TCONS_00068215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068215
Unique NameTCONS_00068215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068215 ID=TCONS_00068215|Name=TCONS_00068215|organism=Clytia hemisphaerica|type=transcript|length=2302bp
TTTTCAATCTTCAATATGGGTAGGGAATCATTGTATTTGAAAGGAGCTCA
CTAGCTCAAGATAGTTTAAACAAGATTCAAAGCAGGTTGATTTTTGCTTA
ATGACTAGTTGAGCAGATAAACTTAAAGCAGCAGTACACGGGGTTACCTC
ATTGGATAAAGATAAAGTACTCAAAACACCCTATGAGGATGAATGTATAA
CATTAGCCAGTGTCAAAAAGCCACAGACGAACTAAAAGCTCAGAAATATC
CTTGAAATATCCTCAATAAAAGCTATGTACATTGGGGAGAGGCATTAGCC
TAACAGAGCCCCGATTTCGGACAACCAGTCCATCAACAATCATTGTGTGA
CTGTCACACATATATAATTATGATACTTGTTATCTTTAGTATTTAAAGAA
TAGTAGAGAATGTCTCGCGAAACAGCCTGGTCAAACTGGAATGAGTGGAA
GCAttgcaaaaagttgtttttctcAAACGATAACAGTGAGATTTCGAAAG
CAATAGATTTTGTGAAAATGTGGAAAGCACGTATTAGAACAGGCTCTATG
CCTGTATCTATTGATCTTACTTCAATTTTATTTGGTGCTAAAATACAACT
TGATGGATCAAATCTTGAAAATGAGCAGCAAGCTCTATTATGTGGTGCAA
TGGCTTTAGTTCGATTTGTGAATGGTATTACTGATCAATTCCAAACTGGC
TTTTATGCTCAACCTGTTCAAAATATTGCTGATAAAATTGATATTCCAGA
ATGGATGGTTGAATTGCGCCATGAAATTACACATGGTCAGATACCCAGTG
TGGATCTTGTACACAAAGGTTTGATGTTTTCTTTAAATTGGCTTTTTGAT
AATTACTGGCAAGAAACAGCTTACAAAATTGAAGATCAAAACAAGACATT
TCAAAAATCTGTCATTGAGTTACTCAACCAGTACACAGATTTAGTTTTTG
AATCTGTGGCAAATATAAAAGTGGAAGCTTCTTCAGAAactaagaaagaa
aagaaaaaagctaaTAAAAATGAACGAGACCGTGAAATTGTGATTCAAAa
ccttttgaaaattgttaacCATGGTAATTTGTCTGTCTTTGTTGAATATT
TATCAAAATGTAATAGCTTTGTATTGGAAAACCATAAACAGCTTGAGTTG
AGTCTTCCAACATCAGTAAATATGGAATTGGATGATACTGGATTTCAAGC
TATTGATACTTTAGCAGAACTCTGGAAACcattttttcttccatttcagG
AGAGATTCAAACATATAAATGAACTCCTGTTACAAAACCTTAGTGATAAT
GCTAAGAATTCTGGGAATCTAATATCTACATTGTTGGCAGTTCACATATT
ATCATCAAACATTACCACTACGAACACTATAATATTTGttgtttctcttt
tattgaaaaatcctTCAATTCTCTCGTTTCAAATTCTGTCCAAAATCATA
TTAAGTGTGGAAGTCATAAACACAGAGATGAAAGAACTGTTGGAAGTATT
TTTAAGTACTTTTGAATCTActgtttattttttgaataaaaaactccCCG
GTGTGATGGTTGATAAAACACATGTTTTCACTGATGTTATTAGTAAATTA
ACTGGAGTTGAAGAGCCAAAAAAATCCAATCCAAAGAGTGGTAACAAAAA
GAAATGGACATGGTTATCAGATCAAGAATTCCAGGAGTTGCCACCAATAG
GCGAATTCAAATCTGGCAACACCTATCAAAATCTTAATACTCAATCCAGG
ATTTGTAAAGTCCATTACATTGATGATGTAAGCGTTCAACACTTGAAAGC
CGAAACAACCAAAAGCTATTACAATCCTGAAATTGCTGATGTTATTGAAA
GTTTATTTGATAAGAATGGTCATGTCTTTATTTATGATGATGATAGTGAT
AGTGAATCTTGTCCAACCGAAGGTTATACTGAAGACGCAGAGATGTCCTG
GTTTGCTGATGAGGAACGTCCTGAACCAAACAAAGTCGATTTTGAGATTG
AAGGAGATTCTGCTGATCAGAAAAATGGCATTCTGAAATCACACAATCTC
TATGCTAACACTGTTGATGTATCAAAGCtcatattattttaaaattcaac
