XLOC_003448 (gene) - C. hemisphaerica

Overview
NameXLOC_003448
Unique NameXLOC_003448
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000062:165484..174911-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003448 ID=XLOC_003448|Name=XLOC_003448|organism=Clytia hemisphaerica|type=gene|length=9428bp|location=Sequence derived from alignment at sc0000062:165484..174911- (Clytia hemisphaerica)
GAAAATAATGGATTTAAAAAACCTGATAGGTCACACAAGAAAAATGAAAA ACACCTCAAAATATTTTGGTTATAAAACGCGGAAGATTGTACAAATACAA ATGCCAAATGGTAAAAAAAGCAGTCAATCAAATGCAAAATGGTACCTCCA CGGCTCCAGTCTACCATTTTGAATTTTCAATCAAAACAGAGGTAAATAGA TTGTTCATTTATTGGATAGACCATTAAATAATTAATAGCTTTTATTTATA AGATTGTATACCCACGTGATTGAATTCAATTCTTTTTTTCAGATTTGAAA CACTTCAAAACACCCAATAATTCACTGATTGACGTTTTTTGAGGTATTCA CCGTGATTTTTGTATTCAACATTGAAGATTGATTTCACCGCCTTTCAACC AAATGAGTAAGAACTGTTCTTCTCCTTTGGGAGTTCTTTTTATACAGGAA TTCTTATTTGACGTAACAAAATGGCTCAAAAAAAGCATCTTATATTCGCA ATTTTTCGATTCCAACAGCAAAGTTAAAATCAAAATTCGAAAATTTGTCC TCCCAATAAAATCTTATCGTGTCTTGACCTAGGCAGATAATATTGAATCT TTTAGATCTTTTATTTTTCTTAGAAAATAAAACTCAAAATTTTCAGCAAA CGCTCTCAGAGACGGAGAGCAGTTTTTAGTTCTCCATCTGAGTGACATTT CATTGCTGTTGTTCCTTTTTGTACAATTTTTTTTCTAGCTTTCCCATGGC AAGGAAAGAGTGATCAGCTTAGTCTGTTTACAGTGCAAATACTTGAAAGG AGTGCAGCAGTAACTAAAGTAATTTCGTTTGAAAAGAGAAGTCGAGAATA CAATATTTTGAAAAATCCAAACTTAACGACTAACTTTGGCAATAAACGCT TACAACTTTGACTGAAAAGCGTCGTAAATTCATTGTGAAATCAATCGTAA ATCATATACAAAATGCCTCGAAGATTTGTAAGAGAGTCGAAATTTCGTCA TGTTTTTGGTGAAACGTACAAACGAGATCTGTGTTACGAGAATTTGAATA TTACGAAAAACGTTTGGGATGGTGGGCGTTATTGTGATGTGAACTCGAAA TTTGTTGCTGTGGTATTGGACAGTAATAGCGGAAGCACCTTCGTTGTATT GCCTATTGAAAAGGTAAGGTTACTTAACTATTTCACTTCTCTGTCGCCAG ATTTGCTTTGACCCTAGCGAGTACCTCACTAAAAACCGGGATTTTTCATC CCGTTTCTTAGCGAGTTCCACTTTGACGATTTTTGAATAATAGAAAGCTT TCAAGTGCTTTGACGCAAATTCGATTTTTTCGCTACTGCAGGAGCTTCGA AAGTTCAAAATGACGTCAAAAAATCGAATGTTTGGAGTCCGGAAACCTGG AAAAGACGTTATATGCGTAGAAAAAACGCGGTTGACGTCTAGTATAGGCT ACTTTGACCCCTACTTTTTGCGGGAAAACTAGCTTGAATTATCTCTCGTC CCAACTAAGATGTAGATGAGACAAAATTGATTTATGAATTATTCTTCCTG TTTCATGTACCTCGAAAAATATCTGGAATAAAAAGTTATACCTTAAGCCT ATTTTAGGCGCAATCAATCTTTCTAGCTTTGCCGATTTCTTTTTATTGTC AAGCAAAAAACTCTCAGATTTTTTGGCTAAGGATTACATAGGCACAAGGC ATCTAGAACTCAAATGGAATCATCCATACCCACTACCAATGGTTTTAGAG