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TCONS_00001385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001385
Unique NameTCONS_00001385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2120

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001385 ID=TCONS_00001385|Name=TCONS_00001385|organism=Clytia hemisphaerica|type=transcript|length=2120bp
caggtaaaaaaaaataaataaaaaaattgaaaacatgtCTGATTACAGCA
GTTTCGGTTCATCCTCATTGGATTCGCTTTCTTCTTCATCGGGTTTTGAA
TCATCACCAAGGTATGGATCAAGTGGTGGTCAACCCTCTTCCTCACAAAT
GATGGAAGCAGTCAAACAACAAATAGCTGTTGCTAATGCTCAAGAACTTC
TATCTaaaatgtctGACAAGTGTTTCAAAAAGTGCATCACAAAACCTGGA
GCCAACTTGGATAATTCAGAACAGAAATGTCTTGCGATGTGTATGGACCG
CTACATGGAAGCATGGAACCTGGTATCACAGACATACACCAATAGACTGA
ATAAAGAACACAGCATGCAAGTGTAAGAGAAGTAAAATGGCTAATAAAAG
AAAACAGAAGACATCAGCTGAGATGAAATCTATTGCAAGCAAAATTATTA
AAATCGAcgagagaaaagaaaaattagtgCCATTTGATTTTGATGACAAT
GATTACGATGTGATAATTATAACAAGGGAAAATGAGGTTTATCTGCCATC
TGGTTTTGTTAAGATGTTATCTAATGGTAAAGATATCCAATTAAGGGATG
GTAGAATGAATATTGACGCTTCTACTGAATGTTTGGTTCGTTGCTTATCG
TTTTATGACTTGCGATTTTGGGATGAGACGCAAGTATTTGAAAACCTGAG
AGATGTTCTATCGGTcactaaaatgttaaaaatgaaGGGCCTGCGTGATC
ATATTGAAAATGAAGAGTTTCTGCCACTCATCCGTGCACCATCGGTCTCA
ATACATCTTACTGACTCTTTGCTTGCACATTTGGGAATCGCTCATGAATT
TGGATTGCATtgttttgtccaaaaaattatGGTCCGAAATGTACCCCTTC
GCAATTTCAATCTTATCAAGTCACCCAGCTTTAACAGATTGCATCGAGAT
TTGAGATTCgagattttgaaaaacactaTAAATGATCAATTCTCCGATTC
TTCTCATTTCAACCATGAACTGTTGGAAATACAAATCatctttaactttt
ttgattttatagttTTTGAGAATCGATCTTTGAATGTAGCACCCCAGAAA
AGTTACGTTGTCTCTCCAGCTATAAACACATCGTGGAATTCTTTTGAAGA
GACTGTTGCGAGAAGATTTATCCCTTATGACAAGGACTTGACAGATTCCG
TCACTTTGATCGTGGAGAACAAAGAAATCTACGTCAATTCGTACCTCTTA
ACAACAAATTCGCCCGTTTTTAAAGCAATGTTGAACTCTGTGTCTTTCAA
AGAGGGCCAAAGTAAAAGAGTTGAGCTTCCTGGAAAGAAACATTCTGAAA
TCTTATTCTTCCTGCATCATTTACAGACACCTCAAGATATTGGAAATATT
ATAGaTTTTCCTGATATTACCATTCTGGCACCCTTATGTCGTGAATACCA
AGTCGATTGGCTGACCAAGAAAATCAAGGATTTTATAAGAGTCAGAGCAG
CACGACTGAACAAAAAGGGAAGCAAAATTGTTGCTCTTAATTATCTTTCA
TTCTCTGAAGAAATAGGTTTCGATGAAAGTAATGATACGCTGTTGGTTAA
TTCCTTGTCTTGTGGTTTCCATAGCCTCCAAACATGCTTAGAGTTTTCAG
TGTTGAGTCGCCATAAACAAGTATTGATCGCTAGAAAAAGATTATGGCTT
TTATTACGACACTTTTTTGACAAGTATCGAGATCTGATCCTTAATGAAGA
AGGCTTTGGATTTCTTTCGCTTTTTGAGGAACAAAcggtttttgattttc
agtacAATAAAACTGAATGTGCTTACATTAAAGAGTTTCAAGAAAAACAT
GGCAAAGgcgagtgaaatatttttcgtcCATGAAATATCAGAATTCTTCT
