XLOC_000736 (gene) - C. hemisphaerica

Overview
NameXLOC_000736
Unique NameXLOC_000736
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000010:792451..799122+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000736 ID=XLOC_000736|Name=XLOC_000736|organism=Clytia hemisphaerica|type=gene|length=6672bp|location=Sequence derived from alignment at sc0000010:792451..799122+ (Clytia hemisphaerica)
CTCCATCAATCAGCATTCATCTTGTTTATCAATGATTGTTTCTAATCTGT
TCTAATCcaggtaaaaaaaaataaataaaaaaattgaaaacatgtCTGAT
TACAGCAGTTTCGGTTCATCCTCATTGGATTCGCTTTCTTCTTCATCGGG
TTTTGAATCATCACCAAGGTATGGATCAAGTGGTGGTCAACCCTCTTCCT
CACAAATGATGGAAGCAGTCAAACAACAAATAGCTGTTGCTAATGCTCAA
GAACTTCTATCTGTAAGTATTGCACCCAgttaaatgttttattttcaaaa
agagttGAGATATGATTTGGATATATGTTACTTTGCTCTTACGGATATTC
TCTTGGCTTGAATCCAGGGGAGTCATTCCTAGAATTACCTCCCTTCTgtc
ctcttttttctttcatttttgcaACTCTTTTCAGTGTGGTATTTATTACG
AGTCTCCTCAAAAGCTGACCAGGTCACTAAGGCTTGATAGGTGTATTTTT
TTACACGCTTTTTAATAAGAatgattttataagaacacgaggctgaaaat
tgactaaacctaagaacaaataaAGAACAATCTGAgactcagatttcaga
aattactaaaaCAGTACTGAACTTAACAGATTTCAAACctattttaagtt
tttaggTAAAGAAGCTGAGCGTATTAAAAACATTaggagaacatttttaa
gccaaaaaaattaaaaacagccCAGTCTGATTAAAAATTAGCTGGTTCGT
TTCACAATGatcaaaattttctcacaatgttttcattttacaaactatct
tcttattatttattgttatcattttatttttagaaaatgtctGACAAGTG
TTTCAAAAAGTGCATCACAAAACCTGGAGCCAACTTGGATAATTCAGAAC
AGGTAAAGTGAATTTAACATCATTTTCATTGATCACTGTAACgtgcactg
ggctcaacttcagtatagGTGTGAAAGtggaaggcccaattgtaaacact
tttttataaacAGGGACACTTGAGAATAGAGAAGGCTCAATTGTTAATCC
AGGATGATGGGTACTCAGAATAAAGAGAGGGCCTTTGATTGTAAAGTTAG
AATTATGAGTCATAGGGTACTCCGGATTAAGGAAAGCTCAATTATAAAGC
CCACGTGATAGGAGCTTGGGATAAAGGAAGGCTCGGTTGTGAATAAGCAt
acaatgttcttagtcaaattactcaatttttttaagagatagatgtttgt
tttgctcatgagggcttacttttgaagaatatgtatgcttagacatgaaa
ttttggttgcttggcgtgtttttatagaaaaactagccaaatttgatatt
tttttataagcacattatcaattacttaggtattagcttttctcgagatt
ggctctttcattctttatgactttttttttgcacaaagatgcataactat
aaaccctcgaatgtgacggagctcgatttttggagaaaacaaaattttgg
gtaaattttagctaaaaaacggctaagaaaagggttttttggacttcgtt
aaatattggatcgttgtttttttcatgaaagtaggtaaaagatggctcaa
gcagattgttgtaaaaaaaggattttcagctcaaaaaacgcatgtttatc
tataagaatcactattaataagcatacatcaatgttcttagcgccaaatt
tctcaattttttgatgagatagatgtttattttgctcaggaagtcttgaa
tatgaaagaatatttcaagagcatgaaattttggtttctaaacgtttttt
tagaagaaacaaacgactaattttaatacatcgtcactatttgtcttctg
aatgattgttctaacggtcatgctcacgtagatatcaattatatatgtgt
taaatgcataaccagctAGGTCCATAAAAGTTTCACTTGTTTAGTAAATT
Tcggcaaaatctttgaaaaaacgagtccctagggtccatttttcgaacct
cagtggAGCACCCCGTCGGtaggcaagggtagtacccccccccccggagt
