XLOC_000604 (gene) - C. hemisphaerica

Overview
NameXLOC_000604
Unique NameXLOC_000604
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000007:1261539..1268402+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000604 ID=XLOC_000604|Name=XLOC_000604|organism=Clytia hemisphaerica|type=gene|length=6864bp|location=Sequence derived from alignment at sc0000007:1261539..1268402+ (Clytia hemisphaerica)
cacccccgcttattccaaaggctattaggtacccgagagtagtatttccc
tttttgttattttatcaagagaattaaaaagtaataggaTATttagataa
tattatattgaaGACGAGTAGAACAATTTTTATCCTTATATTTCGTGCAC
GATCTTCAAGTCATGTTAATTTATTACATATTGCGTGCTTCGGAAGGATA
TCGTGATGGTGGTGTACCACACACAATGTGTATATGCGTTTGCATATTTT
AGTAGAGAGTGTCTCTCTTACCTTTTAAACTTATGTAAAAGAATTTTTCT
GATATAGAGTATTTCTATTTtatagtttctttattttttaatccCTTTCT
TTCGTAACCGTTATCTTGAGTGAGAGGTCAATGATAGCTTCAAAAGTTAT
ACAAGTGCTTTAAACCAAAGCTTTTTCTTCGATTAAAATTGTCGAATCAG
CAAAATGCCATTATTTCACAACTGGTTTTCCAAATGTTCCTTTTTCGGTA
GCGTAGGAGTAATGAAAAAGTTCAATGTGTTTGACTAAATCTTTTTGTGT
GCTAGGTAGAATTTCGTAATGTTTGTATGCGATAAACGAGCTTTATTGCT
AGGAaaccaaaaataataatttcttgTCGTGTAGATAACAGAGGCGAGAA
TTACTGAAGGCTTTCGTCGCACTGTGAACTAAGTGAGAGAAAAATTCNTC
GAAAAGAATCGGTCAGCGCGACCGAATGATACCGAAAAGTCGAGTtccaa
aaaaaacgaaaataaaagtGGAATTTTGGAACTGTCTCCCGTATCACGAG
GCGCGAGAGTTCTTCTGAATTGACGACGTTGTGTTAGTTTAATTGGAAAT
TGGTTATGAcgttttttgaatgtttgatAGACACTGTGGACATCGGGATA
ATGAATGATTTACCAATATGTTGAAAGTAGTATACATAGATAGGAAGTGA
TTTCTTACGAGATTTCAGaaagttttcaaattcatcCAGCACTCATGCTG
CTTTTCGTTTTGATTGCGAAACAGTGCGAATCTTATGACTGGTAAACGAT
TGATTTAGCTCTATATTTTTGACGTAActatttgtaaaaaatcttatata
cccccacatttttgtttatttttattgctTATATCGATACTCCTATTGCA
TATTGACTTGCTTGGATCCTAATAATCTTCAAAGCACTACAAGTAATGCT
AGTTCAGCTTAAACTGGGAAACCTGGGAAAACGTGAAAATATCTTAGTTC
GAGGGTGCTAGCAAGTTTAGTGAAAATAGGTCTTTTAAACACCAACtcct
ctcgggtacctaataagcgtccTCCCGCCAAAtaatttctcgaaaatttt
ccacccaggacattcttattccaaccccccgcttattaattttcggtaaa
atgtttttgaaagttcccttttttgtcctaacTCTGCTGTATTAGcatcc
ttttcaaaaattttctacccGGGGCATTTTCATTAcacccccgcttattc
caaaggctattaggtacccgagagtagtatttccctttttgttattttat
caagagaattaaaaagtaataggaTATttagataatattatattgaaGAC
GAGTAGAACAATTTTTATCCTTATATTTCGTGCACGATCTTCAAGTCATG
TTAATTTATTACATATTGCGTGCTTCGGAAGGATATCGTGATGGTGGTGT
ACCACACACAATGTGTATATGCGTTTGCATATTTTAGTAGAGAGTGTCTC
TCTTACCTTTTAAACTTATGTAAAAGAATTTTTCTGATATAGAGTATTTC
TATTTtatagtttctttattttttaatccCTTTCTTTCGTAACCGTTATC
TTGAGTGAGAGGTCAATGATAgccttcaaaagttatacaaGTGCTTTAAA