TACAGCTTATTCACAATCCTGCAtcatatcttttcaaaattattactttt
ttcaaatCGAAAAGACGAGAGAATAGTATAAACTGTACTACTAGTTGGAA
AAACAAAATTGTCaggaaaatattgacactttaCAAAGCCCGTCACTCCA
CCTGATCTGTTATTTTTGTTACCACTGTGAAAATGTACTTTGCCTacacg
tctttttataagaacatcca
Run BLAST on NCBI

protein sequence of TCONS_00001385-protein

>TCONS_00001385-protein ID=TCONS_00001385-protein|Name=TCONS_00001385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
MANKRKQKTSAEMKSIASKIIKIDERKEKLVPFDFDDNDYDVIIITRENE
VYLPSGFVKMLSNGKDIQLRDGRMNIDASTECLVRCLSFYDLRFWDETQV
FENLRDVLSVTKMLKMKGLRDHIENEEFLPLIRAPSVSIHLTDSLLAHLG
IAHEFGLHCFVQKIMVRNVPLRNFNLIKSPSFNRLHRDLRFEILKNTIND
QFSDSSHFNHELLEIQIIFNFFDFIVFENRSLNVAPQKSYVVSPAINTSW
NSFEETVARRFIPYDKDLTDSVTLIVENKEIYVNSYLLTTNSPVFKAMLN
SVSFKEGQSKRVELPGKKHSEILFFLHHLQTPQDIGNIIDFPDITILAPL
CREYQVDWLTKKIKDFIRVRAARLNKKGSKIVALNYLSFSEEIGFDESND
TLLVNSLSCGFHSLQTCLEFSVLSRHKQVLIARKRLWLLLRHFFDKYRDL
ILNEEGFGFLSLFEEQTVFDFQYNKTECAYIKEFQEKHGKGE
Run BLAST on NCBI

transcript from alignment at sc0000010:792508..799122+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001385 ID=TCONS_00001385|Name=TCONS_00001385|organism=Clytia hemisphaerica|type=transcript|length=6615bp|location=Sequence derived from alignment at sc0000010:792508..799122+ (Clytia hemisphaerica)
caggtaaaaaaaaataaataaaaaaattgaaaacatgtCTGATTACAGCA GTTTCGGTTCATCCTCATTGGATTCGCTTTCTTCTTCATCGGGTTTTGAA TCATCACCAAGGTATGGATCAAGTGGTGGTCAACCCTCTTCCTCACAAAT GATGGAAGCAGTCAAACAACAAATAGCTGTTGCTAATGCTCAAGAACTTC TATCTGTAAGTATTGCACCCAgttaaatgttttattttcaaaaagagttG AGATATGATTTGGATATATGTTACTTTGCTCTTACGGATATTCTCTTGGC TTGAATCCAGGGGAGTCATTCCTAGAATTACCTCCCTTCTgtcctctttt ttctttcatttttgcaACTCTTTTCAGTGTGGTATTTATTACGAGTCTCC TCAAAAGCTGACCAGGTCACTAAGGCTTGATAGGTGTATTTTTTTACACG CTTTTTAATAAGAatgattttataagaacacgaggctgaaaattgactaa acctaagaacaaataaAGAACAATCTGAgactcagatttcagaaattact aaaaCAGTACTGAACTTAACAGATTTCAAACctattttaagtttttaggT AAAGAAGCTGAGCGTATTAAAAACATTaggagaacatttttaagccaaaa aaattaaaaacagccCAGTCTGATTAAAAATTAGCTGGTTCGTTTCACAA TGatcaaaattttctcacaatgttttcattttacaaactatcttcttatt atttattgttatcattttatttttagaaaatgtctGACAAGTGTTTCAAA AAGTGCATCACAAAACCTGGAGCCAACTTGGATAATTCAGAACAGGTAAA GTGAATTTAACATCATTTTCATTGATCACTGTAACgtgcactgggctcaa cttcagtatagGTGTGAAAGtggaaggcccaattgtaaacacttttttat aaacAGGGACACTTGAGAATAGAGAAGGCTCAATTGTTAATCCAGGATGA TGGGTACTCAGAATAAAGAGAGGGCCTTTGATTGTAAAGTTAGAATTATG AGTCATAGGGTACTCCGGATTAAGGAAAGCTCAATTATAAAGCCCACGTG