|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049525 ID=TCONS_00049525|Name=TCONS_00049525|organism=Clytia hemisphaerica|type=transcript|length=2679bp
atttttttcatgagtttcaaaattgaagcGGTGGTTGTTTGTTGGACTTG
GTTGCTACTTATTTTCTTGTATAGCATGGATGAATCAACTTTGTTGAAGA
ATTTGGCGTTCCAGTTTGGTATCGAAGCTTTTCACCAGCCCCAAGTTAAT
GTTCTGAGGGCATTTTTTAATGGAAAACACACATATTTCAGTGCCCCAAC
AGGTTTGATTTGACAGGCAGTCATTATAGTAGTTTCATCTCTCCCAAAAA
CTCTACTTTATTTGAGACAACTTCTCAAGATTGACCATCTAGGCTACTAG
GCAGGCATCAtacttaaaaatggtttttgaATTATACCCATCAAAACAGC
AGGGTAAAGATTCCAATTTTATCAAACGTACGTGTGTTTATActataata
aaattaaaaaaattaagaaagctTAAACAAATTTAACGTAGTCataaatt
aaaaatcagttGTGTTATTGTCATTTAGGCTATGGAAAGTCAGTTGTTTT
CCAAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAGATTAGCAATC
CAGTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAACGATCAGATC
AAGGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAGACAAGACTGT
AACTGATGAGTGTTATGAAGATATCAAAGCTGGTACATATTCATTGGTGT
ATGCCTGTCCAGAAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCT
GATTCTGAGTTTGTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACA
TGTAATGGTTGAATGGGGCAAGTCATCAAATGAATCCACAAAAGCATTCA
GAGAAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGTCATCAAAA
GCAAGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACTCAGGCCAC
CATCTTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTGTGAAATAT
ATCACCCTAACAAAAATAATGTTAGATTCACAGTCGAGCAGATTTCAATG
GGCAAAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATCATGGA
AGAAATAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATATGTCA
ACACAAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTAAACTC
GGAGTTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCCT
TGTTGAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCATGTCC
TTGCCCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATATGCACA
TCAGCTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGCATCCA
TTTTGGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGAG
TTGGTAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATAAAAGT
TTGGCAACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGCCATGT
TAAGTGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCGT
CTCTTTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATGT
AAGGAACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAATGCTCA
AGCTCCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAGGGATG
AACTTAGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaataaaaag
aaaaatctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTCACAGA
GTACCATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaacatcc
aaGATCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAATCGAA
GTCTTAAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGACCAAAT
GGAACAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGTT
TTATGAATGATACCAGATATCAATCTGTGACAGACTCACAAGTCAATAGC
TATCTTCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACTCTTGA
AGATGAAGACTTTTAATTTATACTTACATGTTTTGTGCACCCCTTTATCa
gggggttggtctaaaaagcagggttaGCTTGTGGGGTACCCCTTTTTTGC
CCAAATATTTGAAGGCTAGTGCAGGCTAGTGTTTTAATTTGTTAAAATAC
AATGTTAGAACCTTTAACAGAAATCTggtttaaatttaaaatccccAACA
TTCTAAAACagactcaaaatgaaaatcagacCAATGGGTTATCTCATAAC
ATCAATGGATAATTTACCTCATACCTATGATAACTTTAGGGATTCACACC
TTGTAGTTGTAAGGATTACATATCAAGGATACATTTATTAATTATAGGTA
ATCAAAAGGTCTAAGTTCAAATAgtagaaaaaacaaattttgaccATGTT
GTGTtaattcaagttaaatctttggCTACCCtcctttttagaccaaccca
ttATCAGGTCAGTTATAGTTAAGGAAAGTCCAAATCATAAAGACAAATTC
AATATTGTCATTATTGGAAATAGAGAGAT Run BLAST on NCBI transcript from alignment at scaffold_160:45471..49244+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049525 ID=TCONS_00049525|Name=TCONS_00049525|organism=Clytia hemisphaerica|type=transcript|length=3774bp|location=Sequence derived from alignment at scaffold_160:45471..49244+ (Clytia hemisphaerica)
atttttttcatgagtttcaaaattgaagcGGTGGTTGTTTGTTGGACTTG