CCAAAGCTTTTTCTTCGATTAAAATTGTCGAATCAGCAAAATGCCATTAT
TTCACAACTGGTTTTCCAAATGTTCCTTTTTCGGTAGCGTAGGAGTAATG
AAAAAGTTCAATGTGTTTGACTAAATCTTTTTGTGTGCTAGGTAGAATTT
CGTAATGTTTGTATGCGATAAACGAGCTTTATTGCTAGGAaaccaaaaat
aataatttcttgTCGTGTAGATAACAGAGGCGAGAATTACTGAAGGCTTT
CGTCACACTGTGAACTAAGTGAGAGaaaaattccttttgaaatTAGTTTA
ACCATCATCCGATGAGAATTTCTTGgatttttcagttaaaatgcAACCTC
AAATTATAACATGATGATATGCAATTAAACTGTCTGTTATAGAATGTGAA
CTCCAGTTTAGTTTTATCGATGCATTAGCAATTCACTTAAAATGACTAAA
CTAACAAGTGTGGGTATTTGGAATTCTATGGAATTTCAAGGATAATAATA
ATTACCCATCTCTTAAAATTTAGAGGGGAGTAATTATAGActgaattcca
aaaaaaaaagacatatttACTATCGACCGAATTTTCTCAtgctttttttt
tcgaaaaaaggaGGAGAGAGGTTTAATTCTCTAGAGACGTGATAACATGC
TTGGCATGCTTAAAAATTAGAGATTGGCACGATTGATCTCTCGCATTCCA
AACCAATGTCCACTTTAAGAGGAAGCACTTGTGTAAACGAAGTGATGTCA
TTCTATCGCTTTCGTTATCAGAATAAacagaaaacaatgaaaaattggat
aaaCAATGATATCATAGACCATACAATGCTTAGACTGACCAGAATTTTCT
CACGCTATGCTATCCTCTCAATCTTGGGACTCATTCATTCACATCAAACT
TCAAGGAATTTTTCCAACTTTTTCAGTGTCCACAATATGAAAAGGATAAA
TGTGAAAAAGTAAAACTTAAGCAAGTATCTACTGACTTTCCCTACCTTTG
CCGAAATTCCCAAAAACGACCCTACCCTACTAGTATTGATTTTCTATTGG
TGTTTTCCTAGTCGGaacacagacctctacaaagtTGCAGGTAGTATAGG
AGTACGTATTCGTCAATGGATGCCAGCAGCCCAGTATTTTTTTTCGACCC
TACATGGAATATTCCGTACTCCctggattttgaatttttccaccGATACT
GTTAACTGCAGATAAAAAGTTGTCTCCCCTTGTTCAGGTTTCTGTACTAC
TTCATGTCTATGCCTAATCCTTTGATTTGTTTTCACCGGGTTGAATGCTT
TTTAAACAGGTGGTATGTATGGATAAGCATACTTGTTTTAGCTTTATTAT
TCCATAAGTCTCGTGTTGGTGACTTGTAAAGGAGTAACTTTATTACATCT
TGCTACTTTTAGATTGATTCTATTTCATATATTTGCTAGGATtgttaaga
attttctttttcgttaaCAGTTGTTCAAATACGAGGTTGATTTCACTTGA
AGCCGTTCTGAGACAGGTGCCAATAATTTTCTTCTGAACCATTGATATGT
TAAGTCAACCTTGAGTTTGCCGTCTAGCAGCAAACTAGAAACGAAATTGA
ACGGTTGGAAATGTATGTAAATGAAACACTTTCGTACCCAATCCTTTGGT
TACACATTCTTCATGAAGGtgtgaaaaataaagatttaaagTTGAAATTA
AAGAATATTTCCTGTTCATTTGAAATGCAAGTGCCATCACATCAGCTGCT
CTCAAATGTTTTTTCTCGATAACTTTGGATAAATATCATCGCTATATATT
CTTTACTTTTCTAAAATTGATGCATCAAACCTTTATCAGTGGAGCAGACT
GCTACATACATTTTGTAGTTAGGGGGGGGTAGGATCTTTGCGACTTGTGT
ATCTAAAATATCTACATAGTGTTTAATACTGCTGACAGAGGGTGGGTTAC
AATACACTTTGTGATGACTTTTCCCATTTCCATTTTAGCATCAAAGGATA
AGCGATGATGCTGCGTTTGATTTGCTTGACCTGGTGTCTGGTGTTGACAT
CAGGTAAGCCAGCAACAAAATATCACCAGGAGGACCTCTTGGATATGGTG
AAACGTGCGTTAGAAGGTGGTCTACACCAATCTCTTGATGTTGCAAAACA
GTTGGTCTCCTCTGACTTGGATGCCTTGGAAGGTGATATCAAGAAAAATG
GATTCAAGTCAGGAAATGTCATGAAAGGTTGGTTTTAATTCTTTATTATA
TATATGGTTGGTAAGTCTGGCAATATGAGTCTAGAGTATAGAGAATTACG
