TCONS_00049526 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049526
Unique NameTCONS_00049526
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049526 ID=TCONS_00049526|Name=TCONS_00049526|organism=Clytia hemisphaerica|type=transcript|length=2377bp
agcGGTGGTTGTTTGTTGGACTTGGTTGCTACTTATTTTCTTGTATAGCA
TGGATGAATCAACTTTGTTGAAGAATTTGGCGTTCCAGTTTGGTATCGAA
GCTTTTCACCAGCCCCAAGTTAATGTTCTGAGGGCATTTTTTAATGGAAA
ACACACATATTTCAGTGCCCCAACAGGCTATGGAAAGTCAGTTGTTTTCC
AAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAGATTAGCAATCCA
GTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAACGATCAGATCAA
GGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAGACAAGACTGTAA
CTGATGAGTGTTATGAAGATATCAAAGCTGGTACATATTCATTGGTGTAT
GCCTGTCCAGAAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCTGA
TTCTGAGTTTGTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACATG
TAATGGTTGAATGGGGCAAGTCATCAAATGAATCCACAAAAGCATTCAGA
GAAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGTCATCAAAAGC
AAGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACTCAGGCCACCA
TCTTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTGTGAAATATAT
CACCCTAACAAAAATAATGTTAGATTCACAGTCGAGCAGATTTCAATGGG
CAAAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATCATGGAAG
AAATAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATATGTCAAC
ACAAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTAAACTCGG
AGTTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCCTTG
TTGAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCATGTCCTT
GCCCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATATGCACATC
AGCTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGCATCCATT
TTGGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGAGTT
GGTAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATAAAAGTTT
GGCAACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGCCATGTTA
AGTGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCGTCT
CTTTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATGTAA
GGAACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAATGCTCAAG
CTCCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAGGGATGAA
CTTAGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaataaaaagaa
aaatctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTCACAGAGT
ACCATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaacatccaa
GATCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAATCGAAGT
CTTAAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGACCAAATGG
AACAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGTTTT
ATGAATGATACCAGATATCAATCTGTGACAGACTCACAAGTCAATAGCTA
TCTTCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACTCTTGAAG
ATGAAGACTTTTAATTTATACTTACATGTTTTGTGCACCCCTTTATCagg
gggttggtctaaaaagcagggttaGCTTGTGGGGTACCCCTTTTTTGCCC
AAATATTTGAAGGCTAGTGCAGGCTAGTGTTTTAATTTGTTAAAATACAA
TGTTAGAACCTTTAACAGAAATCTggtttaaatttaaaatccccAACATT
CTAAAACagactcaaaatgaaaatcagacCAATGGGTTATCTCATAACAT
CAATGGATAATTTACCTCATACCTATGATAACTTTAGGGATTCACACCTT
GTAGTTGTAAGGATTACATATCAAGGATACATTTATTAATTATAGGTAAT