GTGGCTTTCGAAGGGGTTGTGAAATTTCATTTTTGATAAGTTTTGATACA GCGGAGTCTCTATAACTCAAACGTGCAAGGGGGAAACAAATTTGTTCAAA TTAAGGAAATTTCGAATTATGGAGTACGGTTTTTTAAAGACATTGTTAAC TGAAAGGACGCATAAAACTTGTTGCGAGTTAAGGAGGTATTCGAGTTAAA AAGGTTCGAGTTTTCAAGTTGGAGACTGTACTGTAATATATGATTTCAAA ATATTCGCGTTCAAATTCTTCCTGTTTTTGCTAGTTGTGGTGTGTTTTCA TTGATTCGGTTTGTCTTTATTTATTTATTTATTTGCTTGTTAGTTAAACT TGAAATGAACTAGAATGAAGAAAAACATTTCGCTTCGATTCGCCAAAATA AGTGTACTTTGGTGGAATTTTGATATTCCAGTAAAATTTTAGGACGGGGT TTAATCTGTCACAAAGGATACCTTTTTAAGTGAGGAACACATTAAACTCT CACCACTTCCACTCTTTGCTTTTAACAATCCAATATCTCATCGATTATAG AGTATAAACTTTTGAACGTCACTGAAAAGTTGAAACAGAACGTATGGATA TTCAAGTGTCTATTATCTTTTTTAGACGGGACGCATCGATTCCAACATAT CGAAATTTGAAGGACACAAAGGAAAAGTATTGGATTTACAATTTAATCCA TTCAATGCAAATGTGTTGGCTTCAGCTGGTGAAGATGGAAGAATCAAGGT TAGTATGTATCTCCCATACAACAGGGCCCACGTCATTGACCCACTATATT TTTGGCCCCTCCGCTTTCCAAATCATGATGTAGACCCCCATAAAACGTCT CTTTAACGTCCATCTAACGCCCATCTAACGTCCACAACATGAACATTAGC GAATTTATGTGTCTGTGTTTTTCTGCGACGGAGACATTAAATTTCTATTA TTTCCTAATCCGGATTGACTGATGACGATGGTAAATCAGCATAATTACCG TCCTCGATTTTGTGGGTCAGAACAGCGGGTTGTTCCAAATCGCTTCTGTC ATTCCGCTGTACTCAAAAAGTGCAAATACATAAACTCGCTATTGAACGTT AAACGTTAAATTATAAAACCCTAGATACTGCAATTAGTCACTATTGAAAA AATTTCAATGCCTGGACCGTCTTAAACTGCTTTCAAAAAACCTTTGAAGA GATTCCACGTTTGCATTTGAATACCTCTAAATGAATAATTACCTTGTTTA GACAGTTTGACGTCACATTTTACCCATACAAATGACTAATTTATGTTATG ACCTCATCAGTGAATGTCAGAGAACTTTTTACATTGACTCAGAATGTTTA TCCCTTCGCTCAAGACACAACACGTTTTTTATAAGAACTTCTAAAAAATG AACCCTTCGGATGTTCTTAAACTTCTTAGAGTTTTAAGCCCATAAATGTT CTTAAATTTTTCTTATTTTCACTATTTGTGAGTATTTTTGTGCAAATTCT CAAGAAAATGGGTGTTTTCTTAAAATGTTCTTAACTTGCTCTTAATATTT TGACCATCATAGCTTTTCGTTCTTATATGGCCTGCTCTTATAGAAAGAAC TTCCACACTAATATCCTCCAGTCTACTTCGTCGGTGGATTGGATAAGATT AGAAAAAGAGCATCGACCTATTTTAAAGATATTTCACAGTGTCTCAAGAT AGCCACCTCCTTTTATAATGTCAGTATTTTAACAGAGTAGCTTATTAGAA AAGCCTGGATTACCAAAATATAACTTTACCCCGGATTTAACCTTTATTGA AAAAGCGTATCCACGAAGGTTGATAGTTTTACATATAACTTATGAACATG AATGAATAAAAATTTCTTATTTTCTTTATCCGCAGATCTGGAATTGCCCC GATGGTGGTATCACTGAAAATCTATCANCTCTACTCTAGATATTTTATTT TTTACTAAATTAGCCAAATAAGTCTAACCCAGATTTAACTTTTATTGAAT AAGCGTATCCACAAATGATTGATTGATTCACATAGCACTTAAAAACTTGA ATAAATAAAAACTTCATTCTTATTTTCTTTATCCGCAGATCTGGAATTGC CCCGACGGTGGTATTACTGAAAATCGATCGGAAACATTATGCGATTTAAT