ATAGGAGCTTGGGATAAAGGAAGGCTCGGTTGTGAATAAGCAtacaatgt tcttagtcaaattactcaatttttttaagagatagatgtttgttttgctc atgagggcttacttttgaagaatatgtatgcttagacatgaaattttggt tgcttggcgtgtttttatagaaaaactagccaaatttgatatttttttat aagcacattatcaattacttaggtattagcttttctcgagattggctctt tcattctttatgactttttttttgcacaaagatgcataactataaaccct cgaatgtgacggagctcgatttttggagaaaacaaaattttgggtaaatt ttagctaaaaaacggctaagaaaagggttttttggacttcgttaaatatt ggatcgttgtttttttcatgaaagtaggtaaaagatggctcaagcagatt gttgtaaaaaaaggattttcagctcaaaaaacgcatgtttatctataaga atcactattaataagcatacatcaatgttcttagcgccaaatttctcaat tttttgatgagatagatgtttattttgctcaggaagtcttgaatatgaaa gaatatttcaagagcatgaaattttggtttctaaacgtttttttagaaga aacaaacgactaattttaatacatcgtcactatttgtcttctgaatgatt gttctaacggtcatgctcacgtagatatcaattatatatgtgttaaatgc ataaccagctAGGTCCATAAAAGTTTCACTTGTTTAGTAAATTTcggcaa aatctttgaaaaaacgagtccctagggtccatttttcgaacctcagtggA GCACCCCGTCGGtaggcaagggtagtacccccccccccggagttACTCTA ATTGCTTCACTTTGCGATCAGTACTGTTTGCGATTGTTCTTTAAAGAAAT CTAATATCTAACCTAGTAACATATTCTTTGAACAAATAAGCAATATTTAC TTTGCTGGACGGGTAACGTCATGCTTTCCATCTTGTGACTGCAAATTTAT TCATCGTTTTAAatactttgatttttttcctttgTTGAAACTTTGTTgta acaaaataacaaatttcACTTTCAGTGTGTTTTGATAGATATTTATgaca acaaatatttttatagaaaatatatataaatcataaatcatttTTATAGA AATGTCTTGCGATGTGTATGGACCGCTACATGGAAGCATGGAACCTGGTA TCACAGACATACACCAATAGACTGAATAAAGAACACAGCATGCAAGGTGG TAGTGGTAGTGGTGTACCTAGTGCCCtcatgtaaacaaaaaaaattactg aACTCTTAAATAAAGACTGGAATAGCAGACATCTCATATGctgttaaaaa tgaaagttaatcTTTGTCTCAAGTAGTAGCCAAATACATGGCACAGAATG TACCTTGTCTCAGAATAATAGCCAAGAACTATTAAAATGCATTCTTTGCA CAAAACTATGAAGATAGATATTAATAATACATCCATTCTAATTCTAGTCC TTCTTTTCGAGCTAGGTAGCAATATGACTTTTTTTAGAAATAGAGATTAG AAtttattttcctatttttgaGCAATAACATGACTTGAAAATAAAGACCT AAACTAGACTACGGTTTGCTGAGATAAACtagacttttcttttttgtaca TTCCTTATATGAAAACTTGATTTTTAAGTACGCATCCCTTTTTGGATTAT GTTTGCCTTACCAAGAAATAATTACGTTTCcaaaaaaattccaattttca ttttctatagtTTGTTTGTATAATCTCCTAAGTCTTATAAGATTTCTTTA TCTTATCATAAGAAGGCTTTGTAAATTTTAGTAGttaaactttcataaaa aatactatataatttttgctaaaattaaGCCGCCAccagttttctttttt cattagGAATTATAAAATTAAGCGAATACCATATAGAATGATTCTTTTGT TGCTTTTTACACCTGATCTAAGATCGGAGGTCTCTACAATTGGTGGGGAA GTTtagaaaccacaatcgatttgtaagtgctctaaagtaggtttgaaggg tagagttttaacgctagacttaagactatctgaggatccaaaagttaaaa aatggtccagtagggcttgaaatatagcctagaaaccaataaatccctcc cagatcgaaataatcgatgaaatcaagttgaaggcccgaaattgagattc