aaaagaaatttcattttttatataatcacatattattttttcttcacttt
ctgattttttattattctttTTTACAATACTTataattgaaattcaaaaa
aaaattattttgttactttgtctttccttttttgtttgaagtccatGACA
CTGTCACTGTACTGATGATTGTAAATCTATCGTTTCTACTTTGGTCTGTT
TT
Run BLAST on NCBI

transcript from alignment at scaffold_480:86328..88629+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068215 ID=TCONS_00068215|Name=TCONS_00068215|organism=Clytia hemisphaerica|type=transcript|length=2302bp|location=Sequence derived from alignment at scaffold_480:86328..88629+ (Clytia hemisphaerica)
TTTTCAATCTTCAATATGGGTAGGGAATCATTGTATTTGAAAGGAGCTCA
CTAGCTCAAGATAGTTTAAACAAGATTCAAAGCAGGTTGATTTTTGCTTA
ATGACTAGTTGAGCAGATAAACTTAAAGCAGCAGTACACGGGGTTACCTC
ATTGGATAAAGATAAAGTACTCAAAACACCCTATGAGGATGAATGTATAA
CATTAGCCAGTGTCAAAAAGCCACAGACGAACTAAAAGCTCAGAAATATC
CTTGAAATATCCTCAATAAAAGCTATGTACATTGGGGAGAGGCATTAGCC
TAACAGAGCCCCGATTTCGGACAACCAGTCCATCAACAATCATTGTGTGA
CTGTCACACATATATAATTATGATACTTGTTATCTTTAGTATTTAAAGAA
TAGTAGAGAATGTCTCGCGAAACAGCCTGGTCAAACTGGAATGAGTGGAA
GCAttgcaaaaagttgtttttctcAAACGATAACAGTGAGATTTCGAAAG
CAATAGATTTTGTGAAAATGTGGAAAGCACGTATTAGAACAGGCTCTATG
CCTGTATCTATTGATCTTACTTCAATTTTATTTGGTGCTAAAATACAACT
TGATGGATCAAATCTTGAAAATGAGCAGCAAGCTCTATTATGTGGTGCAA
TGGCTTTAGTTCGATTTGTGAATGGTATTACTGATCAATTCCAAACTGGC
TTTTATGCTCAACCTGTTCAAAATATTGCTGATAAAATTGATATTCCAGA
ATGGATGGTTGAATTGCGCCATGAAATTACACATGGTCAGATACCCAGTG
TGGATCTTGTACACAAAGGTTTGATGTTTTCTTTAAATTGGCTTTTTGAT
AATTACTGGCAAGAAACAGCTTACAAAATTGAAGATCAAAACAAGACATT
TCAAAAATCTGTCATTGAGTTACTCAACCAGTACACAGATTTAGTTTTTG
AATCTGTGGCAAATATAAAAGTGGAAGCTTCTTCAGAAactaagaaagaa
aagaaaaaagctaaTAAAAATGAACGAGACCGTGAAATTGTGATTCAAAa
ccttttgaaaattgttaacCATGGTAATTTGTCTGTCTTTGTTGAATATT
TATCAAAATGTAATAGCTTTGTATTGGAAAACCATAAACAGCTTGAGTTG
AGTCTTCCAACATCAGTAAATATGGAATTGGATGATACTGGATTTCAAGC
TATTGATACTTTAGCAGAACTCTGGAAACcattttttcttccatttcagG
AGAGATTCAAACATATAAATGAACTCCTGTTACAAAACCTTAGTGATAAT
GCTAAGAATTCTGGGAATCTAATATCTACATTGTTGGCAGTTCACATATT
ATCATCAAACATTACCACTACGAACACTATAATATTTGttgtttctcttt
tattgaaaaatcctTCAATTCTCTCGTTTCAAATTCTGTCCAAAATCATA
TTAAGTGTGGAAGTCATAAACACAGAGATGAAAGAACTGTTGGAAGTATT
TTTAAGTACTTTTGAATCTActgtttattttttgaataaaaaactccCCG
GTGTGATGGTTGATAAAACACATGTTTTCACTGATGTTATTAGTAAATTA
ACTGGAGTTGAAGAGCCAAAAAAATCCAATCCAAAGAGTGGTAACAAAAA
GAAATGGACATGGTTATCAGATCAAGAATTCCAGGAGTTGCCACCAATAG
GCGAATTCAAATCTGGCAACACCTATCAAAATCTTAATACTCAATCCAGG
ATTTGTAAAGTCCATTACATTGATGATGTAAGCGTTCAACACTTGAAAGC