CAAAAGGTCTAAGTTCAAATAgtagaaaaaacaaattttgaccATGTTGT
GTtaattcaagttaaatctttggCTACCCtcctttttagaccaacccatt
ATCAGGTCAGTTATAGTTAAGGAAAGTCCAAATCATAAAGACAAATTCAA
TATTGTCATTATTGGAAATAGAGAGAT
Run BLAST on NCBI

protein sequence of TCONS_00049526-protein

>TCONS_00049526-protein ID=TCONS_00049526-protein|Name=TCONS_00049526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=620bp
AVVVCWTWLLLIFLYSMDESTLLKNLAFQFGIEAFHQPQVNVLRAFFNGK
HTYFSAPTGYGKSVVFQAVPRYFEELRPEISNPVLLVFSPLIALINDQIK
AAGDSCIMAISLDKTVTDECYEDIKAGTYSLVYACPEVLETKRWRMLFSD
SEFVDRCIGVVVDEAHVMVEWGKSSNESTKAFRESYSKIVELQSLLSSKA
RFMLFTATATSATQATIFSMLNLQSNDVYCEIYHPNKNNVRFTVEQISMG
KEDGRYLVNFFDFIMEEIIAKKEHTCKTIIYVNTRKEVNLLNNGMASKLG
VDLFLSGKEGNPRYRLVEEFHAYSPQSVKNHVLAQASILESHLRVIICTS
AFGMGVNVKGFNRCIHFGPPSTVESFVQEVGRVGRDGSPSESILMFHKSL
ATHASSDMVEYAGSHVKCRRDFLMVKFPGTYSSLSNCTCCDLCSNVCQCK
EPNCCKKLKQLNVNAQAPVTERRRNVSMAERDELRGLLNDFRMEIFNKKK
NLKQVSLPNLFHEFTEYHVKQVMVNVTKIFNIQDLKSRVEIWRTRHAIEV
LKIINSVFHDIEIDQMEQLNLEEEPLGLDDASFMNDTRYQSVTDSQVNSY
LLSDCTDGNISKRTLEDEDF
Run BLAST on NCBI

transcript from alignment at scaffold_160:45497..49244+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049526 ID=TCONS_00049526|Name=TCONS_00049526|organism=Clytia hemisphaerica|type=transcript|length=3748bp|location=Sequence derived from alignment at scaffold_160:45497..49244+ (Clytia hemisphaerica)
agcGGTGGTTGTTTGTTGGACTTGGTTGCTACTTATTTTCTTGTATAGCA
TGGATGAATCAACTTTGTTGAAGAATTTGGCGTTCCAGTTTGGTATCGAA
GCTTTTCACCAGCCCCAAGTTAATGTTCTGAGGGCATTTTTTAATGGAAA
ACACACATATTTCAGTGCCCCAACAGGTTTGATTTGACAGGCAGTCATTA
TAGTAGTTTCATCTCTCCCAAAAACTCTACTTTATTTGAGACAACTTCTC
AAGATTGACCATCTAGGCTACTAGGCAGGCATCAtacttaaaaatggttt
ttgaATTATACCCATCAAAACAGCAGGGTAAAGATTCCAATTTTATCAAA
CGTACGTGTGTTTATActataataaaattaaaaaaattaagaaagctTAA
ACAAATTTAACGTAGTCataaattaaaaatcagttGTGTTATTGTCATTT
AGGCTATGGAAAGTCAGTTGTTTTCCAAGCAGTGCCGAGGTACTTTGAGG
AGTTACGTCCAGAGATTAGCAATCCAGTGCTTCTAGTATTTTCACCACTC
ATAGCCTTGATAAACGATCAGATCAAGGCTGCTGGGGATAGCTGTATCAT
GGCTATTTCCTTAGACAAGACTGTAACTGATGAGTGTTATGAAGGTATGT
CTATATTATTTAGATTTAGAATTATTTTACTTAAGATAAGTCTGGTTGTT
AGTATAGACTCTAGATTCATCAACAAAGAAGTACTCTTCTCTTAACTTAG
GGGCCTACTGTAATAAATTAATACTTCGTCCTAAATTGATATTCATATAA
GCCCTACCGTGaacatcaaatgactgaccaatcaaagcagaagaatttca
aaacaaatgaactacgcagctccattcacagctctactctacaatttttg
ttttgattttatatactttgtattttaatgaccgaccaggtcattcattt
gagggctatgcatgttatccTCCACTGATgaaagttacccgatctcacag
taACAATTAGCATGGAGTAACATGGCTTTACTTTCAGGCGACTTCAGATA
AATAACCCCTCGTTTCCTTAAACATTTTGGCAAATAACCCTCAATAACTG
TCATTTGTTTATTACACACCAAAGAGTAGAGCAATAGCAATGTACTATTA
AGTAAGCTGTCAGATAGTACAGCAgtttcattttataatatctctTAAAA
AGTTTTATCTGAATTCAATGTTGTTCCCTCCAAGATATCAAAGCTGGTAC
ATATTCATTGGTGTATGCCTGTCCAGAAGTGTTGGAGACGAAACGTTGGC
GAATGTTGTTTTCTGATTCTGAGTTTGTTGACCGTTGTATAGGAGTCGTA
GTTGATGAAGCACATGTAATGGTTGAATGGTTTGTAGATTATTTTAATCT
TTCGGAAAGGCTTTACCATGTTTTTTTCATGACATTAATGAACCACATTT
TTTTGTCTTCTAAAATTTTACAAACCTCCTGCTCTCTAACACTactaatt
ttctatttttgagtGTCTCTTCATATATTATATGTCAACTAACCAGTCGT
TACACGATTTCACTTAAAACATATTTAACAACCATAGGGGCAAGTCATCA