tcgctcgaacttcaattttcgaaaaatggtaaattagccaaaagtgccaa tatgttatggcactggtTGTAGTTACACTGGTagaattttaattcaaatt aattatttttaaactcTCACGCTCCGTGATTACAGTATCTTCACACGTCA ATCTTTAGTTTATTCATTTGAAATCTTCCCGAGGTTGCGAGAGTTTAGTT ACTTTGGAGTAAGCGTCTTGAAACCGAGAGTGTTAAGAAACTAAGAAGCT AGTTTTCAAGACTATATTTTCCAATTATAATATGCGACCaaattttttct ctgttttCAGTGTAAGAGAAGTAAAATGGCTAATAAAAGAAAACAGAAGA CATCAGCTGAGATGAAATCTATTGCAAGCAAAATTATTAAAATCGAcgag agaaaagaaaaattagtgCCATTTGATTTTGATGACAATGATTACGATGT GATAATTATAACAAGGGAAAATGAGGTTTATCTGCCATCTGGTTTTGTTA AGATGTTATCTAATGGTAAAGATATCCAATTAAGGGATGGTAGAATGAAT ATTGACGCTTCTACTGAATGTTTGGTTCGTTGCTTATCGTTTTATGACTT GCGATTTTGGGATGAGACGCAAGTATGTAAGTCTTACATTTTTCGAATAT GTTTGCAACATTTTTATGAATCGAATGTGTGCAGTCACACTCTGTCTGGA TGATGGATTAGCGCATCAAGTAGTCTTGATTTCCCAGATAATATAAAATG TTAATATTCATGAGAATGTACATTGAAGAGGAGGCTGAGCTCTTGCAACC CCCGGTACCCATCATTCCACCACTGCGCTCTCGTACGatcatggaaattg caaaaatttatttatcacGTTGAAATAGCCGAAAATATCCCAAATCAAGC ATCACGCCAAATAACACAAGAATGTCAATATGAACAATTATCAATGTCTT CAATAATTGATCCAATATCATTTACTCGATACATTTGAAACCCCACTGGC TATGACGTAATAGACGATATCAGAtaaacgtgaaaactcagatttgacct ccgagaattccccacaatgctttgtgcggaaaaatttcaccttgaacttt tttccgcgcaaagcattgtggacaattctcggaggtcaaatctgagNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttatttg gcacctaagagtaagccgatatcgtctattgtttatcattttgttttatt cttACAGTTACAGTTCTATTATACTTTCTTTTTTAGTTGAAAACCTGAGA GATGTTCTATCGGTcactaaaatgttaaaaatgaaGGGCCTGCGTGATCA TATTGAAAATGAAGAGTTTCTGCCACTCATCCGTGCACCATCGGTCTCAA TACATCTTACTGACTCTTTGCTTGCACATTTGGGAATCGCTCATGAATTT GGATTGCATtgttttgtccaaaaaattatGGTCCGAAATGTACCCCTTCG CAATTTCAATCTTATCAAGTCACCCAGCTTTAACAGATTGCATCGAGATT TGAGATTCgagattttgaaaaacactaTAAATGATCAATTCTCCGATTCT TCTCATTTCAACCATGAACTGTTGGAAATACAAATCatctttaacttttt tgattttatagttTTTGAGAATCGATCTTTGAATGTAGCACCCCAGAAAA GTTACGTTGTCTCTCCAGCTATAAACACATCGTGGAATTCTTTTGAAGAG ACTGTTGCGAGAAGATTTATCCCTTATGACAAGGACTTGACAGATTCCGT CACTTTGATCGTGGAGAACAAAGAAATCTACGTCAATTCGTACCTCTTAA CAACAAATTCGCCCGTTTTTAAAGCAATGTTGAACTCTGTGTCTTTCAAA GAGGGCCAAAGTAAAAGAGTTGAGCTTCCTGGAAAGAAACATTCTGAAAT CTTATTCTTCCTGCATCATTTACAGACACCTCAAGATATTGGAAATATTA TAGGTAAGAATATGCTATTACCTTCAgaatgactttttttaaatagcaCC TTGCTTTTTCATAGTATAAACCTTTATCCTGCCTATCTCTATAGTCCTTT GGTGCTAGAAACCTCATTTTGGGATAATATTGTGATTGGNACCTATCTCT ATAGCCCTTTGGTGCTAGAAACCTCATTTTGGGATAATATTGTGATTGGA GATTGTTGACCATTCTTAGCCCCCAGCCCCTTGTAGCCCCCCTCTTGTAA CCTAGTTTATGAAAACTGTCCCTAGACTAcctcatttttcatctttcaga