TCONS_00001383 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001383
Unique Name	TCONS_00001383
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	999

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000010:792451..795474+

transcript sequence

>TCONS_00001383 ID=TCONS_00001383|Name=TCONS_00001383|organism=Clytia hemisphaerica|type=transcript|length=999bp
CTCCATCAATCAGCATTCATCTTGTTTATCAATGATTGTTTCTAATCTGT
TCTAATCcaggtaaaaaaaaataaataaaaaaattgaaaacatgtCTGAT
TACAGCAGTTTCGGTTCATCCTCATTGGATTCGCTTTCTTCTTCATCGGG
TTTTGAATCATCACCAAGGTATGGATCAAGTGGTGGTCAACCCTCTTCCT
CACAAATGATGGAAGCAGTCAAACAACAAATAGCTGTTGCTAATGCTCAA
GAACTTCTATCTaaaatgtctGACAAGTGTTTCAAAAAGTGCATCACAAA
ACCTGGAGCCAACTTGGATAATTCAGAACAGAAATGTCTTGCGATGTGTA
TGGACCGCTACATGGAAGCATGGAACCTGGTATCACAGACATACACCAAT
AGACTGAATAAAGAACACAGCATGCAAGGTGGTAGTGGTAGTGGTGTACC
TAGTGCCCtcatgtaaacaaaaaaaattactgaACTCTTAAATAAAGACT
GGAATAGCAGACATCTCATATGctgttaaaaatgaaagttaatcTTTGTC
TCAAGTAGTAGCCAAATACATGGCACAGAATGTACCTTGTCTCAGAATAA
TAGCCAAGAACTATTAAAATGCATTCTTTGCACAAAACTATGAAGATAGA
TATTAATAATACATCCATTCTAATTCTAGTCCTTCTTTTCGAGCTAGGTA
GCAATATGACTTTTTTTAGAAATAGAGATTAGAAtttattttcctatttt
tgaGCAATAACATGACTTGAAAATAAAGACCTAAACTAGACTACGGTTTG
CTGAGATAAACtagacttttcttttttgtacaTTCCTTATATGAAAACTT
GATTTTTAAGTACGCATCCCTTTTTGGATTATGTTTGCCTTACCAAGAAA
TAATTACGTTTCcaaaaaaattccaattttcattttctatagtTTGTTTG
TATAATCTCCTAAGTCTTATAAGATTTCTTTATCTTATCATAAGAAGGC

