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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006050 ID=TCONS_00006050|Name=TCONS_00006050|organism=Clytia hemisphaerica|type=transcript|length=625bp
ATTGAAGATTGATTTCACCGCCTTTCAACCAAATGActtTCCCATGGCAA
GGAAAGAGTGATCAGCTTAGTCTGTTTACAGTGCAAATACTTGAAAGGAG
TGCAGCAGTAACTAAAGTaatttcgtttgaaaagagaAGTCGAGaataca
atattttgaaaaatccaaacttAACGACTAACTTTGGCAATAAACGCTTA
CAACTTTGACTGAAAAGCGTCGTAAATTCATTGTGAAATCAATCGTAAAT
CATATACAAAATGCCTCGAAGATTTGTAAGAGAGTCGAAATTTCGTCATG
TTTTTGGTGAAACGTACAAACGAGATCTGTGTTACGAGAATTTGAATATT
ACGAAAAACGTTTGGGATGGTGGGCGTTATTGTGATGTGAACTCGAAATT
TGTTGCTGTGGTATTGGACAGTAATAGCGGAAGCACCTTCGTTGTATTGC
CTATTGAAAAGACGGGACGCATCGATTCCAACATATCGAAATTTGAAGGA
CACAAAGGAAAAGTATTGGATTTACAATTTAATCCATTCAATGCAAATGT
GTTGGCTTCAGCTGGTGAAGATGGAAGAATCAAGATCTGGAATTGCCCCG
ATGGTGGTATCACTGAAAATCTATC Run BLAST on NCBI transcript from alignment at sc0000062:171236..174541- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006050 ID=TCONS_00006050|Name=TCONS_00006050|organism=Clytia hemisphaerica|type=transcript|length=3306bp|location=Sequence derived from alignment at sc0000062:171236..174541- (Clytia hemisphaerica)
ATTGAAGATTGATTTCACCGCCTTTCAACCAAATGAGTAAGAACTGTTCT
TCTCCTTTGGGAGTTCTTTTTATACAGGAATTCTTATTTGACGTAACAAA
ATGGCTCAAAAAAAGCATCTTATATTCGCAATTTTTCGATTCCAACAGCA
AAGTTAAAATCAAAATTCGAAAATTTGTCCTCCCAATAAAATCTTATCGT
GTCTTGACCTAGGCAGATAATATTGAATCTTTTAGATCTTTTATTTTTCT
TAGAAAATAAAACTCAAAATTTTCAGCAAACGCTCTCAGAGACGGAGAGC
AGTTTTTAGTTCTCCATCTGAGTGACATTTCATTGCTGTTGTTCCTTTTT
GTACAATTTTTTTTCTAGCTTTCCCATGGCAAGGAAAGAGTGATCAGCTT
AGTCTGTTTACAGTGCAAATACTTGAAAGGAGTGCAGCAGTAACTAAAGT
AATTTCGTTTGAAAAGAGAAGTCGAGAATACAATATTTTGAAAAATCCAA
ACTTAACGACTAACTTTGGCAATAAACGCTTACAACTTTGACTGAAAAGC
GTCGTAAATTCATTGTGAAATCAATCGTAAATCATATACAAAATGCCTCG
AAGATTTGTAAGAGAGTCGAAATTTCGTCATGTTTTTGGTGAAACGTACA
AACGAGATCTGTGTTACGAGAATTTGAATATTACGAAAAACGTTTGGGAT
GGTGGGCGTTATTGTGATGTGAACTCGAAATTTGTTGCTGTGGTATTGGA
CAGTAATAGCGGAAGCACCTTCGTTGTATTGCCTATTGAAAAGGTAAGGT
TACTTAACTATTTCACTTCTCTGTCGCCAGATTTGCTTTGACCCTAGCGA
GTACCTCACTAAAAACCGGGATTTTTCATCCCGTTTCTTAGCGAGTTCCA
CTTTGACGATTTTTGAATAATAGAAAGCTTTCAAGTGCTTTGACGCAAAT
TCGATTTTTTCGCTACTGCAGGAGCTTCGAAAGTTCAAAATGACGTCAAA
AAATCGAATGTTTGGAGTCCGGAAACCTGGAAAAGACGTTATATGCGTAG
AAAAAACGCGGTTGACGTCTAGTATAGGCTACTTTGACCCCTACTTTTTG
CGGGAAAACTAGCTTGAATTATCTCTCGTCCCAACTAAGATGTAGATGAG
ACAAAATTGATTTATGAATTATTCTTCCTGTTTCATGTACCTCGAAAAAT
