|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006051 ID=TCONS_00006051|Name=TCONS_00006051|organism=Clytia hemisphaerica|type=transcript|length=615bp
TAATTCACTGATTGACGTTTTTTGAGcttTCCCATGGCAAGGAAAGAGTG
ATCAGCTTAGTCTGTTTACAGTGCAAATACTTGAAAGGAGTGCAGCAGTA
ACTAAAGTaatttcgtttgaaaagagaAGTCGAGaatacaatattttgaa
aaatccaaacttAACGACTAACTTTGGCAATAAACGCTTACAACTTTGAC
TGAAAAGCGTCGTAAATTCATTGTGAAATCAATCGTAAATCATATACAAA
ATGCCTCGAAGATTTGTAAGAGAGTCGAAATTTCGTCATGTTTTTGGTGA
AACGTACAAACGAGATCTGTGTTACGAGAATTTGAATATTACGAAAAACG
TTTGGGATGGTGGGCGTTATTGTGATGTGAACTCGAAATTTGTTGCTGTG
GTATTGGACAGTAATAGCGGAAGCACCTTCGTTGTATTGCCTATTGAAAA
GACGGGACGCATCGATTCCAACATATCGAAATTTGAAGGACACAAAGGAA
AAGTATTGGATTTACAATTTAATCCATTCAATGCAAATGTGTTGGCTTCA
GCTGGTGAAGATGGAAGAATCAAGATCTGGAATTGCCCCGATGGTGGTAT
CACTGAAAATCTATC Run BLAST on NCBI transcript from alignment at sc0000062:171236..174594- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006051 ID=TCONS_00006051|Name=TCONS_00006051|organism=Clytia hemisphaerica|type=transcript|length=3359bp|location=Sequence derived from alignment at sc0000062:171236..174594- (Clytia hemisphaerica)
TAATTCACTGATTGACGTTTTTTGAGGTATTCACCGTGATTTTTGTATTC
AACATTGAAGATTGATTTCACCGCCTTTCAACCAAATGAGTAAGAACTGT
TCTTCTCCTTTGGGAGTTCTTTTTATACAGGAATTCTTATTTGACGTAAC
AAAATGGCTCAAAAAAAGCATCTTATATTCGCAATTTTTCGATTCCAACA
GCAAAGTTAAAATCAAAATTCGAAAATTTGTCCTCCCAATAAAATCTTAT
CGTGTCTTGACCTAGGCAGATAATATTGAATCTTTTAGATCTTTTATTTT
TCTTAGAAAATAAAACTCAAAATTTTCAGCAAACGCTCTCAGAGACGGAG
AGCAGTTTTTAGTTCTCCATCTGAGTGACATTTCATTGCTGTTGTTCCTT
TTTGTACAATTTTTTTTCTAGCTTTCCCATGGCAAGGAAAGAGTGATCAG
CTTAGTCTGTTTACAGTGCAAATACTTGAAAGGAGTGCAGCAGTAACTAA
AGTAATTTCGTTTGAAAAGAGAAGTCGAGAATACAATATTTTGAAAAATC
CAAACTTAACGACTAACTTTGGCAATAAACGCTTACAACTTTGACTGAAA
AGCGTCGTAAATTCATTGTGAAATCAATCGTAAATCATATACAAAATGCC
TCGAAGATTTGTAAGAGAGTCGAAATTTCGTCATGTTTTTGGTGAAACGT
ACAAACGAGATCTGTGTTACGAGAATTTGAATATTACGAAAAACGTTTGG
GATGGTGGGCGTTATTGTGATGTGAACTCGAAATTTGTTGCTGTGGTATT
GGACAGTAATAGCGGAAGCACCTTCGTTGTATTGCCTATTGAAAAGGTAA
GGTTACTTAACTATTTCACTTCTCTGTCGCCAGATTTGCTTTGACCCTAG
CGAGTACCTCACTAAAAACCGGGATTTTTCATCCCGTTTCTTAGCGAGTT
CCACTTTGACGATTTTTGAATAATAGAAAGCTTTCAAGTGCTTTGACGCA
AATTCGATTTTTTCGCTACTGCAGGAGCTTCGAAAGTTCAAAATGACGTC
AAAAAATCGAATGTTTGGAGTCCGGAAACCTGGAAAAGACGTTATATGCG
TAGAAAAAACGCGGTTGACGTCTAGTATAGGCTACTTTGACCCCTACTTT
TTGCGGGAAAACTAGCTTGAATTATCTCTCGTCCCAACTAAGATGTAGAT
GAGACAAAATTGATTTATGAATTATTCTTCCTGTTTCATGTACCTCGAAA
