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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068214 ID=TCONS_00068214|Name=TCONS_00068214|organism=Clytia hemisphaerica|type=transcript|length=1871bp
TTTTCAATCTTCAATATGGGTAGGGAATCATTGTATTTGAAAGGAGCTCA
CTAGCTCAAGATAGTTTAAACAAGATTCAAAGCAGGTTGATTTTTGCTTA
ATGACTAGTTGAGCAGATAAACTTAAAGCAGCAGTACACGGGGTTACCTC
ATTGGATAAAGATAAAGTACTCAAAACACCCTATGAGGATGAATGTATAA
CATTAGCCAGTGTCAAAAAGCCACAGACGAACTAAAAGCTCAGAAATATC
CTTGAAATATCCTCAATAAAAGCTATGTACATTGGGGAGAGGCATTAGCC
TAACAGAGCCCCGATTTCGGACAACCAGTCCATCAACAATCATTGTGTGA
CTGTCACACATATATAATTATGATACTTGTTATCTTTAGTATTTAAAGAA
TAGTAGAGAATGTCTCGCGAAACAGCCTGGTCAAACTGGAATGAGTGGAA
GCAttgcaaaaagttgtttttctcAAACGATAACAGTGAGATTTCGAAAG
CAATAGATTTTGTGAAAATGTGGAAAGCACGTATTAGAACAGGCTCTATG
CCTGTATCTATTGATCTTACTTCAATTTTATTTGGTGCTAAAATACAACT
TGATGGATCAAATCTTGAAAATGAGCAGCAAGCTCTATTATGTGGTGCAA
TGGCTTTAGTTCGATTTGTGAATGGTATTACTGATCAATTCCAAACTGGC
TTTTATGCTCAACCTGTTCAAAATATTGCTGATAAAATTGATATTCCAGA
ATGGATGGTTGAATTGCGCCATGAAATTACACATGGTCAGATACCCAGTG
TGGATCTTGTACACAAAGGAGAGATTCAAACATATAAATGAACTCCTGTT
ACAAAACCTTAGTGATAATGCTAAGAATTCTGGGAATCTAATATCTACAT
TGTTGGCAGTTCACATATTATCATCAAACATTACCACTACGAACACTATA
ATATTTGttgtttctcttttattgaaaaatcctTCAATTCTCTCGTTTCA
AATTCTGTCCAAAATCATATTAAGTGTGGAAGTCATAAACACAGAGATGA
AAGAACTGTTGGAAGTATTTTTAAGTACTTTTGAATCTActgtttatttt
ttgaataaaaaactccCCGGTGTGATGGTTGATAAAACACATGTTTTCAC
TGATGTTATTAGTAAATTAACTGGAGTTGAAGAGCCAAAAAAATCCAATC
CAAAGAGTGGTAACAAAAAGAAATGGACATGGTTATCAGATCAAGAATTC
CAGGAGTTGCCACCAATAGGCGAATTCAAATCTGGCAACACCTATCAAAA
TCTTAATACTCAATCCAGGATTTGTAAAGTCCATTACATTGATGATGTAA
GCGTTCAACACTTGAAAGCCGAAACAACCAAAAGCTATTACAATCCTGAA
ATTGCTGATGTTATTGAAAGTTTATTTGATAAGAATGGTCATGTCTTTAT
TTATGATGATGATAGTGATAGTGAATCTTGTCCAACCGAAGGTTATACTG
AAGACGCAGAGATGTCCTGGTTTGCTGATGAGGAACGTCCTGAACCAAAC
AAAGTCGATTTTGAGATTGAAGGAGATTCTGCTGATCAGAAAAATGGCAT
TCTGAAATCACACAATCTCTATGCTAACACTGTTGATGTATCAAAGCtca
tattattttaaaattcaacaaaagaaatttcattttttatataatcacat
attattttttcttcactttctgattttttattattctttTTTACAATACT
Tataattgaaattcaaaaaaaaattattttgttactttgtctttcctttt
ttgtttgaagtccatGACACTGTCACTGTACTGATGATTGTAAATCTATC
GTTTCTACTTTGGTCTGTTTT Run BLAST on NCBI transcript from alignment at scaffold_480:86328..88629+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068214 ID=TCONS_00068214|Name=TCONS_00068214|organism=Clytia hemisphaerica|type=transcript|length=2302bp|location=Sequence derived from alignment at scaffold_480:86328..88629+ (Clytia hemisphaerica)
TTTTCAATCTTCAATATGGGTAGGGAATCATTGTATTTGAAAGGAGCTCA
CTAGCTCAAGATAGTTTAAACAAGATTCAAAGCAGGTTGATTTTTGCTTA
ATGACTAGTTGAGCAGATAAACTTAAAGCAGCAGTACACGGGGTTACCTC
ATTGGATAAAGATAAAGTACTCAAAACACCCTATGAGGATGAATGTATAA
CATTAGCCAGTGTCAAAAAGCCACAGACGAACTAAAAGCTCAGAAATATC
CTTGAAATATCCTCAATAAAAGCTATGTACATTGGGGAGAGGCATTAGCC
TAACAGAGCCCCGATTTCGGACAACCAGTCCATCAACAATCATTGTGTGA
CTGTCACACATATATAATTATGATACTTGTTATCTTTAGTATTTAAAGAA
TAGTAGAGAATGTCTCGCGAAACAGCCTGGTCAAACTGGAATGAGTGGAA
GCAttgcaaaaagttgtttttctcAAACGATAACAGTGAGATTTCGAAAG