TTTTCCTGATATTACCATTCTGGCACCCTTATGTCGTGAATACCAAGTCG ATTGGCTGACCAAGAAAATCAAGGATTTTATAAGAGTCAGAGCAGCACGA CTGAACAAAAAGGGAAGCAAAATTGTTGCTCTTAATTATCTTTCATTCTC TGAAGAAATAGGTTTCGATGAAAGTAATGATACGCTGTTGGTTAATTCCT TGTCTTGTGGTTTCCATAGCCTCCAAACATGCTTAGAGTTTTCAGTGTTG AGTCGCCATAAACAAGTATTGATCGCTAGAAAAAGATTATGGCTTTTATT ACGACACTTTTTTGACAAGTATCGAGATCTGATCCTTAATGAAGAAGGCT TTGGATTTCTTTCGCTTTTTGAGGAACAAAcggtttttgattttcagtac AATAAAACTGAATGTGCTTACATTAAAGAGTTTCAAGAAAAACATGGCAA AGgcgagtgaaatatttttcgtcCATGAAATATCAGAATTCTTCTTACAG CTTATTCACAATCCTGCAtcatatcttttcaaaattattacttttttcaa atCGAAAAGACGAGAGAATAGTATAAACTGTACTACTAGTTGGAAAAACA AAATTGTCaggaaaatattgacactttaCAAAGCCCGTCACTCCACCTGA TCTGTTATTTTTGTTACCACTGTGAAAATGTACTTTGCCTacacgtcttt ttataagaacatcca

Coding sequence (CDS) from alignment at sc0000010:792508..799122+

>TCONS_00001385 ID=TCONS_00001385|Name=TCONS_00001385|organism=Clytia hemisphaerica|type=CDS|length=4437bp|location=Sequence derived from alignment at sc0000010:792508..799122+ (Clytia hemisphaerica)
ATGGCTAATAAAAGAAAACAGAAGACATCAGCTGAGATGAAATCTATTGC
AAGCAAAATTATTAAAATCGAcgagagaaaagaaaaattagtgCCATTTG
ATTTTGATGACAATGATTACGATGTGATAATTATAACAAGGGAAAATGAG
GTTTATCTGCCATCTGGTTTTGTTAAGATGTTATCTAATGGTAAAGATAT
CCAATTAAGGGATGGTAGAATGAATATTGACGCTTCTACTGAATGTTTGG
TTCGTTGCTTATCGTTTTATGACTTGCGATTTTGGGATGAGACGCAAGTA
TTTGAAAACCTGAGAGATGTTCTATCGGTcactaaaatgttaaaaatgaa
GGGCCTGCGTGATCATATTGAAAATGAAGAGTTTCTGCCACTCATCCGTG
CACCATCGGTCTCAATACATCTTACTGACTCTTTGCTTGCACATTTGGGA
ATCGCTCATGAATTTGGATTGCATtgttttgtccaaaaaattatGGTCCG
AAATGTACCCCTTCGCAATTTCAATCTTATCAAGTCACCCAGCTTTAACA
GATTGCATCGAGATTTGAGATTCgagattttgaaaaacactaTAAATGAT
CAATTCTCCGATTCTTCTCATTTCAACCATGAACTGTTGGAAATACAAAT
CatctttaacttttttgattttatagttTTTGAGAATCGATCTTTGAATG
TAGCACCCCAGAAAAGTTACGTTGTCTCTCCAGCTATAAACACATCGTGG
AATTCTTTTGAAGAGACTGTTGCGAGAAGATTTATCCCTTATGACAAGGA
CTTGACAGATTCCGTCACTTTGATCGTGGAGAACAAAGAAATCTACGTCA
ATTCGTACCTCTTAACAACAAATTCGCCCGTTTTTAAAGCAATGTTGAAC
TCTGTGTCTTTCAAAGAGGGCCAAAGTAAAAGAGTTGAGCTTCCTGGAAA
GAAACATTCTGAAATCTTATTCTTCCTGCATCATTTACAGACACCTCAAG
ATATTGGAAATATTATAGaTTTTCCTGATATTACCATTCTGGCACCCTTA
TGTCGTGAATACCAAGTCGATTGGCTGACCAAGAAAATCAAGGATTTTAT
AAGAGTCAGAGCAGCACGACTGAACAAAAAGGGAAGCAAAATTGTTGCTC
TTAATTATCTTTCATTCTCTGAAGAAATAGGTTTCGATGAAAGTAATGAT
ACGCTGTTGGTTAATTCCTTGTCTTGTGGTTTCCATAGCCTCCAAACATG
CTTAGAGTTTTCAGTGTTGAGTCGCCATAAACAAGTATTGATCGCTAGAA