AATATCTGGAATAAAAAGTTATACCTTAAGCCTATTTTAGGCGCAATCAA
TCTTTCTAGCTTTGCCGATTTCTTTTTATTGTCAAGCAAAAAACTCTCAG
ATTTTTTGGCTAAGGATTACATAGGCACAAGGCATCTAGAACTCAAATGG
AATCATCCATACCCACTACCAATGGTTTTAGAGGTGGCTTTCGAAGGGGT
TGTGAAATTTCATTTTTGATAAGTTTTGATACAGCGGAGTCTCTATAACT
CAAACGTGCAAGGGGGAAACAAATTTGTTCAAATTAAGGAAATTTCGAAT
TATGGAGTACGGTTTTTTAAAGACATTGTTAACTGAAAGGACGCATAAAA
CTTGTTGCGAGTTAAGGAGGTATTCGAGTTAAAAAGGTTCGAGTTTTCAA
GTTGGAGACTGTACTGTAATATATGATTTCAAAATATTCGCGTTCAAATT
CTTCCTGTTTTTGCTAGTTGTGGTGTGTTTTCATTGATTCGGTTTGTCTT
TATTTATTTATTTATTTGCTTGTTAGTTAAACTTGAAATGAACTAGAATG
AAGAAAAACATTTCGCTTCGATTCGCCAAAATAAGTGTACTTTGGTGGAA
TTTTGATATTCCAGTAAAATTTTAGGACGGGGTTTAATCTGTCACAAAGG
ATACCTTTTTAAGTGAGGAACACATTAAACTCTCACCACTTCCACTCTTT
GCTTTTAACAATCCAATATCTCATCGATTATAGAGTATAAACTTTTGAAC
GTCACTGAAAAGTTGAAACAGAACGTATGGATATTCAAGTGTCTATTATC
TTTTTTAGACGGGACGCATCGATTCCAACATATCGAAATTTGAAGGACAC
AAAGGAAAAGTATTGGATTTACAATTTAATCCATTCAATGCAAATGTGTT
GGCTTCAGCTGGTGAAGATGGAAGAATCAAGGTTAGTATGTATCTCCCAT
ACAACAGGGCCCACGTCATTGACCCACTATATTTTTGGCCCCTCCGCTTT
CCAAATCATGATGTAGACCCCCATAAAACGTCTCTTTAACGTCCATCTAA
CGCCCATCTAACGTCCACAACATGAACATTAGCGAATTTATGTGTCTGTG
TTTTTCTGCGACGGAGACATTAAATTTCTATTATTTCCTAATCCGGATTG
ACTGATGACGATGGTAAATCAGCATAATTACCGTCCTCGATTTTGTGGGT
CAGAACAGCGGGTTGTTCCAAATCGCTTCTGTCATTCCGCTGTACTCAAA
AAGTGCAAATACATAAACTCGCTATTGAACGTTAAACGTTAAATTATAAA
ACCCTAGATACTGCAATTAGTCACTATTGAAAAAATTTCAATGCCTGGAC
CGTCTTAAACTGCTTTCAAAAAACCTTTGAAGAGATTCCACGTTTGCATT
TGAATACCTCTAAATGAATAATTACCTTGTTTAGACAGTTTGACGTCACA
TTTTACCCATACAAATGACTAATTTATGTTATGACCTCATCAGTGAATGT
CAGAGAACTTTTTACATTGACTCAGAATGTTTATCCCTTCGCTCAAGACA
CAACACGTTTTTTATAAGAACTTCTAAAAAATGAACCCTTCGGATGTTCT
TAAACTTCTTAGAGTTTTAAGCCCATAAATGTTCTTAAATTTTTCTTATT
TTCACTATTTGTGAGTATTTTTGTGCAAATTCTCAAGAAAATGGGTGTTT
TCTTAAAATGTTCTTAACTTGCTCTTAATATTTTGACCATCATAGCTTTT
CGTTCTTATATGGCCTGCTCTTATAGAAAGAACTTCCACACTAATATCCT
CCAGTCTACTTCGTCGGTGGATTGGATAAGATTAGAAAAAGAGCATCGAC
CTATTTTAAAGATATTTCACAGTGTCTCAAGATAGCCACCTCCTTTTATA
ATGTCAGTATTTTAACAGAGTAGCTTATTAGAAAAGCCTGGATTACCAAA
ATATAACTTTACCCCGGATTTAACCTTTATTGAAAAAGCGTATCCACGAA
GGTTGATAGTTTTACATATAACTTATGAACATGAATGAATAAAAATTTCT
TATTTTCTTTATCCGCAGATCTGGAATTGCCCCGATGGTGGTATCACTGA
AAATCTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006051-exon-sc0000062-1575043694:174569..174594 | TCONS_00006051-exon-sc0000062-1575043694:174569..174594 | Clytia hemisphaerica | exon |