TGGTCATCGAAAGAAAGTCGGTATCATCCAATGGCACCCATCGGCCGATA ACGTCCTTGCAAGTGCCGGTTTCGACTATGACATTATTGTTTGGGATGTT GAAAAAGCGAGTCCAGTCCGTGTTATCTCGTGTCATAGTGACGTCATCAA CTCAATGTGTTGGAATTTTGATGGTTCATTCCTGGCAACTTCAAGTAAAG ATAAGAAAGTGAGAGTTATCGACCCAAGAAAGACAGAAGTCGAGGAACAA ATCGTACACGTAAGTCTGCATGCTTTTCTTTGCGATTGTATGATTTTTCC TGTATATGATTACAGTTTTCTTGATTCTTTTATTTTTCATACTTAGCGTA CTTTCCTTCACAAGGTTGGGTTTTTATTAAGACGAAATTTTTCAATTCGC GTTAATAAAATGACTAGTAATATTCGTGTAATAAGGTATTAGATTCTTGG CAAAGCGTGCATTTTTTAATATAAGATCGCATTGGGCTTTTCCAGAAAAA AACCGTATAGCCCTGTTGAGGATGTCCATCCCTCTGTGGCTGGAAATTCT GTAACCCCCTGAAATTCCAGGCAATTTCAGGTTTAAACCCCTCTGGAATT CTGAATTTTAGTAAGATTTAAAAAGCTACCTCCATGGAATTCCAGTTATT TTTGACCGAATTTTGTATCTCCTTATGGAATTCCGCCACATATCAAACCA AACCCCCTTGGAACGAAAATGGACCTCCTCAACAGAGGGTATACGGTTTT TTTCTGGAACAGCCCATTGAATTTATCTTTTCTAGGAATTCAATGCTCAT AAAGGGTCCAAACCAGTTCGTGTACATTTTGTGGATGAAAAACGTGTAGT TACCATCGGTACTCAACGATCTGCTGCACGTGAAATCCTACTGTGGAATC TTGTAAGCTTTTTTCGAATTATTTATCTGATATACATATATTATTATGAA ATGTTAGTATTTTTAATCAGTGTTAAAAGTTCTCCCGTTTTATAAGGATT TCCGTCTCAGTGAAGTATAGAGGCTTTCCCGTCTCAGAATTCAGCATAAT TCGCCAAAAGTTCTAAGAATTATTAGCCTATACTAGACGTTACCCGCGCT TTTTCTACGCAATTAACGTCTATTCCACTTTGCGACTTTTTCGAATGTTT TGAGCCCAGGTTTTCGGGCTCCAAACATTCGATTTTTTGACGTCACTTTT AACTTTTGAAGACCTTGCAGTAAGGAAAAATCGAACTTGCGTCAAAACAC TTGAACGGCTTCTATTATTCAAAAATCATCAAAGTGGAACTCACTAAGAA ACGGGATAACAAATCTCGGTTTTTAGTTAGATACTCGCTAAAGAATTATG TGCTTATTTCAAAGTGTAAACTCCATTTTCCGTCTCATACAAAAAATATT GCTTCAACCACACTGTTTAATGAATTTTAGATGGTTTGGAAAATTTCGGA AATTTGGGATTTTTATAGAGATTTCTGAAAAGTGTCCGAGTGATTTAATC CTCCAAAAGTTACGTTATGGACATAAGCTAGTCAAACAGCTAGCCAGTTT GATTCGATTCAATTGAACTTACAGTTGACTCTCTCTAATTCGATCTTCAA GGGATCAATCGATTCTTCGATTTAGAGAAAGATGCGAACTATAGAGAGTA GTTTAACCACTTTTCTAGCTGAAAGGGCCAGCATTCTAGTTCGAATTACG TAAAAATTTGAACAATATTATATGTTCGAATTAGAGAGAGTTGACTGTGT CTTTATTTGAAACTATTTCCAGGACAATGTAGAGGAGCCCATCACACAAC ATGAATTAGATGATGGTTCGGGAAACCTTCTCACTGTTTACGATGCCTTC CTTAATATTCTTTACGTTGCTGCAAAGGTTTGTTTGTTTTATCCCTCATT AACCTTTCTTGAAAACATTTTCTCACGACTTTTCAAATTAAAGATCAAAT TCGATAAATTTTATATTTAGACAGTCAGAGAATTGAGAAAATGATATTTG CTCATTCAGACATTTACACAAACCTCTTGTCTTCTTTATTCAGTGTCATA AATACGTCACTAATTTGGCTGTTCCATTTAATACCCATTCAAACAGGGGG TAGCTAGACGAACTTTTTCAAGCTAAAAGAATTCTTGAAATAGTGGGACA