AAAGATTATGGCTTTTATTACGACACTTTTTTGACAAGTATCGAGATCTG
ATCCTTAATGAAGAAGGCTTTGGATTTCTTTCGCTTTTTGAGGAACAAAc
ggtttttgattttcagtacAATAAAACTGAATGTGCTTACATTAAAGAGT
TTCAAGAAAAACATGGCAAAGgcgagtgaATGGCTAATAAAAGAAAACAG
AAGACATCAGCTGAGATGAAATCTATTGCAAGCAAAATTATTAAAATCGA
cgagagaaaagaaaaattagtgCCATTTGATTTTGATGACAATGATTACG
ATGTGATAATTATAACAAGGGAAAATGAGGTTTATCTGCCATCTGGTTTT
GTTAAGATGTTATCTAATGGTAAAGATATCCAATTAAGGGATGGTAGAAT
GAATATTGACGCTTCTACTGAATGTTTGGTTCGTTGCTTATCGTTTTATG
ACTTGCGATTTTGGGATGAGACGCAAGTATTTGAAAACCTGAGAGATGTT
CTATCGGTcactaaaatgttaaaaatgaaGGGCCTGCGTGATCATATTGA
AAATGAAGAGTTTCTGCCACTCATCCGTGCACCATCGGTCTCAATACATC
TTACTGACTCTTTGCTTGCACATTTGGGAATCGCTCATGAATTTGGATTG
CATtgttttgtccaaaaaattatGGTCCGAAATGTACCCCTTCGCAATTT
CAATCTTATCAAGTCACCCAGCTTTAACAGATTGCATCGAGATTTGAGAT
TCgagattttgaaaaacactaTAAATGATCAATTCTCCGATTCTTCTCAT
TTCAACCATGAACTGTTGGAAATACAAATCatctttaacttttttgattt
tatagttTTTGAGAATCGATCTTTGAATGTAGCACCCCAGAAAAGTTACG
TTGTCTCTCCAGCTATAAACACATCGTGGAATTCTTTTGAAGAGACTGTT
GCGAGAAGATTTATCCCTTATGACAAGGACTTGACAGATTCCGTCACTTT
GATCGTGGAGAACAAAGAAATCTACGTCAATTCGTACCTCTTAACAACAA
ATTCGCCCGTTTTTAAAGCAATGTTGAACTCTGTGTCTTTCAAAGAGGGC
CAAAGTAAAAGAGTTGAGCTTCCTGGAAAGAAACATTCTGAAATCTTATT
CTTCCTGCATCATTTACAGACACCTCAAGATATTGGAAATATTATAGaTT
TTCCTGATATTACCATTCTGGCACCCTTATGTCGTGAATACCAAGTCGAT
TGGCTGACCAAGAAAATCAAGGATTTTATAAGAGTCAGAGCAGCACGACT
GAACAAAAAGGGAAGCAAAATTGTTGCTCTTAATTATCTTTCATTCTCTG
AAGAAATAGGTTTCGATGAAAGTAATGATACGCTGTTGGTTAATTCCTTG
TCTTGTGGTTTCCATAGCCTCCAAACATGCTTAGAGTTTTCAGTGTTGAG
TCGCCATAAACAAGTATTGATCGCTAGAAAAAGATTATGGCTTTTATTAC
GACACTTTTTTGACAAGTATCGAGATCTGATCCTTAATGAAGAAGGCTTT
GGATTTCTTTCGCTTTTTGAGGAACAAAcggtttttgattttcagtacAA
TAAAACTGAATGTGCTTACATTAAAGAGTTTCAAGAAAAACATGGCAAAG
gcgagtgaATGGCTAATAAAAGAAAACAGAAGACATCAGCTGAGATGAAA
TCTATTGCAAGCAAAATTATTAAAATCGAcgagagaaaagaaaaattagt
gCCATTTGATTTTGATGACAATGATTACGATGTGATAATTATAACAAGGG
AAAATGAGGTTTATCTGCCATCTGGTTTTGTTAAGATGTTATCTAATGGT
AAAGATATCCAATTAAGGGATGGTAGAATGAATATTGACGCTTCTACTGA
ATGTTTGGTTCGTTGCTTATCGTTTTATGACTTGCGATTTTGGGATGAGA
CGCAAGTATTTGAAAACCTGAGAGATGTTCTATCGGTcactaaaatgtta
aaaatgaaGGGCCTGCGTGATCATATTGAAAATGAAGAGTTTCTGCCACT
CATCCGTGCACCATCGGTCTCAATACATCTTACTGACTCTTTGCTTGCAC
ATTTGGGAATCGCTCATGAATTTGGATTGCATtgttttgtccaaaaaatt
atGGTCCGAAATGTACCCCTTCGCAATTTCAATCTTATCAAGTCACCCAG
CTTTAACAGATTGCATCGAGATTTGAGATTCgagattttgaaaaacacta
TAAATGATCAATTCTCCGATTCTTCTCATTTCAACCATGAACTGTTGGAA
