TCONS_00068213-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068213-protein
Unique NameTCONS_00068213-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068213-protein ID=TCONS_00068213-protein|Name=TCONS_00068213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp
MSRETAWSNWNEWKHCKKLFFSNDNSEISKAIDFVKMWKARIRTGSMPVS
IDLTSILFGAKIQLDGSNLENEQQALLCGAMALVRFVNGITDQFQTGFYA
QPVQNIADKIDIPEWMVELRHEITHGQIPSVDLVHKGLMFSLNWLFDNYW
QETAYKIEDQNKTFQKSVIELLNQYTDLVFESVANIKVEASSETKKEKKK
ANKNERDREIVIQNLLKIVNHGNLSVFVEYLSKCNSFVLENHKQLELSLP
TSVNMELDDTGFQAIDTLAELWKPFFLPFQERFKHINELLLQNLSDNAKN
SGNLISTLLAVHILSSNITTTNTIIFVVSLLLKNPSILSFQILSKIILSV
EVINTEMKELLEVFLSTFESTVYFLNKKLPGVMVDKTHVFTDVISKLTGV
EEPKKSNPKSGNKKKWTWLSDQEFQELPPIGEFKSGNTYQNLNTQSRICK
VHYIDDVSVQHLKAETTKSYYNPEIADVIESLFDKNGHVFIYDDDSDSES
CPTEGYTEDAEMSWFADEERPEPNKVDFEIEGDSADQKNGILKSHNLYAN
TVDVSKLILF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042580XLOC_042580Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068213TCONS_00068213Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007174Las1
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007174Las1-likePFAMPF04031Las1coord: 5..151
e-value: 7.3E-39
score: 133.2

Blast
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BLAST of TCONS_00068213-protein vs. Swiss-Prot (Human)
Match: LAS1L (Ribosomal biogenesis protein LAS1L OS=Homo sapiens GN=LAS1L PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.562e-19
Identity = 48/145 (33.10%), Postives = 85/145 (58.62%), Query Frame = 0 
Query:    6 AWSNWNEWKHCKKLFFSNDNSEISKAIDFVKMWKARIRTGSMPVSIDLTSILFGAKIQLDGSNLENEQQALLCGAMALVRFVNGITDQFQTGFYAQPVQNIADKIDIPEWMVELRHEITHGQIPSVDLVHKGLMFSLNWLFDNYW 150
            AW +  EW       F +D+     A++ + +W++R     +P+++  T+ L   K+      L  ++  LL G MALVRFVN I+++ +T F   P++ +A +++IP+W+V+LRHE+TH ++P ++   +G  F L+WL   YW
Sbjct:   44 AWLSRAEWDQVTVYLFCDDHKLQRYALNRITVWRSR-SGNELPLAVASTADLIRCKLLDVTGGLGTDELRLLYG-MALVRFVNLISER-KTKFAKVPLKCLAQEVNIPDWIVDLRHELTHKKMPHINDCRRGCYFVLDWLQKTYW 185
The following BLAST results are available for this feature:
BLAST of TCONS_00068213-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAS1L2.562e-1933.10Ribosomal biogenesis protein LAS1L OS=Homo sapiens... [more]
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