tACTCTAATTGCTTCACTTTGCGATCAGTACTGTTTGCGATTGTTCTTTA
AAGAAATCTAATATCTAACCTAGTAACATATTCTTTGAACAAATAAGCAA
TATTTACTTTGCTGGACGGGTAACGTCATGCTTTCCATCTTGTGACTGCA
AATTTATTCATCGTTTTAAatactttgatttttttcctttgTTGAAACTT
TGTTgtaacaaaataacaaatttcACTTTCAGTGTGTTTTGATAGATATT
TATgacaacaaatatttttatagaaaatatatataaatcataaatcattt
TTATAGAAATGTCTTGCGATGTGTATGGACCGCTACATGGAAGCATGGAA
CCTGGTATCACAGACATACACCAATAGACTGAATAAAGAACACAGCATGC
AAGGTGGTAGTGGTAGTGGTGTACCTAGTGCCCtcatgtaaacaaaaaaa
attactgaACTCTTAAATAAAGACTGGAATAGCAGACATCTCATATGctg
ttaaaaatgaaagttaatcTTTGTCTCAAGTAGTAGCCAAATACATGGCA
CAGAATGTACCTTGTCTCAGAATAATAGCCAAGAACTATTAAAATGCATT
CTTTGCACAAAACTATGAAGATAGATATTAATAATACATCCATTCTAATT
CTAGTCCTTCTTTTCGAGCTAGGTAGCAATATGACTTTTTTTAGAAATAG
AGATTAGAAtttattttcctatttttgaGCAATAACATGACTTGAAAATA
AAGACCTAAACTAGACTACGGTTTGCTGAGATAAACtagacttttctttt
ttgtacaTTCCTTATATGAAAACTTGATTTTTAAGTACGCATCCCTTTTT
GGATTATGTTTGCCTTACCAAGAAATAATTACGTTTCcaaaaaaattcca
attttcattttctatagtTTGTTTGTATAATCTCCTAAGTCTTATAAGAT
TTCTTTATCTTATCATAAGAAGGCTTTGTAAATTTTAGTAGttaaacttt
cataaaaaatactatataatttttgctaaaattaaGCCGCCAccagtttt
cttttttcattagGAATTATAAAATTAAGCGAATACCATATAGAATGATT
CTTTTGTTGCTTTTTACACCTGATCTAAGATCGGAGGTCTCTACAATTGG
TGGGGAAGTTtagaaaccacaatcgatttgtaagtgctctaaagtaggtt
tgaagggtagagttttaacgctagacttaagactatctgaggatccaaaa
gttaaaaaatggtccagtagggcttgaaatatagcctagaaaccaataaa
tccctcccagatcgaaataatcgatgaaatcaagttgaaggcccgaaatt
gagattctcgctcgaacttcaattttcgaaaaatggtaaattagccaaaa
gtgccaatatgttatggcactggtTGTAGTTACACTGGTagaattttaat
tcaaattaattatttttaaactcTCACGCTCCGTGATTACAGTATCTTCA
CACGTCAATCTTTAGTTTATTCATTTGAAATCTTCCCGAGGTTGCGAGAG
TTTAGTTACTTTGGAGTAAGCGTCTTGAAACCGAGAGTGTTAAGAAACTA
AGAAGCTAGTTTTCAAGACTATATTTTCCAATTATAATATGCGACCaaat
tttttctctgttttCAGTGTAAGAGAAGTAAAATGGCTAATAAAAGAAAA
CAGAAGACATCAGCTGAGATGAAATCTATTGCAAGCAAAATTATTAAAAT
CGAcgagagaaaagaaaaattagtgCCATTTGATTTTGATGACAATGATT
ACGATGTGATAATTATAACAAGGGAAAATGAGGTTTATCTGCCATCTGGT
TTTGTTAAGATGTTATCTAATGGTAAAGATATCCAATTAAGGGATGGTAG
AATGAATATTGACGCTTCTACTGAATGTTTGGTTCGTTGCTTATCGTTTT
ATGACTTGCGATTTTGGGATGAGACGCAAGTATGTAAGTCTTACATTTTT
CGAATATGTTTGCAACATTTTTATGAATCGAATGTGTGCAGTCACACTCT
GTCTGGATGATGGATTAGCGCATCAAGTAGTCTTGATTTCCCAGATAATA
TAAAATGTTAATATTCATGAGAATGTACATTGAAGAGGAGGCTGAGCTCT
TGCAACCCCCGGTACCCATCATTCCACCACTGCGCTCTCGTACGatcatg
gaaattgcaaaaatttatttatcacGTTGAAATAGCCGAAAATATCCCAA
ATCAAGCATCACGCCAAATAACACAAGAATGTCAATATGAACAATTATCA
ATGTCTTCAATAATTGATCCAATATCATTTACTCGATACATTTGAAACCC
CACTGGCTATGACGTAATAGACGATATCAGAtaaacgtgaaaactcagat
ttgacctccgagaattccccacaatgctttgtgcggaaaaatttcacctt
gaacttttttccgcgcaaagcattgtggacaattctcggaggtcaaatct
gagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ttatttggcacctaagagtaagccgatatcgtctattgtttatcattttg
ttttattcttACAGTTACAGTTCTATTATACTTTCTTTTTTAGTTGAAAA
CCTGAGAGATGTTCTATCGGTcactaaaatgttaaaaatgaaGGGCCTGC
GTGATCATATTGAAAATGAAGAGTTTCTGCCACTCATCCGTGCACCATCG
GTCTCAATACATCTTACTGACTCTTTGCTTGCACATTTGGGAATCGCTCA
TGAATTTGGATTGCATtgttttgtccaaaaaattatGGTCCGAAATGTAC
CCCTTCGCAATTTCAATCTTATCAAGTCACCCAGCTTTAACAGATTGCAT
CGAGATTTGAGATTCgagattttgaaaaacactaTAAATGATCAATTCTC
CGATTCTTCTCATTTCAACCATGAACTGTTGGAAATACAAATCatcttta
acttttttgattttatagttTTTGAGAATCGATCTTTGAATGTAGCACCC
CAGAAAAGTTACGTTGTCTCTCCAGCTATAAACACATCGTGGAATTCTTT
TGAAGAGACTGTTGCGAGAAGATTTATCCCTTATGACAAGGACTTGACAG
ATTCCGTCACTTTGATCGTGGAGAACAAAGAAATCTACGTCAATTCGTAC
CTCTTAACAACAAATTCGCCCGTTTTTAAAGCAATGTTGAACTCTGTGTC
TTTCAAAGAGGGCCAAAGTAAAAGAGTTGAGCTTCCTGGAAAGAAACATT
CTGAAATCTTATTCTTCCTGCATCATTTACAGACACCTCAAGATATTGGA
AATATTATAGGTAAGAATATGCTATTACCTTCAgaatgactttttttaaa
tagcaCCTTGCTTTTTCATAGTATAAACCTTTATCCTGCCTATCTCTATA
GTCCTTTGGTGCTAGAAACCTCATTTTGGGATAATATTGTGATTGGNACC
TATCTCTATAGCCCTTTGGTGCTAGAAACCTCATTTTGGGATAATATTGT
GATTGGAGATTGTTGACCATTCTTAGCCCCCAGCCCCTTGTAGCCCCCCT
CTTGTAACCTAGTTTATGAAAACTGTCCCTAGACTAcctcatttttcatc
tttcagaTTTTCCTGATATTACCATTCTGGCACCCTTATGTCGTGAATAC
CAAGTCGATTGGCTGACCAAGAAAATCAAGGATTTTATAAGAGTCAGAGC
AGCACGACTGAACAAAAAGGGAAGCAAAATTGTTGCTCTTAATTATCTTT
CATTCTCTGAAGAAATAGGTTTCGATGAAAGTAATGATACGCTGTTGGTT
AATTCCTTGTCTTGTGGTTTCCATAGCCTCCAAACATGCTTAGAGTTTTC
AGTGTTGAGTCGCCATAAACAAGTATTGATCGCTAGAAAAAGATTATGGC
TTTTATTACGACACTTTTTTGACAAGTATCGAGATCTGATCCTTAATGAA
GAAGGCTTTGGATTTCTTTCGCTTTTTGAGGAACAAAcggtttttgattt
tcagtacAATAAAACTGAATGTGCTTACATTAAAGAGTTTCAAGAAAAAC
ATGGCAAAGgcgagtgaaatatttttcgtcCATGAAATATCAGAATTCTT
CTTACAGCTTATTCACAATCCTGCAtcatatcttttcaaaattattactt
ttttcaaatCGAAAAGACGAGAGAATAGTATAAACTGTACTACTAGTTGG
AAAAACAAAATTGTCaggaaaatattgacactttaCAAAGCCCGTCACTC
CACCTGATCTGTTATTTTTGTTACCACTGTGAAAATGTACTTTGCCTaca
cgtctttttataagaacatcca
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00001383TCONS_00001383Clytia hemisphaericatranscript
TCONS_00001384TCONS_00001384Clytia hemisphaericatranscript
TCONS_00001385TCONS_00001385Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00001385-proteinTCONS_00001385-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:792451..799122 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
130.33	130.5	70.68	60.45	77.51	63.01	78.23	84.48	85.8	80.81	59.73	65.64	42.6	47.38	52.07	61.72	106.4	90.43	15.12	22.01	67.77	68.04	84.79	72.84	48.81	56.38	45.57	30.35	56.83	50.74