ATACAAATCatctttaacttttttgattttatagttTTTGAGAATCGATC
TTTGAATGTAGCACCCCAGAAAAGTTACGTTGTCTCTCCAGCTATAAACA
CATCGTGGAATTCTTTTGAAGAGACTGTTGCGAGAAGATTTATCCCTTAT
GACAAGGACTTGACAGATTCCGTCACTTTGATCGTGGAGAACAAAGAAAT
CTACGTCAATTCGTACCTCTTAACAACAAATTCGCCCGTTTTTAAAGCAA
TGTTGAACTCTGTGTCTTTCAAAGAGGGCCAAAGTAAAAGAGTTGAGCTT
CCTGGAAAGAAACATTCTGAAATCTTATTCTTCCTGCATCATTTACAGAC
ACCTCAAGATATTGGAAATATTATAGaTTTTCCTGATATTACCATTCTGG
CACCCTTATGTCGTGAATACCAAGTCGATTGGCTGACCAAGAAAATCAAG
GATTTTATAAGAGTCAGAGCAGCACGACTGAACAAAAAGGGAAGCAAAAT
TGTTGCTCTTAATTATCTTTCATTCTCTGAAGAAATAGGTTTCGATGAAA
GTAATGATACGCTGTTGGTTAATTCCTTGTCTTGTGGTTTCCATAGCCTC
CAAACATGCTTAGAGTTTTCAGTGTTGAGTCGCCATAAACAAGTATTGAT
CGCTAGAAAAAGATTATGGCTTTTATTACGACACTTTTTTGACAAGTATC
GAGATCTGATCCTTAATGAAGAAGGCTTTGGATTTCTTTCGCTTTTTGAG
GAACAAAcggtttttgattttcagtacAATAAAACTGAATGTGCTTACAT
TAAAGAGTTTCAAGAAAAACATGGCAAAGgcgagtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000736XLOC_000736Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001385-proteinTCONS_00001385-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001385-exon-sc0000010-1491911889:792508..792712TCONS_00001385-exon-sc0000010-1491911889:792508..792712Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1510915933:792508..792712TCONS_00001385-exon-sc0000010-1510915933:792508..792712Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1575043694:792508..792712TCONS_00001385-exon-sc0000010-1575043694:792508..792712Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1491911889:793284..793352TCONS_00001385-exon-sc0000010-1491911889:793284..793352Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1510915933:793284..793352TCONS_00001385-exon-sc0000010-1510915933:793284..793352Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1575043694:793284..793352TCONS_00001385-exon-sc0000010-1575043694:793284..793352Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1491911889:794807..794903TCONS_00001385-exon-sc0000010-1491911889:794807..794903Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1510915933:794807..794903TCONS_00001385-exon-sc0000010-1510915933:794807..794903Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1575043694:794807..794903TCONS_00001385-exon-sc0000010-1575043694:794807..794903Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1491911889:796168..796483TCONS_00