattattctttTTTACA
ATACTTataattgaaattcaaaaaaaaattattttgttactttgtctttc
cttttttgtttgaagtccatGACACTGTCACTGTACTGATGATTGTAAAT
CTATCGTTTCTACTTTGGTCTGTTTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068212TCONS_00068212Clytia hemisphaericatranscript
TCONS_00068213TCONS_00068213Clytia hemisphaericatranscript
TCONS_00068214TCONS_00068214Clytia hemisphaericatranscript
TCONS_00068215TCONS_00068215Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068213-proteinTCONS_00068213-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_480supercontigscaffold_480:79054..88629 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.17	33.35	10.46	7.4	13.84	9.21	9.49	11.48	5.01	5.3	5.87	3.98	4.36	5.36	5.27	5.5	7.39	6.55	2.57	2.29	9	8.24	81.49	66.64	5.15	7.33	7.34	7.15	39.12	49.56