XLOC_031419 (gene) - C. hemisphaerica

Overview
NameXLOC_031419
Unique NameXLOC_031419
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_160:45365..49290+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031419 ID=XLOC_031419|Name=XLOC_031419|organism=Clytia hemisphaerica|type=gene|length=3926bp|location=Sequence derived from alignment at scaffold_160:45365..49290+ (Clytia hemisphaerica)
ctaaagacAGTTTTCAGCTGGCGAGAGGTTAGAAAGTGAAGCCCCagaca
ttacgtaatgttttcgaAATTGAACTCTCCCCGATACGAATTAGGCGCga
cttaaaatttttttcatgagtttcaaaattgaagcGGTGGTTGTTTGTTG
GACTTGGTTGCTACTTATTTTCTTGTATAGCATGGATGAATCAACTTTGT
TGAAGAATTTGGCGTTCCAGTTTGGTATCGAAGCTTTTCACCAGCCCCAA
GTTAATGTTCTGAGGGCATTTTTTAATGGAAAACACACATATTTCAGTGC
CCCAACAGGTTTGATTTGACAGGCAGTCATTATAGTAGTTTCATCTCTCC
CAAAAACTCTACTTTATTTGAGACAACTTCTCAAGATTGACCATCTAGGC
TACTAGGCAGGCATCAtacttaaaaatggtttttgaATTATACCCATCAA
AACAGCAGGGTAAAGATTCCAATTTTATCAAACGTACGTGTGTTTATAct
ataataaaattaaaaaaattaagaaagctTAAACAAATTTAACGTAGTCa
taaattaaaaatcagttGTGTTATTGTCATTTAGGCTATGGAAAGTCAGT
TGTTTTCCAAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAGATTA
GCAATCCAGTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAACGAT
CAGATCAAGGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAGACAA
GACTGTAACTGATGAGTGTTATGAAGGTATGTCTATATTATTTAGATTTA
GAATTATTTTACTTAAGATAAGTCTGGTTGTTAGTATAGACTCTAGATTC
ATCAACAAAGAAGTACTCTTCTCTTAACTTAGGGGCCTACTGTAATAAAT
TAATACTTCGTCCTAAATTGATATTCATATAAGCCCTACCGTGaacatca
aatgactgaccaatcaaagcagaagaatttcaaaacaaatgaactacgca
gctccattcacagctctactctacaatttttgttttgattttatatactt
tgtattttaatgaccgaccaggtcattcatttgagggctatgcatgttat
ccTCCACTGATgaaagttacccgatctcacagtaACAATTAGCATGGAGT
AACATGGCTTTACTTTCAGGCGACTTCAGATAAATAACCCCTCGTTTCCT
TAAACATTTTGGCAAATAACCCTCAATAACTGTCATTTGTTTATTACACA
CCAAAGAGTAGAGCAATAGCAATGTACTATTAAGTAAGCTGTCAGATAGT
ACAGCAgtttcattttataatatctctTAAAAAGTTTTATCTGAATTCAA
TGTTGTTCCCTCCAAGATATCAAAGCTGGTACATATTCATTGGTGTATGC
CTGTCCAGAAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCTGATT
CTGAGTTTGTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACATGTA
ATGGTTGAATGGTTTGTAGATTATTTTAATCTTTCGGAAAGGCTTTACCA
TGTTTTTTTCATGACATTAATGAACCACATTTTTTTGTCTTCTAAAATTT
TACAAACCTCCTGCTCTCTAACACTactaattttctatttttgagtGTCT
CTTCATATATTATATGTCAACTAACCAGTCGTTACACGATTTCACTTAAA
ACATATTTAACAACCATAGGGGCAAGTCATCAAATGAATCCACAAAAGCA
TTCAGAGAAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGTCATC
AAAAGCAAGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACTCAGG
CCACCATCTTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTGTGAA
ATATATCACCCTAACAAAAATAATGTTAGGTAATAATTATTTAACTTTGG
TATATACAAAATATTCAACTAATTTTCTGATCTGACATTTTGTGGTTACA
GTATAGTAAAATTATAGTTATGATGGATGATAATAGAtatttgattataa
aaaattaGTAATAGCTCTCTTAGTAGATAATGTTATTAGAAGAAATTCCT
AAACTTTGTCTGTCAGGTTTCAaatcaaatctttaaaaagaaattttttt
attcacaaGGATTTTTAGACTTCAAGAAAAAGTACAATGATAAGGCTATC
AGTATCACATCATTTTTTGTCAATAGATTCACAGTCGAGCAGATTTCAAT
GGGCAAAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATCATGG
AAGAAATAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATATGTC
AACACAAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTAAACT
CGGAGTTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCC
TTGTTGAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCATGTC
CTTGCCCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATATGCAC
ATCAGCTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGCATCC
ATTTTGGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGA
GTTGGTAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATAAAAG
TTTGGCAACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGCCATG
TTAAGTGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCG
TCTCTTTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATG
TAAGGAACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAATGCTC
AAGCTCCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAGGGAT
GAACTTAGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaataaaaa
gaaaaatctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTCACAG
AGTACCATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaacatc
caaGATCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAATCGA
AGTCTTAAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGACCAAA
TGGAACAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGT
TTTATGAATGATACCAGATATCAATCTGTGACAGACTCACAAGTCAATAG
CTATCTTCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACTCTTG
AAGATGAAGACTTTTAATTTATACTTACATGTTTTGTGCACCCCTTTATC
agggggttggtctaaaaagcagggttaGCTTGTGGGGTACCCCTTTTTTG
CCCAAATATTTGAAGGCTAGTGCAGGCTAGTGTTTTAATTTGTTAAAATA
CAATGTTAGAACCTTTAACAGAAATCTggtttaaatttaaaatccccAAC
ATTCTAAAACagactcaaaatgaaaatcagacCAATGGGTTATCTCATAA
CATCAATGGATAATTTACCTCATACCTATGATAACTTTAGGGATTCACAC
CTTGTAGTTGTAAGGATTACATATCAAGGATACATTTATTAATTATAGGT
AATCAAAAGGTCTAAGTTCAAATAgtagaaaaaacaaattttgaccATGT
TGTGTtaattcaagttaaatctttggCTACCCtcctttttagaccaaccc
attATCAGGTCAGTTATAGTTAAGGAAAGTCCAAATCATAAAGACAAATT
CAATATTGTCATTATTGGAAATAGAGAGATGTCTTCAAATCTATATATAC
AACTAACAGCAAATTTTGGGTTTTGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00049524TCONS_00049524Clytia hemisphaericatranscript
TCONS_00049525TCONS_00049525Clytia hemisphaericatranscript
TCONS_00049526TCONS_00049526Clytia hemisphaericatranscript
TCONS_00049527TCONS_00049527Clytia hemisphaericatranscript
TCONS_00049528TCONS_00049528Clytia hemisphaericatranscript
TCONS_00049529TCONS_00049529Clytia hemisphaericatranscript
TCONS_00049530TCONS_00049530Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00049526-proteinTCONS_00049526-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:45365..49290 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05	0.81	1.47	1.39	1.6	1.77	1.08	1.57	1	1.44	1.42	1.08	1.02	1.41	1.09	1.41	1.05	1.03	2.23	2.85	1.58	1.66	0.52	0.97	1.08	1.12	2.65	1.96	1.75	2.22