AATGAATCCACAAAAGCATTCAGAGAAAGCTATTCCAAGATTGTTGAGCT
GCAAAGTCTCTTGTCATCAAAAGCAAGGTTCATGTTGTTCACTGCCACTG
CAACCTCTGCTACTCAGGCCACCATCTTCTCAATGCTAAATCTTCAATCA
AACGATGTGTACTGTGAAATATATCACCCTAACAAAAATAATGTTAGGTA
ATAATTATTTAACTTTGGTATATACAAAATATTCAACTAATTTTCTGATC
TGACATTTTGTGGTTACAGTATAGTAAAATTATAGTTATGATGGATGATA
ATAGAtatttgattataaaaaattaGTAATAGCTCTCTTAGTAGATAATG
TTATTAGAAGAAATTCCTAAACTTTGTCTGTCAGGTTTCAaatcaaatct
ttaaaaagaaatttttttattcacaaGGATTTTTAGACTTCAAGAAAAAG
TACAATGATAAGGCTATCAGTATCACATCATTTTTTGTCAATAGATTCAC
AGTCGAGCAGATTTCAATGGGCAAAGAGGATGGCAGGTATCTTGTCAATT
TCTTTGACTTTATCATGGAAGAAATAATTGCCAAAAAAGAGCATACCTGC
AAAACCATTATATATGTCAACACAAGAAAGGAGGTCAACCTGTTAAATAA
TGGAATGGCCTCTAAACTCGGAGTTGATCTTTTTCTTAGTGGAAAGGAGG
GTAATCCAAGGTACCGCCTTGTTGAAGAGTTCCATGCATATAGTCCACAG
TCAGTAAAAAATCATGTCCTTGCCCAAGCTTCAATCCTTGAAAGTCATCT
ACGTGTCATCATATGCACATCAGCTTTTGGTATGGGGGTCAATGTTAAAG
GTTTTAACCGATGCATCCATTTTGGACCGCCCTCTACGGTTGAATCTTTT
GTTCAGGAGGTTGGCAGAGTTGGTAGAGATGGTTCACCAAGCGAAAGTAT
TTTGATGTTCCATAAAAGTTTGGCAACCCATGCATCGTCTGATATGGTTG
AGTATGCTGGAAGCCATGTTAAGTGTAGGCGGGATTTTTTGATGGTCAAG
TTTCCAGGGACCTACTCGTCTCTTTCTAACTGTACTTGTTGTGATCTTTG
TTCAAATGTCTGTCAATGTAAGGAACCAAATTGTTGTAAGAAATTGAAGC
AACTTAATGTGAATGCTCAAGCTCCTGTAACTGAGCGTAGAAGAAACGTA
TCAATGGCTGAAAGGGATGAACTTAGGGGGTTATTGAATGATTTCCGTAT
GGAGatcttcaataaaaagaaaaatctaaaacagGTATCATTGCCTAACT
TGTTCCATGAGTTCACAGAGTACCATGTGAAGCAAGTTATGGTAAAtgtt
acaaaaattttcaacatccaaGATCTTAAATCTCGTGTTGAGATCTGGCG
GACAAGACATGCAATCGAAGTCTTAAAAATTATAAACTCTGTTTTTCATG
ATATTGAAATAGACCAAATGGAACAGCTAAATCTTGAAGAGGAGCCTCTG
GGGCTTGATGATGCAAGTTTTATGAATGATACCAGATATCAATCTGTGAC
AGACTCACAAGTCAATAGCTATCTTCTTTCTGATTGCACTGATGGCAATA
TTTCGAAACGAACTCTTGAAGATGAAGACTTTTAATTTATACTTACATGT
TTTGTGCACCCCTTTATCagggggttggtctaaaaagcagggttaGCTTG
TGGGGTACCCCTTTTTTGCCCAAATATTTGAAGGCTAGTGCAGGCTAGTG
TTTTAATTTGTTAAAATACAATGTTAGAACCTTTAACAGAAATCTggttt
aaatttaaaatccccAACATTCTAAAACagactcaaaatgaaaatcagac
CAATGGGTTATCTCATAACATCAATGGATAATTTACCTCATACCTATGAT
AACTTTAGGGATTCACACCTTGTAGTTGTAAGGATTACATATCAAGGATA
CATTTATTAATTATAGGTAATCAAAAGGTCTAAGTTCAAATAgtagaaaa
aacaaattttgaccATGTTGTGTtaattcaagttaaatctttggCTACCC
tcctttttagaccaacccattATCAGGTCAGTTATAGTTAAGGAAAGTCC
AAATCATAAAGACAAATTCAATATTGTCATTATTGGAAATAGAGAGAT

Coding sequence (CDS) from alignment at scaffold_160:45497..49244+

>TCONS_00049526 ID=TCONS_00049526|Name=TCONS_00049526|organism=Clytia hemisphaerica|type=CDS|length=9315bp|location=Sequence derived from alignment at scaffold_160:45497..49244+ (Clytia hemisphaerica)
gcGGTGGTTGTTTGTTGGACTTGGTTGCTACTTATTTTCTTGTATAGCAT
GGATGAATCAACTTTGTTGAAGAATTTGGCGTTCCAGTTTGGTATCGAAG
CTTTTCACCAGCCCCAAGTTAATGTTCTGAGGGCATTTTTTAATGGAAAA
CACACATATTTCAGTGCCCCAACAGGCTATGGAAAGTCAGTTGTTTTCCA
AGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAGATTAGCAATCCAG
TGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAACGATCAGATCAAG
GCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAGACAAGACTGTAAC
TGATGAGTGTTATGAAGATATCAAAGCTGGTACATATTCATTGGTGTATG
CCTGTCCAGAAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCTGAT
TCTGAGTTTGTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACATGT
AATGGTTGAATGGGGCAAGTCATCAAATGAATCCACAAAAGCATTCAGAG
AAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGTCATCAAAAGCA
AGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACTCAGGCCACCAT
CTTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTGTGAAATATATC
ACCCTAACAAAAATAATGTTAGATTCACAGTCGAGCAGATTTCAATGGGC
AAAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATCATGGAAGA
AATAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATATGTCAACA
CAAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTAAACTCGGA
GTTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCCTTGT
TGAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCATGTCCTTG
CCCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATATGCACATCA
GCTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGCATCCATTT
TGGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGAGTTG
GTAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATAAAAGTTTG
GCAACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGCCATGTTAA
GTGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCGTCTC
TTTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATGTAAG
GAACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAATGCTCAAGC
TCCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAGGGATGAAC
TTAGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaataaaaagaaa
aatctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTCACAGAGTA
CCATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaacatccaaG
ATCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAATCGAAGTC
TTAAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGACCAAATGGA
ACAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGTTTTA
TGAATGATACCAGATATCAATCTGTGACAGACTCACAAGTCAATAGCTAT
CTTCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACTCTTGAAGA
TGAAGACTTTTAAgcGGTGGTTGTTTGTTGGACTTGGTTGCTACTTATTT
TCTTGTATAGCATGGATGAATCAACTTTGTTGAAGAATTTGGCGTTCCAG
TTTGGTATCGAAGCTTTTCACCAGCCCCAAGTTAATGTTCTGAGGGCATT
TTTTAATGGAAAACACACATATTTCAGTGCCCCAACAGGCTATGGAAAGT
CAGTTGTTTTCCAAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAG
ATTAGCAATCCAGTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAA
CGATCAGATCAAGGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAG
ACAAGACTGTAACTGATGAGTGTTATGAAGATATCAAAGCTGGTACATAT
TCATTGGTGTATGCCTGTCCAGAAGTGTTGGAGACGAAACGTTGGCGAAT
GTTGTTTTCTGATTCTGAGTTTGTTGACCGTTGTATAGGAGTCGTAGTTG
ATGAAGCACATGTAATGGTTGAATGGGGCAAGTCATCAAATGAATCCACA
AAAGCATTCAGAGAAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTT
GTCATCAAAAGCAAGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTA
CTCAGGCCACCATCTTCTCAATGCTAAATCTTCAATCAAACGATGTGTAC
TGTGAAATATATCACCCTAACAAAAATAATGTTAGATTCACAGTCGAGCA
GATTTCAATGGGCAAAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACT
TTATCATGGAAGAAATAATTGCCAAAAAAGAGCATACCTGCAAAACCATT
ATATATGTCAACACAAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGC
CTCTAAACTCGGAGTTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAA
GGTACCGCCTTGTTGAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAA
AATCATGTCCTTGCCCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCAT
CATATGCACATCAGCTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACC
GATGCATCCATTTTGGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAG
GTTGGCAGAGTTGGTAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTT
CCATAAAAGTTTGGCAACCCATGCATCGTCTGATATGGTTGAGTATGCTG
GAAGCCATGTTAAGTGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGG
ACCTACTCGTCTCTTTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGT
CTGTCAATGTAAGGAACCAAATTGTTGTAAGAAATTGAAGCAACTTAATG
TGAATGCTCAAGCTCCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCT
GAAAGGGATGAACTTAGGGGGTTATTGAATGATTTCCGTATGGAGatctt
caataaaaagaaaaatctaaaacagGTATCATTGCCTAACTTGTTCCATG
AGTTCACAGAGTACCATGTGAAGCAAGTTATGGTAAAtgttacaaaaatt
ttcaacatccaaGATCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACA
TGCAATCGAAGTCTTAAAAATTATAAACTCTGTTTTTCATGATATTGAAA
TAGACCAAATGGAACAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGAT
GATGCAAGTTTTATGAATGATACCAGATATCAATCTGTGACAGACTCACA
AGTCAATAGCTATCTTCTTTCTGATTGCACTGATGGCAATATTTCGAAAC
GAACTCTTGAAGATGAAGACTTTTAAgcGGTGGTTGTTTGTTGGACTTGG
TTGCTACTTATTTTCTTGTATAGCATGGATGAATCAACTTTGTTGAAGAA
TTTGGCGTTCCAGTTTGGTATCGAAGCTTTTCACCAGCCCCAAGTTAATG
TTCTGAGGGCATTTTTTAATGGAAAACACACATATTTCAGTGCCCCAACA
GGCTATGGAAAGTCAGTTGTTTTCCAAGCAGTGCCGAGGTACTTTGAGGA
GTTACGTCCAGAGATTAGCAATCCAGTGCTTCTAGTATTTTCACCACTCA
TAGCCTTGATAAACGATCAGATCAAGGCTGCTGGGGATAGCTGTATCATG
GCTATTTCCTTAGACAAGACTGTAACTGATGAGTGTTATGAAGATATCAA
AGCTGGTACATATTCATTGGTGTATGCCTGTCCAGAAGTGTTGGAGACGA
AACGTTGGCGAATGTTGTTTTCTGATTCTGAGTTTGTTGACCGTTGTATA
GGAGTCGTAGTTGATGAAGCACATGTAATGGTTGAATGGGGCAAGTCATC
AAATGAATCCACAAAAGCATTCAGAGAAAGCTATTCCAAGATTGTTGAGC
TGCAAAGTCTCTTGTCATCAAAAGCAAGGTTCATGTTGTTCACTGCCACT
GCAACCTCTGCTACTCAGGCCACCATCTTCTCAATGCTAAATCTTCAATC
AAACGATGTGTACTGTGAAATATATCACCCTAACAAAAATAATGTTAGAT
TCACAGTCGAGCAGATTTCAATGGGCAAAGAGGATGGCAGGTATCTTGTC
AATTTCTTTGACTTTATCATGGAAGAAATAATTGCCAAAAAAGAGCATAC
CTGCAAAACCATTATATATGTCAACACAAGAAAGGAGGTCAACCTGTTAA
ATAATGGAATGGCCTCTAAACTCGGAGTTGATCTTTTTCTTAGTGGAAAG
GAGGGTAATCCAAGGTACCGCCTTGTTGAAGAGTTCCATGCATATAGTCC
ACAGTCAGTAAAAAATCATGTCCTTGCCCAAGCTTCAATCCTTGAAAGTC
ATCTACGTGTCATCATATGCACATCAGCTTTTGGTATGGGGGTCAATGTT
AAAGGTTTTAACCGATGCATCCATTTTGGACCGCCCTCTACGGTTGAATC
TTTTGTTCAGGAGGTTGGCAGAGTTGGTAGAGATGGTTCACCAAGCGAAA
GTATTTTGATGTTCCATAAAAGTTTGGCAACCCATGCATCGTCTGATATG
GTTGAGTATGCTGGAAGCCATGTTAAGTGTAGGCGGGATTTTTTGATGGT
CAAGTTTCCAGGGACCTACTCGTCTCTTTCTAACTGTACTTGTTGTGATC
TTTGTTCAAATGTCTGTCAATGTAAGGAACCAAATTGTTGTAAGAAATTG
AAGCAACTTAATGTGAATGCTCAAGCTCCTGTAACTGAGCGTAGAAGAAA
CGTATCAATGGCTGAAAGGGATGAACTTAGGGGGTTATTGAATGATTTCC
GTATGGAGatcttcaataaaaagaaaaatctaaaacagGTATCATTGCCT
AACTTGTTCCATGAGTTCACAGAGTACCATGTGAAGCAAGTTATGGTAAA
tgttacaaaaattttcaacatccaaGATCTTAAATCTCGTGTTGAGATCT
GGCGGACAAGACATGCAATCGAAGTCTTAAAAATTATAAACTCTGTTTTT
CATGATATTGAAATAGACCAAATGGAACAGCTAAATCTTGAAGAGGAGCC
TCTGGGGCTTGATGATGCAAGTTTTATGAATGATACCAGATATCAATCTG