GCCATTTGGAAAATAGTAAATTTGCAAAAAGCCCCCCTCCCAAGGCACTA AGTGATATCGTACCAGAGGAACGAGGCTATATAAAAAGAAAAAAATATAG ATTTAAAAGAAATTTCTTCCTTGGAAATCCCCCTGGAAATGTCCATTTTC CCCATGTAAGGATATAGAACCGAATAGTCCATTGGGCTTTTCCAGAAAAA AACCGTGTATCACCTGTTGAGGAGGTCCAACCTTTTGTGAACTACCCCTT GGAATTCCAGGCAATTTCAGGATCATACCCTCTGGAATTCCGAATTTTTA CAAATTTTCAATCATTACCCCCTTGGAATTCCGCTTATTTTTGACGGATT TTCGTCTACCCTTATGGAATTCCACTGCATTTCAAACCTTAACCCCTTGG AACGGAAATGGACTTCCTCAACAGGGTTGCACGATTTTTTTCTGGAAAAG CCCATTTTGTGTACCTTATGAAACCACGCAAATTGAATGTCAACTTATTT TAACAATACAGGGTGATTGCACCATCAAATACTTTGAAATCAGCAAAGAA ACACCTTACGTCCATTACTTAAGTCAATACCAATCAACTACCCCTCAACG TGGTTTTGGTGTATTACCTAAACGAGCTGTAAAAGTCAATAAGTGCGAAG TATTCCGTTTTTACAAAATGGATTCAAAGAATTTGATTGAGCCAATCTCT ATGGTAGTTCCAAGAAAGGTAAAATGATTTATGAATTTACGTTTTGGGAA GTGGTATATTATATGTATATTTCTATTTTTTACTTGAACTGACCATTCAT GTTTCTTATTTGAAAATAATTGATATTTCTTTATGTAACACCCATTAGCA ACACGATAGAATGGTACTTTGACTTTACTTTAGAATTCCATTTTAACGTG GGTTGTAGCATAGTATAAGAAAGCCGCGGCTTTCTTATACTATGGTTGTA GATACTCTTCAAAAGTCACACCCCTGTCTCACAGCCCCGGTGGAACTTTT TTCCTAAGTGGGGATAAAAATTCCTATTGAAATCCTAGGGGGGGATAGAA ATTCTATTGTTCCAAGGTTAAAAAAACCAGTGGGATGGTTTGGAGTGCAA TTTTTAAACATGGAATTTCGAGTGGGGATGAAATCAAAGTCGATTTCCCA GTGGGGCTGAAATTCAAGGGTATTTTCCCATCAGGGACGAAATTTTTGCT TAAATCCAGTTGGGCTAGGGTCTCACAGAGCCTGTGACACAGGGGTGTAA AGTCATTTAAAAAGCTAAACTAAAGATCTTTTGACAAAAACCTATATGTT GAAGATAAGTTAATGCGATATTCTCTCTTTCCCAATTTTATTTTTTCTTT GATTTTCAGTCTGATACTTTCCAACAAGATATCTATCCCAAAGTTCCAGG TGACACTTCCGCATTGAAGGCGGATGATTGGTTTAGCGGACAGAACGCTG ATCCGGTCTTGATCTCATTAAAAGATGGTTTTGTGGCGACAAAGAAAGAA TTTATTGCAGTCAATACACATCAGGAGGAAAATATTTTTGATGTCGGTTT GAAACAAGCTCCTGCTCGAGAAGAAGACGTGAGAATTTTTTCCCTCTTTT ACTCCCCGGTGTAATACACTTATAGCGAGTTTATGTATCGGAGAAAATCG AGGGTGACGGTAAGGGAAGTCGACGCAGAACAAAGTCGATAGTTGATATG TACTTAAAATAGACGACGGTATTTTGGTGTTTTTACCATCGTTGAGCAAA GAAGACGGCCATTTTGGTGATATGTCAACCATCTCCTTCGATTTGCCTCG AATACATAAACTCGCTAATCTTACCGTAATAATGGTTATACTTACAAAAA AGTCCGTTCAACTATAAAACCATATATGTCACAAATTTGGAATTTGTTTG TACAAATTGTAGAAATTAATTGTTGTACTTATTTATAAATTAGATATCTC AACTTTGGCAAAAATATTTGGATGATAGTTCCAGGACAAGAGAAGGATTC CACATGCGTAATATTTCAAACCATCTGATTATCTCTTTAAAGCGAATGGT CTGTAGTCCAAATTTCAGTCNTTTCAAACCATCTGATTATCTCTTTAAAG