ATCTGGAATAAAAAGTTATACCTTAAGCCTATTTTAGGCGCAATCAATCT
TTCTAGCTTTGCCGATTTCTTTTTATTGTCAAGCAAAAAACTCTCAGATT
TTTTGGCTAAGGATTACATAGGCACAAGGCATCTAGAACTCAAATGGAAT
CATCCATACCCACTACCAATGGTTTTAGAGGTGGCTTTCGAAGGGGTTGT
GAAATTTCATTTTTGATAAGTTTTGATACAGCGGAGTCTCTATAACTCAA
ACGTGCAAGGGGGAAACAAATTTGTTCAAATTAAGGAAATTTCGAATTAT
GGAGTACGGTTTTTTAAAGACATTGTTAACTGAAAGGACGCATAAAACTT
GTTGCGAGTTAAGGAGGTATTCGAGTTAAAAAGGTTCGAGTTTTCAAGTT
GGAGACTGTACTGTAATATATGATTTCAAAATATTCGCGTTCAAATTCTT
CCTGTTTTTGCTAGTTGTGGTGTGTTTTCATTGATTCGGTTTGTCTTTAT
TTATTTATTTATTTGCTTGTTAGTTAAACTTGAAATGAACTAGAATGAAG
AAAAACATTTCGCTTCGATTCGCCAAAATAAGTGTACTTTGGTGGAATTT
TGATATTCCAGTAAAATTTTAGGACGGGGTTTAATCTGTCACAAAGGATA
CCTTTTTAAGTGAGGAACACATTAAACTCTCACCACTTCCACTCTTTGCT
TTTAACAATCCAATATCTCATCGATTATAGAGTATAAACTTTTGAACGTC
ACTGAAAAGTTGAAACAGAACGTATGGATATTCAAGTGTCTATTATCTTT
TTTAGACGGGACGCATCGATTCCAACATATCGAAATTTGAAGGACACAAA
GGAAAAGTATTGGATTTACAATTTAATCCATTCAATGCAAATGTGTTGGC
TTCAGCTGGTGAAGATGGAAGAATCAAGGTTAGTATGTATCTCCCATACA
ACAGGGCCCACGTCATTGACCCACTATATTTTTGGCCCCTCCGCTTTCCA
AATCATGATGTAGACCCCCATAAAACGTCTCTTTAACGTCCATCTAACGC
CCATCTAACGTCCACAACATGAACATTAGCGAATTTATGTGTCTGTGTTT
TTCTGCGACGGAGACATTAAATTTCTATTATTTCCTAATCCGGATTGACT
GATGACGATGGTAAATCAGCATAATTACCGTCCTCGATTTTGTGGGTCAG
AACAGCGGGTTGTTCCAAATCGCTTCTGTCATTCCGCTGTACTCAAAAAG
TGCAAATACATAAACTCGCTATTGAACGTTAAACGTTAAATTATAAAACC
CTAGATACTGCAATTAGTCACTATTGAAAAAATTTCAATGCCTGGACCGT
CTTAAACTGCTTTCAAAAAACCTTTGAAGAGATTCCACGTTTGCATTTGA
ATACCTCTAAATGAATAATTACCTTGTTTAGACAGTTTGACGTCACATTT
TACCCATACAAATGACTAATTTATGTTATGACCTCATCAGTGAATGTCAG
AGAACTTTTTACATTGACTCAGAATGTTTATCCCTTCGCTCAAGACACAA
CACGTTTTTTATAAGAACTTCTAAAAAATGAACCCTTCGGATGTTCTTAA
ACTTCTTAGAGTTTTAAGCCCATAAATGTTCTTAAATTTTTCTTATTTTC
ACTATTTGTGAGTATTTTTGTGCAAATTCTCAAGAAAATGGGTGTTTTCT
TAAAATGTTCTTAACTTGCTCTTAATATTTTGACCATCATAGCTTTTCGT
TCTTATATGGCCTGCTCTTATAGAAAGAACTTCCACACTAATATCCTCCA
GTCTACTTCGTCGGTGGATTGGATAAGATTAGAAAAAGAGCATCGACCTA
TTTTAAAGATATTTCACAGTGTCTCAAGATAGCCACCTCCTTTTATAATG
TCAGTATTTTAACAGAGTAGCTTATTAGAAAAGCCTGGATTACCAAAATA
TAACTTTACCCCGGATTTAACCTTTATTGAAAAAGCGTATCCACGAAGGT
TGATAGTTTTACATATAACTTATGAACATGAATGAATAAAAATTTCTTAT
TTTCTTTATCCGCAGATCTGGAATTGCCCCGATGGTGGTATCACTGAAAA
TCTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006050-exon-sc0000062-1575043694:174506..174541 | TCONS_00006050-exon-sc0000062-1575043694:174506..174541 | Clytia hemisphaerica | exon |