001385-exon-sc0000010-1491911889:796168..796483Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1510915933:796168..796483TCONS_00001385-exon-sc0000010-1510915933:796168..796483Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1575043694:796168..796483TCONS_00001385-exon-sc0000010-1575043694:796168..796483Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1491911889:797394..798110TCONS_00001385-exon-sc0000010-1491911889:797394..798110Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1510915933:797394..798110TCONS_00001385-exon-sc0000010-1510915933:797394..798110Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1575043694:797394..798110TCONS_00001385-exon-sc0000010-1575043694:797394..798110Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1491911889:798407..799122TCONS_00001385-exon-sc0000010-1491911889:798407..799122Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1510915933:798407..799122TCONS_00001385-exon-sc0000010-1510915933:798407..799122Clytia hemisphaericaexon
TCONS_00001385-exon-sc0000010-1575043694:798407..799122TCONS_00001385-exon-sc0000010-1575043694:798407..799122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:792508..799122 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.1588 5.18043 3.29248 2.58596 1.58492 0.654635 1.46721 1.22062 1.07781 0.864246 1.73532 0.996549 1.69598 1.49404 2.16485 2.70938 1.86643 1.52206 2.33128 1.42379 1.27702 1.21473 4.07657 1.54623 1.72461 1.84402 0.392539 0.376312 4.94631 2.39
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
BLAST of TCONS_00001385 vs. Swiss-Prot (Human)
Match: TIM13 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Homo sapiens GN=TIMM13 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.556e-30
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  149 MMEAVKQQIAVANAQELLSKMSDKCFKKCITKPGANLDNSEQKCLAMCMDRYMEAWNLVSQTYTNRLNKEHS 364
            +ME VK QIAVANAQELL +M+DKCF+KCI KPG +LDNSEQKC+AMCMDRYM+AWN VS+ Y +RL +E +
Sbjct:   22 IMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCIAMCMDRYMDAWNTVSRAYNSRLQRERA 93          
The following BLAST results are available for this feature:
BLAST of TCONS_00001385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIM133.556e-3070.83Mitochondrial import inner membrane translocase su... [more]
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