CGAAACAACCAAAAGCTATTACAATCCTGAAATTGCTGATGTTATTGAAA
GTTTATTTGATAAGAATGGTCATGTCTTTATTTATGATGATGATAGTGAT
AGTGAATCTTGTCCAACCGAAGGTTATACTGAAGACGCAGAGATGTCCTG
GTTTGCTGATGAGGAACGTCCTGAACCAAACAAAGTCGATTTTGAGATTG
AAGGAGATTCTGCTGATCAGAAAAATGGCATTCTGAAATCACACAATCTC
TATGCTAACACTGTTGATGTATCAAAGCtcatattattttaaaattcaac
aaaagaaatttcattttttatataatcacatattattttttcttcacttt
ctgattttttattattctttTTTACAATACTTataattgaaattcaaaaa
aaaattattttgttactttgtctttccttttttgtttgaagtccatGACA
CTGTCACTGTACTGATGATTGTAAATCTATCGTTTCTACTTTGGTCTGTT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042580XLOC_042580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068215-exon-scaffold_480-1491911889:86328..88629TCONS_00068215-exon-scaffold_480-1491911889:86328..88629Clytia hemisphaericaexon
TCONS_00068215-exon-scaffold_480-1510915933:86328..88629TCONS_00068215-exon-scaffold_480-1510915933:86328..88629Clytia hemisphaericaexon
TCONS_00068215-exon-scaffold_480-1575043694:86328..88629TCONS_00068215-exon-scaffold_480-1575043694:86328..88629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_480supercontigscaffold_480:86328..88629 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16207e-07	0.000732376	0	0	2.61942e-10	1.73385	1.66792	1.50241	0	0	0.0066949	0	0	0	0	0	0	0	0	0	2.59624e-09	0	0.00184368	3.05701	4.87423e-10	1.4009	0.0504159	0.284009	0.07676	0
Blast
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BLAST of TCONS_00068215 vs. Swiss-Prot (Human)
Match: LAS1L (Ribosomal biogenesis protein LAS1L OS=Homo sapiens GN=LAS1L PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.362e-18
Identity = 48/145 (33.10%), Postives = 85/145 (58.62%), Query Frame = 2 
Query:  425 AWSNWNEWKHCKKLFFSNDNSEISKAIDFVKMWKARIRTGSMPVSIDLTSILFGAKIQLDGSNLENEQQALLCGAMALVRFVNGITDQFQTGFYAQPVQNIADKIDIPEWMVELRHEITHGQIPSVDLVHKGLMFSLNWLFDNYW 859
            AW +  EW       F +D+     A++ + +W++R     +P+++  T+ L   K+      L  ++  LL G MALVRFVN I+++ +T F   P++ +A +++IP+W+V+LRHE+TH ++P ++   +G  F L+WL   YW
Sbjct:   44 AWLSRAEWDQVTVYLFCDDHKLQRYALNRITVWRSR-SGNELPLAVASTADLIRCKLLDVTGGLGTDELRLLYG-MALVRFVNLISER-KTKFAKVPLKCLAQEVNIPDWIVDLRHELTHKKMPHINDCRRGCYFVLDWLQKTYW 185
The following BLAST results are available for this feature:
BLAST of TCONS_00068215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAS1L2.362e-1833.10Ribosomal biogenesis protein LAS1L OS=Homo sapiens... [more]
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