TCONS_00006049-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006049-protein
Unique NameTCONS_00006049-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006049-protein ID=TCONS_00006049-protein|Name=TCONS_00006049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp
MPRRFVRESKFRHVFGETYKRDLCYENLNITKNVWDGGRYCDVNSKFVAV
VLDSNSGSTFVVLPIEKTGRIDSNISKFEGHKGKVLDLQFNPFNANVLAS
AGEDGRIKIWNCPDGGITENRSETLCDLIGHRKKVGIIQWHPSADNVLAS
AGFDYDIIVWDVEKASPVRVISCHSDVINSMCWNFDGSFLATSSKDKKVR
VIDPRKTEVEEQIVHEFNAHKGSKPVRVHFVDEKRVVTIGTQRSAAREIL
LWNLDNVEEPITQHELDDGSGNLLTVYDAFLNILYVAAKGDCTIKYFEIS
KETPYVHYLSQYQSTTPQRGFGVLPKRAVKVNKCEVFRFYKMDSKNLIEP
ISMVVPRKSDTFQQDIYPKVPGDTSALKADDWFSGQNADPVLISLKDGFV
ATKKEFIAVNTHQEENIFDVGLKQAPAREEDLKKSFYAQQDELSKLRELL
KGKELKIRQLEYENKSLKKKKXRIEDSTIGI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003448XLOC_003448Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006049TCONS_00006049Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015048DUF1899
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 473..477
NoneNo IPR availableCOILSCoilCoilcoord: 443..471
NoneNo IPR availableSMARTSM01167DUF1900_2coord: 260..395
e-value: 1.1E-68
score: 244.2
NoneNo IPR availablePFAMPF16300WD40_4coord: 348..390
e-value: 9.8E-19
score: 66.9
NoneNo IPR availableGENE3D1.10.10.670coord: 107..131
e-value: 1.6E-5
score: 24.2
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 164..203
e-value: 1.2E-8
score: 44.7
coord: 71..111
e-value: 6.1E-8
score: 42.4
coord: 210..253
e-value: 140.0
score: 3.5
coord: 121..161
e-value: 2.1E-4
score: 30.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 74..111
e-value: 1.5E-5
score: 25.5
coord: 166..203
e-value: 2.1E-6
score: 28.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 171..212
score: 9.807
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 78..111
score: 13.349
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 128..170
score: 12.346
IPR015048Domain of unknown function DUF1899SMARTSM01166DUF1899_3coord: 4..69
e-value: 7.6E-29
score: 111.8
IPR015048Domain of unknown function DUF1899PFAMPF08953DUF1899coord: 4..70
e-value: 3.2E-25
score: 87.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 132..466
e-value: 2.0E-24
score: 85.9
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 34..106
e-value: 4.7E-10
score: 38.3
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 148..162
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 98..112
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 78..212
score: 25.971
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 59..306

Blast
[Close]
BLAST of TCONS_00006049-protein vs. Swiss-Prot (Human)
Match: COR2B (Coronin-2B OS=Homo sapiens GN=CORO2B PE=1 SV=4)

HSP 1 Score: 439.884 bits (1130), Expect = 1.961e-151
Identity = 209/468 (44.66%), Postives = 321/468 (68.59%), Query Frame = 0 
Query:    7 RESKFRHVFGETYKRDLCYENLNITKNVWDGGRYCDVNSKFVAVVLDSNSGSTFVVLPIEKTGRIDSNISKFEGHKGKVLDLQFNPFNANVLASAGEDGRIKIWNCPDGGITENRSETLCDLIGHRKKVGIIQWHPSADNVLASAGFDYDIIVWDVEKASPVRVISCHSDVINSMCWNFDGSFLATSSKDKKVRVIDPRKTEVEEQIVHEFNAHKGSKPVRVHFV-DEKRVVTIGTQRSAAREILLWNLDNVEEPITQHELDDGSGNLLTVYDAFLNILYVAAKGDCTIKYFEISKETPYVHYLSQYQSTTPQRGFGVLPKRAVKVNKCEVFRFYKMDS-KNLIEPISMVVPRKSDTFQQDIYPKVPGDTSALKADDWFSGQNADPVLISLKDGFVATKKEFIAVNTHQEENIFDVG---LKQAPAR-EEDLKKSFYAQQDELSKLRELLKGKELKIRQLEYENKSLK 468
            R SKFR+V+G+   R+ C++ + ITKNV D   +C VN++F+A+V +S  G +F+V+P+E+TGRI+ N  K  GH+G VLD+++NPF  N++AS  ED  ++IW  P+GG+  N +E L +L GH ++VG+++WHP+ +N+L SAG+DY +++W+++   PV++I CH+DVI  M +N DGS L T+ KDKK+RVI+PR      +++ E N  K  +  RV F+ + KR++T G  R   R+I LW+ +++  P+ + E+D  SG L   YDA  ++LY+A KGD  I+Y+EIS E PY+ YL +++S  PQ+G GV+PK  + V+ CEVFRFYK+ + K LIEPISM+VPR+SD++Q+DIYP  PG   AL  D+W  G N DPVL+SLK+G+  + K        +++++   G   L+  P R E +L + F+ QQDE+ +L+E L  K+++IRQL+ E K+L+
Sbjct:   13 RSSKFRNVYGKVANREHCFDGIPITKNVHDN-HFCAVNTRFLAIVTESAGGGSFLVIPLEQTGRIEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPEGGLKRNMTEALLELHGHSRRVGLVEWHPTTNNILFSAGYDYKVLIWNLDVGEPVKMIDCHTDVILCMSFNTDGSLLTTTCKDKKLRVIEPRSG----RVLQEANC-KNHRVNRVVFLGNMKRLLTTGVSRWNTRQIALWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEISTEKPYLSYLMEFRSPAPQKGLGVMPKHGLDVSACEVFRFYKLVTLKGLIEPISMIVPRRSDSYQEDIYPMTPGTEPALTPDEWLGGINRDPVLMSLKEGYKKSSKMVFKAPIKEKKSVVVNGIDLLENVPPRTENELLRMFFRQQDEIRRLKEELAQKDIRIRQLQLELKNLR 474
The following BLAST results are available for this feature:
BLAST of TCONS_00006049-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COR2B1.961e-15144.66Coronin-2B OS=Homo sapiens GN=CORO2B PE=1 SV=4[more]
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