| TCONS_00006051-exon-sc0000062-1575043694:173749..174173 | TCONS_00006051-exon-sc0000062-1575043694:173749..174173 | Clytia hemisphaerica | exon |
| TCONS_00006051-exon-sc0000062-1575043694:172414..172536 | TCONS_00006051-exon-sc0000062-1575043694:172414..172536 | Clytia hemisphaerica | exon |
| TCONS_00006051-exon-sc0000062-1575043694:171236..171276 | TCONS_00006051-exon-sc0000062-1575043694:171236..171276 | Clytia hemisphaerica | exon |
| TCONS_00006051-exon-sc0000062-1510915933:174569..174594 | TCONS_00006051-exon-sc0000062-1510915933:174569..174594 | Clytia hemisphaerica | exon |
| TCONS_00006051-exon-sc0000062-1510915933:173749..174173 | TCONS_00006051-exon-sc0000062-1510915933:173749..174173 | Clytia hemisphaerica | exon |
| TCONS_00006051-exon-sc0000062-1510915933:172414..172536 | TCONS_00006051-exon-sc0000062-1510915933:172414..172536 | Clytia hemisphaerica | exon |
| TCONS_00006051-exon-sc0000062-1510915933:171236..171276 | TCONS_00006051-exon-sc0000062-1510915933:171236..171276 | Clytia hemisphaerica | exon |
| TCONS_00006051-exon-sc0000062-1491911889:174569..174594 | TCONS_00006051-exon-sc0000062-1491911889:174569..174594 | Clytia hemisphaerica | exon |
| TCONS_00006051-exon-sc0000062-1491911889:173749..174173 | TCONS_00006051-exon-sc0000062-1491911889:173749..174173 | Clytia hemisphaerica | exon |
| TCONS_00006051-exon-sc0000062-1491911889:172414..172536 | TCONS_00006051-exon-sc0000062-1491911889:172414..172536 | Clytia hemisphaerica | exon |
| TCONS_00006051-exon-sc0000062-1491911889:171236..171276 | TCONS_00006051-exon-sc0000062-1491911889:171236..171276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:171236..174594 - |
Blast
BLAST of TCONS_00006051 vs. Swiss-Prot (Human)
Match: COR1A (Coronin-1A OS=Homo sapiens GN=CORO1A PE=1 SV=4) HSP 1 Score: 128.257 bits (321), Expect = 1.742e-34 Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = 2
Query: 251 MPRRFVRESKFRHVFGETYKRDLCYENLNITKNVWDGGRYCDVNSKFVAVVLDSNSGSTFVVLPIEKTGRIDSNISKFEGHKGKVLDLQFNPFNANVLASAGEDGRIKIWNCPDGGITENL 613
M R+ VR SKFRHVFG+ K D CYE++ +++ WD G +C VN KFVA++ +++ G F+VLP+ KTGR+D N GH VLD+ + P N NV+AS ED + +W PDGG+ L
Sbjct: 1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSG-FCAVNPKFVALICEASGGGAFLVLPLGKTGRVDKNAPTVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLMLPL 120
The following BLAST results are available for this feature:
|