GTTGCTACTTATTTTCTTGTATAGCATGGATGAATCAACTTTGTTGAAGA
ATTTGGCGTTCCAGTTTGGTATCGAAGCTTTTCACCAGCCCCAAGTTAAT
GTTCTGAGGGCATTTTTTAATGGAAAACACACATATTTCAGTGCCCCAAC
AGGTTTGATTTGACAGGCAGTCATTATAGTAGTTTCATCTCTCCCAAAAA
CTCTACTTTATTTGAGACAACTTCTCAAGATTGACCATCTAGGCTACTAG
GCAGGCATCAtacttaaaaatggtttttgaATTATACCCATCAAAACAGC
AGGGTAAAGATTCCAATTTTATCAAACGTACGTGTGTTTATActataata
aaattaaaaaaattaagaaagctTAAACAAATTTAACGTAGTCataaatt
aaaaatcagttGTGTTATTGTCATTTAGGCTATGGAAAGTCAGTTGTTTT
CCAAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAGATTAGCAATC
CAGTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAACGATCAGATC
AAGGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAGACAAGACTGT
AACTGATGAGTGTTATGAAGGTATGTCTATATTATTTAGATTTAGAATTA
TTTTACTTAAGATAAGTCTGGTTGTTAGTATAGACTCTAGATTCATCAAC
AAAGAAGTACTCTTCTCTTAACTTAGGGGCCTACTGTAATAAATTAATAC
TTCGTCCTAAATTGATATTCATATAAGCCCTACCGTGaacatcaaatgac
tgaccaatcaaagcagaagaatttcaaaacaaatgaactacgcagctcca
ttcacagctctactctacaatttttgttttgattttatatactttgtatt
ttaatgaccgaccaggtcattcatttgagggctatgcatgttatccTCCA
CTGATgaaagttacccgatctcacagtaACAATTAGCATGGAGTAACATG
GCTTTACTTTCAGGCGACTTCAGATAAATAACCCCTCGTTTCCTTAAACA
TTTTGGCAAATAACCCTCAATAACTGTCATTTGTTTATTACACACCAAAG
AGTAGAGCAATAGCAATGTACTATTAAGTAAGCTGTCAGATAGTACAGCA
gtttcattttataatatctctTAAAAAGTTTTATCTGAATTCAATGTTGT
TCCCTCCAAGATATCAAAGCTGGTACATATTCATTGGTGTATGCCTGTCC
AGAAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCTGATTCTGAGT
TTGTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACATGTAATGGTT
GAATGGTTTGTAGATTATTTTAATCTTTCGGAAAGGCTTTACCATGTTTT
TTTCATGACATTAATGAACCACATTTTTTTGTCTTCTAAAATTTTACAAA
CCTCCTGCTCTCTAACACTactaattttctatttttgagtGTCTCTTCAT
ATATTATATGTCAACTAACCAGTCGTTACACGATTTCACTTAAAACATAT
TTAACAACCATAGGGGCAAGTCATCAAATGAATCCACAAAAGCATTCAGA
GAAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGTCATCAAAAGC
AAGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACTCAGGCCACCA
TCTTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTGTGAAATATAT
CACCCTAACAAAAATAATGTTAGGTAATAATTATTTAACTTTGGTATATA
CAAAATATTCAACTAATTTTCTGATCTGACATTTTGTGGTTACAGTATAG
TAAAATTATAGTTATGATGGATGATAATAGAtatttgattataaaaaatt
aGTAATAGCTCTCTTAGTAGATAATGTTATTAGAAGAAATTCCTAAACTT
TGTCTGTCAGGTTTCAaatcaaatctttaaaaagaaatttttttattcac
aaGGATTTTTAGACTTCAAGAAAAAGTACAATGATAAGGCTATCAGTATC
ACATCATTTTTTGTCAATAGATTCACAGTCGAGCAGATTTCAATGGGCAA
AGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATCATGGAAGAAA
TAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATATGTCAACACA
AGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTAAACTCGGAGT
TGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCCTTGTTG
AAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCATGTCCTTGCC
CAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATATGCACATCAGC
TTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGCATCCATTTTG
GACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGAGTTGGT
AGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATAAAAGTTTGGC
AACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGCCATGTTAAGT
GTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCGTCTCTT
TCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATGTAAGGA
ACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAATGCTCAAGCTC
CTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAGGGATGAACTT
AGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaataaaaagaaaaa
tctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTCACAGAGTACC
ATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaacatccaaGAT
CTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAATCGAAGTCTT
AAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGACCAAATGGAAC
AGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGTTTTATG
AATGATACCAGATATCAATCTGTGACAGACTCACAAGTCAATAGCTATCT
TCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACTCTTGAAGATG
AAGACTTTTAATTTATACTTACATGTTTTGTGCACCCCTTTATCaggggg
ttggtctaaaaagcagggttaGCTTGTGGGGTACCCCTTTTTTGCCCAAA
TATTTGAAGGCTAGTGCAGGCTAGTGTTTTAATTTGTTAAAATACAATGT
TAGAACCTTTAACAGAAATCTggtttaaatttaaaatccccAACATTCTA
AAACagactcaaaatgaaaatcagacCAATGGGTTATCTCATAACATCAA
TGGATAATTTACCTCATACCTATGATAACTTTAGGGATTCACACCTTGTA
GTTGTAAGGATTACATATCAAGGATACATTTATTAATTATAGGTAATCAA
AAGGTCTAAGTTCAAATAgtagaaaaaacaaattttgaccATGTTGTGTt
aattcaagttaaatctttggCTACCCtcctttttagaccaacccattATC
AGGTCAGTTATAGTTAAGGAAAGTCCAAATCATAAAGACAAATTCAATAT
TGTCATTATTGGAAATAGAGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049525-exon-scaffold_160-1491911889:45471..46140 | TCONS_00049525-exon-scaffold_160-1491911889:45471..46140 | Clytia hemisphaerica | exon |
| TCONS_00049525-exon-scaffold_160-1510915933:45471..46140 | TCONS_00049525-exon-scaffold_160-1510915933:45471..46140 | Clytia hemisphaerica | exon |
| TCONS_00049525-exon-scaffold_160-1575043694:45471..46140 | TCONS_00049525-exon-scaffold_160-1575043694:45471..46140 | Clytia hemisphaerica | exon |
| TCONS_00049525-exon-scaffold_160-1491911889:46731..46875 | TCONS_00049525-exon-scaffold_160-1491911889:46731..46875 | Clytia hemisphaerica | exon |
| TCONS_00049525-exon-scaffold_160-1510915933:46731..46875 | TCONS_00049525-exon-scaffold_160-1510915933:46731..46875 | Clytia hemisphaerica | exon |
| TCONS_00049525-exon-scaffold_160-1575043694:46731..46875 | TCONS_00049525-exon-scaffold_160-1575043694:46731..46875 | Clytia hemisphaerica | exon |
| TCONS_00049525-exon-scaffold_160-1491911889:47084..47293 | TCONS_00049525-exon-scaffold_160-1491911889:47084..47293 | Clytia hemisphaerica | exon |
| TCONS_00049525-exon-scaffold_160-1510915933:47084..47293 | TCONS_00049525-exon-scaffold_160-1510915933:47084..47293 | Clytia hemisphaerica | exon |
| TCONS_00049525-exon-scaffold_160-1575043694:47084..47293 | TCONS_00049525-exon-scaffold_160-1575043694:47084..47293 | Clytia hemisphaerica | exon |
| TCONS_00049525-exon-scaffold_160-1491911889:47591..49244 | TCONS_00049525-exon-scaffold_160-1491911889:47591..49244 | Clytia hemisphaerica | exon |
| TCONS_00049525-exon-scaffold_160-1510915933:47591..49244 | TCONS_00049525-exon-scaffold_160-1510915933:47591..49244 | Clytia hemisphaerica | exon |
| TCONS_00049525-exon-scaffold_160-1575043694:47591..49244 | TCONS_00049525-exon-scaffold_160-1575043694:47591..49244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_160 | supercontig | scaffold_160:45471..49244 + |
Blast
BLAST of TCONS_00049525 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 1.619e-23 Identity = 111/410 (27.07%), Postives = 173/410 (42.20%), Query Frame = 1
Query: 478 GYGKSVVFQAVPRYFEELRPEISNPVLLVFSPLIALINDQIKAAGDSCIMAISLDKTVTDECYEDIKAGTYSLVYACPEVLETKRWRMLFSDSEFVDRCIGVVVDEAHVMVEWGKSSNESTKAFRESYSKIVELQSLLSSKARFMLFXXXXXXXXXXXIFSMLNLQSNDVYCEIYHPNKNNVRFTVEQISMGKEDGRYLVNFFDFIMEEIIAKKEHTCKTIIYVNTRKEVNLLNNGMASKLGVDLFLSGKEGNPRYRLVEEFHAYSPQSVKNHVLAQASILESHLRVIICTSAFGMGVNVKGFNRCIHFGPPSTVESFVQEVGRVGRDGSPSESILMF-------HKSLATHASSD------------MVEYAGSHVKCRRDFLMVKF------PGTYSSLSNCTCCDLC 1632
GYGKS+ FQ P Y + LV SPLI+L+ DQ+ S I A L ++ DIK G Y +VY PE L E + VDEAH + EWG FR+S+ K+ L++ L + TATA+S+ + I LNL++ + C + ++ N+ V ++ G L + F+++ + E TIIY +RK + G KL + +HA S + + + ++ +I T AFGMG+N + IH+G P +ES+ QE+GR GRDG S +++ ++ L T ++ M +Y S +CRR ++ F + + CCD C
Sbjct: 574 GYGKSLCFQYPPVYV--------GKIGLVISPLISLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKLGKYRIVYVTPEYCSGNMG--LLQQLEADIGITLIAVDEAHCISEWGHD-------FRDSFRKLGSLKTALP-MVPIVALTATASSSIREDIVRCLNLRNPQITCTGF--DRPNLYLEVR-----RKTGNILQDLQPFLVK-TSSHWEFEGPTIIYCPSRKMTQQVT-GELRKLNLS--------------CGTYHAGMSFSTRKDI--HHRFVRDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSS-RCRRQIILSHFEDKQVQKASLGIMGTEKCCDNC 939
The following BLAST results are available for this feature:
|