CAATAGATTTTGTGAAAATGTGGAAAGCACGTATTAGAACAGGCTCTATG
CCTGTATCTATTGATCTTACTTCAATTTTATTTGGTGCTAAAATACAACT
TGATGGATCAAATCTTGAAAATGAGCAGCAAGCTCTATTATGTGGTGCAA
TGGCTTTAGTTCGATTTGTGAATGGTATTACTGATCAATTCCAAACTGGC
TTTTATGCTCAACCTGTTCAAAATATTGCTGATAAAATTGATATTCCAGA
ATGGATGGTTGAATTGCGCCATGAAATTACACATGGTCAGATACCCAGTG
TGGATCTTGTACACAAAGGTTTGATGTTTTCTTTAAATTGGCTTTTTGAT
AATTACTGGCAAGAAACAGCTTACAAAATTGAAGATCAAAACAAGACATT
TCAAAAATCTGTCATTGAGTTACTCAACCAGTACACAGATTTAGTTTTTG
AATCTGTGGCAAATATAAAAGTGGAAGCTTCTTCAGAAactaagaaagaa
aagaaaaaagctaaTAAAAATGAACGAGACCGTGAAATTGTGATTCAAAa
ccttttgaaaattgttaacCATGGTAATTTGTCTGTCTTTGTTGAATATT
TATCAAAATGTAATAGCTTTGTATTGGAAAACCATAAACAGCTTGAGTTG
AGTCTTCCAACATCAGTAAATATGGAATTGGATGATACTGGATTTCAAGC
TATTGATACTTTAGCAGAACTCTGGAAACcattttttcttccatttcagG
AGAGATTCAAACATATAAATGAACTCCTGTTACAAAACCTTAGTGATAAT
GCTAAGAATTCTGGGAATCTAATATCTACATTGTTGGCAGTTCACATATT
ATCATCAAACATTACCACTACGAACACTATAATATTTGttgtttctcttt
tattgaaaaatcctTCAATTCTCTCGTTTCAAATTCTGTCCAAAATCATA
TTAAGTGTGGAAGTCATAAACACAGAGATGAAAGAACTGTTGGAAGTATT
TTTAAGTACTTTTGAATCTActgtttattttttgaataaaaaactccCCG
GTGTGATGGTTGATAAAACACATGTTTTCACTGATGTTATTAGTAAATTA
ACTGGAGTTGAAGAGCCAAAAAAATCCAATCCAAAGAGTGGTAACAAAAA
GAAATGGACATGGTTATCAGATCAAGAATTCCAGGAGTTGCCACCAATAG
GCGAATTCAAATCTGGCAACACCTATCAAAATCTTAATACTCAATCCAGG
ATTTGTAAAGTCCATTACATTGATGATGTAAGCGTTCAACACTTGAAAGC
CGAAACAACCAAAAGCTATTACAATCCTGAAATTGCTGATGTTATTGAAA
GTTTATTTGATAAGAATGGTCATGTCTTTATTTATGATGATGATAGTGAT
AGTGAATCTTGTCCAACCGAAGGTTATACTGAAGACGCAGAGATGTCCTG
GTTTGCTGATGAGGAACGTCCTGAACCAAACAAAGTCGATTTTGAGATTG
AAGGAGATTCTGCTGATCAGAAAAATGGCATTCTGAAATCACACAATCTC
TATGCTAACACTGTTGATGTATCAAAGCtcatattattttaaaattcaac
aaaagaaatttcattttttatataatcacatattattttttcttcacttt
ctgattttttattattctttTTTACAATACTTataattgaaattcaaaaa
aaaattattttgttactttgtctttccttttttgtttgaagtccatGACA
CTGTCACTGTACTGATGATTGTAAATCTATCGTTTCTACTTTGGTCTGTT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068214-exon-scaffold_480-1491911889:86328..87145 | TCONS_00068214-exon-scaffold_480-1491911889:86328..87145 | Clytia hemisphaerica | exon |
| TCONS_00068214-exon-scaffold_480-1510915933:86328..87145 | TCONS_00068214-exon-scaffold_480-1510915933:86328..87145 | Clytia hemisphaerica | exon |
| TCONS_00068214-exon-scaffold_480-1575043694:86328..87145 | TCONS_00068214-exon-scaffold_480-1575043694:86328..87145 | Clytia hemisphaerica | exon |
| TCONS_00068214-exon-scaffold_480-1491911889:87577..88629 | TCONS_00068214-exon-scaffold_480-1491911889:87577..88629 | Clytia hemisphaerica | exon |
| TCONS_00068214-exon-scaffold_480-1510915933:87577..88629 | TCONS_00068214-exon-scaffold_480-1510915933:87577..88629 | Clytia hemisphaerica | exon |
| TCONS_00068214-exon-scaffold_480-1575043694:87577..88629 | TCONS_00068214-exon-scaffold_480-1575043694:87577..88629 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:86328..88629 + |
Blast
The following BLAST results are available for this feature:
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