TGACAGACTCACAAGTCAATAGCTATCTTCTTTCTGATTGCACTGATGGC
AATATTTCGAAACGAACTCTTGAAGATGAAGACTTTTAAgcGGTGGTTGT
TTGTTGGACTTGGTTGCTACTTATTTTCTTGTATAGCATGGATGAATCAA
CTTTGTTGAAGAATTTGGCGTTCCAGTTTGGTATCGAAGCTTTTCACCAG
CCCCAAGTTAATGTTCTGAGGGCATTTTTTAATGGAAAACACACATATTT
CAGTGCCCCAACAGGCTATGGAAAGTCAGTTGTTTTCCAAGCAGTGCCGA
GGTACTTTGAGGAGTTACGTCCAGAGATTAGCAATCCAGTGCTTCTAGTA
TTTTCACCACTCATAGCCTTGATAAACGATCAGATCAAGGCTGCTGGGGA
TAGCTGTATCATGGCTATTTCCTTAGACAAGACTGTAACTGATGAGTGTT
ATGAAGATATCAAAGCTGGTACATATTCATTGGTGTATGCCTGTCCAGAA
GTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCTGATTCTGAGTTTGT
TGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACATGTAATGGTTGAAT
GGGGCAAGTCATCAAATGAATCCACAAAAGCATTCAGAGAAAGCTATTCC
AAGATTGTTGAGCTGCAAAGTCTCTTGTCATCAAAAGCAAGGTTCATGTT
GTTCACTGCCACTGCAACCTCTGCTACTCAGGCCACCATCTTCTCAATGC
TAAATCTTCAATCAAACGATGTGTACTGTGAAATATATCACCCTAACAAA
AATAATGTTAGATTCACAGTCGAGCAGATTTCAATGGGCAAAGAGGATGG
CAGGTATCTTGTCAATTTCTTTGACTTTATCATGGAAGAAATAATTGCCA
AAAAAGAGCATACCTGCAAAACCATTATATATGTCAACACAAGAAAGGAG
GTCAACCTGTTAAATAATGGAATGGCCTCTAAACTCGGAGTTGATCTTTT
TCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCCTTGTTGAAGAGTTCC
ATGCATATAGTCCACAGTCAGTAAAAAATCATGTCCTTGCCCAAGCTTCA
ATCCTTGAAAGTCATCTACGTGTCATCATATGCACATCAGCTTTTGGTAT
GGGGGTCAATGTTAAAGGTTTTAACCGATGCATCCATTTTGGACCGCCCT
CTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGAGTTGGTAGAGATGGT
TCACCAAGCGAAAGTATTTTGATGTTCCATAAAAGTTTGGCAACCCATGC
ATCGTCTGATATGGTTGAGTATGCTGGAAGCCATGTTAAGTGTAGGCGGG
ATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCGTCTCTTTCTAACTGT
ACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATGTAAGGAACCAAATTG
TTGTAAGAAATTGAAGCAACTTAATGTGAATGCTCAAGCTCCTGTAACTG
AGCGTAGAAGAAACGTATCAATGGCTGAAAGGGATGAACTTAGGGGGTTA
TTGAATGATTTCCGTATGGAGatcttcaataaaaagaaaaatctaaaaca
gGTATCATTGCCTAACTTGTTCCATGAGTTCACAGAGTACCATGTGAAGC
AAGTTATGGTAAAtgttacaaaaattttcaacatccaaGATCTTAAATCT
CGTGTTGAGATCTGGCGGACAAGACATGCAATCGAAGTCTTAAAAATTAT
AAACTCTGTTTTTCATGATATTGAAATAGACCAAATGGAACAGCTAAATC
TTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGTTTTATGAATGATACC
AGATATCAATCTGTGACAGACTCACAAGTCAATAGCTATCTTCTTTCTGA
TTGCACTGATGGCAATATTTCGAAACGAACTCTTGAAGATGAAGACTTTT
AAgcGGTGGTTGTTTGTTGGACTTGGTTGCTACTTATTTTCTTGTATAGC
ATGGATGAATCAACTTTGTTGAAGAATTTGGCGTTCCAGTTTGGTATCGA
AGCTTTTCACCAGCCCCAAGTTAATGTTCTGAGGGCATTTTTTAATGGAA
AACACACATATTTCAGTGCCCCAACAGGCTATGGAAAGTCAGTTGTTTTC
CAAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAGATTAGCAATCC
AGTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAACGATCAGATCA
AGGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAGACAAGACTGTA
ACTGATGAGTGTTATGAAGATATCAAAGCTGGTACATATTCATTGGTGTA
TGCCTGTCCAGAAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCTG
ATTCTGAGTTTGTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACAT
GTAATGGTTGAATGGGGCAAGTCATCAAATGAATCCACAAAAGCATTCAG
AGAAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGTCATCAAAAG
CAAGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACTCAGGCCACC
ATCTTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTGTGAAATATA
TCACCCTAACAAAAATAATGTTAGATTCACAGTCGAGCAGATTTCAATGG
GCAAAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATCATGGAA
GAAATAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATATGTCAA
CACAAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTAAACTCG
GAGTTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCCTT
GTTGAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCATGTCCT
TGCCCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATATGCACAT
CAGCTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGCATCCAT
TTTGGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGAGT
TGGTAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATAAAAGTT
TGGCAACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGCCATGTT
AAGTGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCGTC
TCTTTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATGTA
AGGAACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAATGCTCAA
GCTCCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAGGGATGA
ACTTAGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaataaaaaga
aaaatctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTCACAGAG
TACCATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaacatcca
aGATCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAATCGAAG
TCTTAAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGACCAAATG
GAACAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGTTT
TATGAATGATACCAGATATCAATCTGTGACAGACTCACAAGTCAATAGCT
ATCTTCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACTCTTGAA
GATGAAGACTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031419XLOC_031419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049526-exon-scaffold_160-1491911889:45497..45672TCONS_00049526-exon-scaffold_160-1491911889:45497..45672Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1510915933:45497..45672TCONS_00049526-exon-scaffold_160-1510915933:45497..45672Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1575043694:45497..45672TCONS_00049526-exon-scaffold_160-1575043694:45497..45672Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1491911889:45949..46140TCONS_00049526-exon-scaffold_160-1491911889:45949..46140Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1510915933:45949..46140TCONS_00049526-exon-scaffold_160-1510915933:45949..46140Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1575043694:45949..46140TCONS_00049526-exon-scaffold_160-1575043694:45949..46140Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1491911889:46731..46875TCONS_00049526-exon-scaffold_160-1491911889:46731..46875Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1510915933:46731..46875TCONS_00049526-exon-scaffold_160-1510915933:46731..46875Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1575043694:46731..46875TCONS_00049526-exon-scaffold_160-1575043694:46731..46875Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1491911889:47084..47293TCONS_00049526-exon-scaffold_160-1491911889:47084..47293Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1510915933:47084..47293TCONS_00049526-exon-scaffold_160-1510915933:47084..47293Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1575043694:47084..47293TCONS_00049526-exon-scaffold_160-1575043694:47084..47293Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1491911889:47591..49244TCONS_00049526-exon-scaffold_160-1491911889:47591..49244Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1510915933:47591..49244TCONS_00049526-exon-scaffold_160-1510915933:47591..49244Clytia hemisphaericaexon
TCONS_00049526-exon-scaffold_160-1575043694:47591..49244TCONS_00049526-exon-scaffold_160-1575043694:47591..49244Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049526-proteinTCONS_00049526-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:45497..49244 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.707619	0.502507	0	0.0511851	0	0	0.664203	5.46516e-09	0.0350033	0.342412	0	0.509496	0	0.0408579	0.00570938	2.77435e-08	0	1.8974e-09	0.126006	3.67155e-07	0	0	0	0	0.191376	0.26525
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR011991WHTH_DNA-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00049526 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.201e-25
Identity = 120/457 (26.26%), Postives = 189/457 (41.36%), Query Frame = 2 
Query:   38 FLYSMDESTLLKNLAFQFGIEAFHQPQVNVLRAFFNGKHTYFSA-PTGYGKSVVFQAVPRYFEELRPEISNPVLLVFSPLIALINDQIKAAGDSCIMAISLDKTVTDECYEDIKAGTYSLVYACPEVLETKRWRMLFSDSEFVDRCIGVVVDEAHVMVEWGKSSNESTKAFRESYSKIVELQSLLSSKARFMLFXXXXXXXXXXXIFSMLNLQSNDVYCEIYHPNKNNVRFTVEQISMGKEDGRYLVNFFDFIMEEIIAKKEHTCKTIIYVNTRKEVNLLNNGMASKLGVDLFLSGKEGNPRYRLVEEFHAYSPQSVKNHVLAQASILESHLRVIICTSAFGMGVNVKGFNRCIHFGPPSTVESFVQEVGRVGRDGSPSESILMF-------HKSLATHASSD------------MVEYAGSHVKCRRDFLMVKF------PGTYSSLSNCTCCDLC 1330
            FL+       +  L   FG  +F   Q  V+ +    +    +   TGYGKS+ FQ  P Y           + LV SPLI+L+ DQ+     S I A  L    ++    DIK G Y +VY  PE         L    E       + VDEAH + EWG         FR+S+ K+  L++ L      +  TATA+S+ +  I   LNL++  + C  +  ++ N+   V      ++ G  L +   F+++   +  E    TIIY  +RK    +  G   KL +                  +HA    S +  +      +   ++ +I T AFGMG+N     + IH+G P  +ES+ QE+GR GRDG  S   +++       ++ L T   ++            M +Y  S  +CRR  ++  F        +   +    CCD C
Sbjct:  527 FLWPAPNEEQVTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYV--------GKIGLVISPLISLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKLGKYRIVYVTPEYCSGNMG--LLQQLEADIGITLIAVDEAHCISEWGHD-------FRDSFRKLGSLKTALPM-VPIVALTATASSSIREDIVRCLNLRNPQITCTGF--DRPNLYLEVR-----RKTGNILQDLQPFLVK-TSSHWEFEGPTIIYCPSRKMTQQVT-GELRKLNLS--------------CGTYHAGMSFSTRKDI--HHRFVRDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSS-RCRRQIILSHFEDKQVQKASLGIMGTEKCCDNC 939
The following BLAST results are available for this feature:
BLAST of TCONS_00049526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN2.201e-2526.26Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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