Run BLAST on NCBI

transcript from alignment at sc0000010:792451..795474+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001383 ID=TCONS_00001383|Name=TCONS_00001383|organism=Clytia hemisphaerica|type=transcript|length=3024bp|location=Sequence derived from alignment at sc0000010:792451..795474+ (Clytia hemisphaerica)
CTCCATCAATCAGCATTCATCTTGTTTATCAATGATTGTTTCTAATCTGT
TCTAATCcaggtaaaaaaaaataaataaaaaaattgaaaacatgtCTGAT
TACAGCAGTTTCGGTTCATCCTCATTGGATTCGCTTTCTTCTTCATCGGG
TTTTGAATCATCACCAAGGTATGGATCAAGTGGTGGTCAACCCTCTTCCT
CACAAATGATGGAAGCAGTCAAACAACAAATAGCTGTTGCTAATGCTCAA
GAACTTCTATCTGTAAGTATTGCACCCAgttaaatgttttattttcaaaa
agagttGAGATATGATTTGGATATATGTTACTTTGCTCTTACGGATATTC
TCTTGGCTTGAATCCAGGGGAGTCATTCCTAGAATTACCTCCCTTCTgtc
ctcttttttctttcatttttgcaACTCTTTTCAGTGTGGTATTTATTACG
AGTCTCCTCAAAAGCTGACCAGGTCACTAAGGCTTGATAGGTGTATTTTT
TTACACGCTTTTTAATAAGAatgattttataagaacacgaggctgaaaat
tgactaaacctaagaacaaataaAGAACAATCTGAgactcagatttcaga
aattactaaaaCAGTACTGAACTTAACAGATTTCAAACctattttaagtt
tttaggTAAAGAAGCTGAGCGTATTAAAAACATTaggagaacatttttaa
gccaaaaaaattaaaaacagccCAGTCTGATTAAAAATTAGCTGGTTCGT
TTCACAATGatcaaaattttctcacaatgttttcattttacaaactatct
tcttattatttattgttatcattttatttttagaaaatgtctGACAAGTG
TTTCAAAAAGTGCATCACAAAACCTGGAGCCAACTTGGATAATTCAGAAC
AGGTAAAGTGAATTTAACATCATTTTCATTGATCACTGTAACgtgcactg
ggctcaacttcagtatagGTGTGAAAGtggaaggcccaattgtaaacact
tttttataaacAGGGACACTTGAGAATAGAGAAGGCTCAATTGTTAATCC
AGGATGATGGGTACTCAGAATAAAGAGAGGGCCTTTGATTGTAAAGTTAG
AATTATGAGTCATAGGGTACTCCGGATTAAGGAAAGCTCAATTATAAAGC
CCACGTGATAGGAGCTTGGGATAAAGGAAGGCTCGGTTGTGAATAAGCAt
acaatgttcttagtcaaattactcaatttttttaagagatagatgtttgt
tttgctcatgagggcttacttttgaagaatatgtatgcttagacatgaaa
ttttggttgcttggcgtgtttttatagaaaaactagccaaatttgatatt
tttttataagcacattatcaattacttaggtattagcttttctcgagatt
ggctctttcattctttatgactttttttttgcacaaagatgcataactat
aaaccctcgaatgtgacggagctcgatttttggagaaaacaaaattttgg
gtaaattttagctaaaaaacggctaagaaaagggttttttggacttcgtt
aaatattggatcgttgtttttttcatgaaagtaggtaaaagatggctcaa
gcagattgttgtaaaaaaaggattttcagctcaaaaaacgcatgtttatc
tataagaatcactattaataagcatacatcaatgttcttagcgccaaatt
tctcaattttttgatgagatagatgtttattttgctcaggaagtcttgaa
tatgaaagaatatttcaagagcatgaaattttggtttctaaacgtttttt
tagaagaaacaaacgactaattttaatacatcgtcactatttgtcttctg
aatgattgttctaacggtcatgctcacgtagatatcaattatatatgtgt
taaatgcataaccagctAGGTCCATAAAAGTTTCACTTGTTTAGTAAATT
Tcggcaaaatctttgaaaaaacgagtccctagggtccatttttcgaacct
cagtggAGCACCCCGTCGGtaggcaagggtagtacccccccccccggagt
tACTCTAATTGCTTCACTTTGCGATCAGTACTGTTTGCGATTGTTCTTTA
AAGAAATCTAATATCTAACCTAGTAACATATTCTTTGAACAAATAAGCAA
TATTTACTTTGCTGGACGGGTAACGTCATGCTTTCCATCTTGTGACTGCA
AATTTATTCATCGTTTTAAatactttgatttttttcctttgTTGAAACTT
TGTTgtaacaaaataacaaatttcACTTTCAGTGTGTTTTGATAGATATT
TATgacaacaaatatttttatagaaaatatatataaatcataaatcattt
TTATAGAAATGTCTTGCGATGTGTATGGACCGCTACATGGAAGCATGGAA
CCTGGTATCACAGACATACACCAATAGACTGAATAAAGAACACAGCATGC
AAGGTGGTAGTGGTAGTGGTGTACCTAGTGCCCtcatgtaaacaaaaaaa
attactgaACTCTTAAATAAAGACTGGAATAGCAGACATCTCATATGctg
ttaaaaatgaaagttaatcTTTGTCTCAAGTAGTAGCCAAATACATGGCA
CAGAATGTACCTTGTCTCAGAATAATAGCCAAGAACTATTAAAATGCATT