CGAATGGTCTGTATTCCAAATTTCAGTCTTAATACTTTTGTTTTCCCTTA CTTTACAGTTGAAGAAATCGTTTTACGCTCAACAAGATGAATTATCGAAA CTACGTGAATTGTTGAAAGGGAAAGAATTAAAGATTCGACAATTGGAATA TGAGAACAAATCGTTGAAAAAGAAGAAATNAAGAATTGAAGATTCGACAA TTGGAATATGAGAACAAATCGTTGAAAAAGAAGCCACGTGACGAAGAAGA AGAAGAACAAACTACCGACACCACAACTATAACCAATCAGGTGGAGATTA TCGTTACTGGTGGTGGTGTTGAGTAAATAACCATCATGAGTCCGTATAAA AAATCCTGGTCTGGAAGCTTATTGTTTTAATAACTTTTTGTTAGCTTTTT CCTTTTGTGTATTAGTGAAGTTACGGTAGAATCACGACGACGAACGAAAA TTTAACAGGCTAGTGAGTTTCAACCAATCATATTTCGTATTTTCACTAGC CTATTACATTTTTCGACCGTGCGTCGTGATTATCGTGGCATGCTTAAACT CAGTATTAGTATTATCAAATGATAAAATCGATTTGTCCAGTTTTTGATCA TGTAGTACTCCTCTTGGAATTGGTTCAACATGATCAAAAAGGGAGCAAAA CATACTGATTTCTCAACGCAAGTTCAATCAAGAAACAAACGGCTTCCAGA CCGGGGTTTTCTATACTGACTATGATACTATGATACTATGGGAGAACTGG ATAATTTGTAAATTTATGGAATAATGACAATATTTTGATAAAGACATTGA ATTAATTTTTCTGATAATATTAGATATCGTTTGAGATTGAACTGTATGGA CCTAAGAATCGAGAACTGTAAACCTATACCATGGTCCTAGTTTAGGATTG ACACAGCTGGCTAAACGACATTATTTCAACATCCATGTATCAGTACCGTT TATTTCGATGTGGATGGAAGCATTTGGACGTTTTGTGTCAACTATGGTGA GATGTGAAGAGATTTTGCTTTGAGCCATATTTGATGCTTTTCAAAATATT AATTAATCTTGATCACTTTATGGTGACCATCAATTTTGATTCTCAACTGC CAACCATTTCATAGGTCAAAGGAAAGGTAAACTCAACCAGGAAATTCTTA GTCATTATTCTAGAAGAAATGTAATTATCTTAAAATCTGTATCTTAGAAA ATCTATAGATTGCAATTATTTCTATCATTTAGATTGTACGTGAAGTCATA TTTATCCTTGCATTACAGACAATTTAGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006051TCONS_00006051Clytia hemisphaericatranscript
TCONS_00006050TCONS_00006050Clytia hemisphaericatranscript
TCONS_00006049TCONS_00006049Clytia hemisphaericatranscript
TCONS_00006048TCONS_00006048Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006049-proteinTCONS_00006049-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:165484..174911 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
CORO1Bcoronin-1B Homo Sapiens
CORO1Ccoronin-1C isoform a Homo Sapiens
CORO1APREDICTED: coronin-1A isoform X1 Homo Sapiens
CORO2Acoronin-2A Homo Sapiens
CORO2Bcoronin-2B isoform 1 Homo Sapiens
CORO6PREDICTED: coronin-6 isoform X2 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.56 0.66 0.36 0.27 0.82 0.27 1.01 0.95 5.54 2.52 5.74 6.87 41.39 34.8 61.72 68.35 22.6 25.18 9.41 12.76 39.54 37.09 13.96 19.58 22.44 27.63 9.24 4.75 0.68 0.99