| TCONS_00006050-exon-sc0000062-1575043694:173749..174173 | TCONS_00006050-exon-sc0000062-1575043694:173749..174173 | Clytia hemisphaerica | exon |
| TCONS_00006050-exon-sc0000062-1575043694:172414..172536 | TCONS_00006050-exon-sc0000062-1575043694:172414..172536 | Clytia hemisphaerica | exon |
| TCONS_00006050-exon-sc0000062-1575043694:171236..171276 | TCONS_00006050-exon-sc0000062-1575043694:171236..171276 | Clytia hemisphaerica | exon |
| TCONS_00006050-exon-sc0000062-1510915933:174506..174541 | TCONS_00006050-exon-sc0000062-1510915933:174506..174541 | Clytia hemisphaerica | exon |
| TCONS_00006050-exon-sc0000062-1510915933:173749..174173 | TCONS_00006050-exon-sc0000062-1510915933:173749..174173 | Clytia hemisphaerica | exon |
| TCONS_00006050-exon-sc0000062-1510915933:172414..172536 | TCONS_00006050-exon-sc0000062-1510915933:172414..172536 | Clytia hemisphaerica | exon |
| TCONS_00006050-exon-sc0000062-1510915933:171236..171276 | TCONS_00006050-exon-sc0000062-1510915933:171236..171276 | Clytia hemisphaerica | exon |
| TCONS_00006050-exon-sc0000062-1491911889:174506..174541 | TCONS_00006050-exon-sc0000062-1491911889:174506..174541 | Clytia hemisphaerica | exon |
| TCONS_00006050-exon-sc0000062-1491911889:173749..174173 | TCONS_00006050-exon-sc0000062-1491911889:173749..174173 | Clytia hemisphaerica | exon |
| TCONS_00006050-exon-sc0000062-1491911889:172414..172536 | TCONS_00006050-exon-sc0000062-1491911889:172414..172536 | Clytia hemisphaerica | exon |
| TCONS_00006050-exon-sc0000062-1491911889:171236..171276 | TCONS_00006050-exon-sc0000062-1491911889:171236..171276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:171236..174541 - |
Blast
BLAST of TCONS_00006050 vs. Swiss-Prot (Human)
Match: COR1A (Coronin-1A OS=Homo sapiens GN=CORO1A PE=1 SV=4) HSP 1 Score: 128.257 bits (321), Expect = 1.904e-34 Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = 3
Query: 261 MPRRFVRESKFRHVFGETYKRDLCYENLNITKNVWDGGRYCDVNSKFVAVVLDSNSGSTFVVLPIEKTGRIDSNISKFEGHKGKVLDLQFNPFNANVLASAGEDGRIKIWNCPDGGITENL 623
M R+ VR SKFRHVFG+ K D CYE++ +++ WD G +C VN KFVA++ +++ G F+VLP+ KTGR+D N GH VLD+ + P N NV+AS ED + +W PDGG+ L
Sbjct: 1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSG-FCAVNPKFVALICEASGGGAFLVLPLGKTGRVDKNAPTVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLMLPL 120
The following BLAST results are available for this feature:
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