CTTTGCACAAAACTATGAAGATAGATATTAATAATACATCCATTCTAATT
CTAGTCCTTCTTTTCGAGCTAGGTAGCAATATGACTTTTTTTAGAAATAG
AGATTAGAAtttattttcctatttttgaGCAATAACATGACTTGAAAATA
AAGACCTAAACTAGACTACGGTTTGCTGAGATAAACtagacttttctttt
ttgtacaTTCCTTATATGAAAACTTGATTTTTAAGTACGCATCCCTTTTT
GGATTATGTTTGCCTTACCAAGAAATAATTACGTTTCcaaaaaaattcca
attttcattttctatagtTTGTTTGTATAATCTCCTAAGTCTTATAAGAT
TTCTTTATCTTATCATAAGAAGGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000736	XLOC_000736	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001383-exon-sc0000010-1491911889:792451..792712	TCONS_00001383-exon-sc0000010-1491911889:792451..792712	Clytia hemisphaerica	exon
TCONS_00001383-exon-sc0000010-1510915933:792451..792712	TCONS_00001383-exon-sc0000010-1510915933:792451..792712	Clytia hemisphaerica	exon
TCONS_00001383-exon-sc0000010-1575043694:792451..792712	TCONS_00001383-exon-sc0000010-1575043694:792451..792712	Clytia hemisphaerica	exon
TCONS_00001383-exon-sc0000010-1491911889:793284..793352	TCONS_00001383-exon-sc0000010-1491911889:793284..793352	Clytia hemisphaerica	exon
TCONS_00001383-exon-sc0000010-1510915933:793284..793352	TCONS_00001383-exon-sc0000010-1510915933:793284..793352	Clytia hemisphaerica	exon
TCONS_00001383-exon-sc0000010-1575043694:793284..793352	TCONS_00001383-exon-sc0000010-1575043694:793284..793352	Clytia hemisphaerica	exon
TCONS_00001383-exon-sc0000010-1491911889:794807..795474	TCONS_00001383-exon-sc0000010-1491911889:794807..795474	Clytia hemisphaerica	exon
TCONS_00001383-exon-sc0000010-1510915933:794807..795474	TCONS_00001383-exon-sc0000010-1510915933:794807..795474	Clytia hemisphaerica	exon
TCONS_00001383-exon-sc0000010-1575043694:794807..795474	TCONS_00001383-exon-sc0000010-1575043694:794807..795474	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000010	supercontig	sc0000010:792451..795474 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
124.215	124.619	67.3919	57.8679	75.9258	62.1902	76.763	83.2614	84.4394	79.9413	57.9986	64.645	40.9074	45.8898	49.5183	59.015	104.533	88.3611	12.7878	20.5843	65.8033	66.8246	80.7119	69.4404	47.0821	54.536	45.1728	29.9773	51.8863	47.4843

Blast

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BLAST of TCONS_00001383 vs. Swiss-Prot (Human)
Match: TIM13 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Homo sapiens GN=TIMM13 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.391e-31
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 2

Query:  206 MMEAVKQQIAVANAQELLSKMSDKCFKKCITKPGANLDNSEQKCLAMCMDRYMEAWNLVSQTYTNRLNKEHS 421
            +ME VK QIAVANAQELL +M+DKCF+KCI KPG +LDNSEQKC+AMCMDRYM+AWN VS+ Y +RL +E +
Sbjct:   22 IMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCIAMCMDRYMDAWNTVSRAYNSRLQRERA 93

The following BLAST results are available for this feature:

BLAST of TCONS_00001383 vs. Swiss-Prot (Human)

BLAST of TCONS_00001383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TIM13	1.391e-31	70.83	Mitochondrial import inner membrane translocase su...	[more]

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TCONS_00001383 (transcript) - C. hemisphaerica