GCATTGTTGACACCTGCATGTCCGGGGGGGGgcgcactcgattttgaaaa
cgaccgtacgttcggccaaaaatcaggtctctaaaatcggacccttacag
tgcaggaaaaattttacacccttacagtgcactttttcccacatgctcac
aaatcaacccttacaatgcactttccaaagtccaaaaaacctacccttaa
gggccgcacgtccggtaggtcacttacctccCTCCCCCCGGGCTGCATGT
GAAATAACATTCCTCAAAAGTTTATTTGATATTTACATTCAACGCGACAT
TTATTACGCTTATCTTTTCAGCCCCCAACGCTGTACAAATCAAGAAGAAC
TTACACAGCGACATCAAAGTCGGAAAATacgaacaaaaaattttcaaatc
agtcAAAGCTGCCGTATGCTCTAAAGGTACTGACGGTAAATTCACTTTCT
TCTAGATTATTTCATCTGAGATAAAATTCTGAACACAATACAACCGATCT
TCTTTAATAATTTAACGCTCAACTATTGTATTAGCTCTTTATCTCATCTA
CCTTCAATACCAGGACTGACAGAAGCTTAACTTTGATCTTAGCAAGGATC
TAGCTCTGGCATCTCTTTTTGAACGACTAACGAACGGAGAGGGACGGTTG
ATGGAACTATCGTTAAACATATTCAAAAGTGTCAAGCAAATGGTTTGTTC
TAGTAGATGAAGAATTACTTTCATTGCTCAGTTGAGTTTTTATACAGCTG
TTTTTTGTTTAGGTGAAGGTCATCTTGAAGAGGCAGTTGATTCCTTCATG
GACTTCTTGGCTAACATTCGAAACAACATCTTGACCAAAGCCGCTGGCAA
ATATTTGGATTCCGTTGAGGATTTCGTCGGAACAACTAGTATTGGTATGT
GTTGTAATCTGTAATTTTCCAAGTCgatattttttctggaaatggaAAGC
TACGATATAGTAGACTCTCGCTTATCCGAGCTTTTATGTCTTCTATAAAC
TAGAGTCTaattctgactgaactttgctttttgatgattttgatggcgct
gagtctagtgaagtagactagaggacatcgccattttggattttttcact
ttcgttctatacgaaaacaacaaaacaataaaatatatgctaaaatccat
caaagtttatgaaactataaaaaacatgaaaatacccccaaaatttgaaa
agaattggTCTATTGGAcatggttttctgtttgtttttctccaaaaaggg
actggatctagtggcatgtatttgctaccacctcaagcaaagccaaaata
tgAAGGCTGCCAAATTAcgccgggccacttatcagcaccatccagtctat
caaaaagctataagtggccCCCGGGCTATGTCttctatagaccttttcat
aaatacGTCACGAACATGAtcgcttgcctcgtattcaaacaattaccatg
gtgatatGTCCTTTGagaaatgaaatgatttttttatgaatagaaagtag
ttttattaaaatccgctgggagataatcaccatggcaatattttcaaaac
gaggcaagtgatgttcgtaacgtaatttattaaaaggtctattattcgaa
tctttctataattcgaactaattcccagtccccgtcaaggaggagTCCCT
CTTGAGCCTACTTTCTATGATTCGAATGTCTCTGTTATTCGAAAAAATAA
CATTCCCCGCTCGAGGTTTGAGTAAACGAAAGTCAACAACTGTACTTTCA
ATTCGTGTTGGCTTAAAACTGATAAAATACTGATAAAATATATGTTGTTT
AAGAGAAAGGGATAATTGTTTATTAGCTGCAAATATCGCTAATATGAAAT
TGCGTTACTCgagccaaaatgaaaaaaaatacgtTACTCACCGTTATTGA
ATTTCTCTGAATACCCATCCtctgtttttcagattttgatgATGAAGAAC
GAAAGATCGTGAAAGAGATGGATTTGGATGGAGATGTGACAATCGAAAAT
TTCCATGACGAAATCAAAAATGCTGTCTCTATCTGCAAAAAAGATTATGT
AGGATGCAAGGACGATGGTAAGAAATCatcttttacacccctgtctcaat
aacCTGGTTAATAGCCACtgaaataaaatgaagaagCTATTTTCCTTGTT
TCATACTCAtataaccctgtctcaaaaatcatcaaaagtttgatgaaaaa
aattcaacgtGAAAAGATGTTGGTAGTATTTGTTTCCCTCTTGAAATCTT
TGGTTAAGATTGCCTCTGATTGTTGAAGGTTATAATACTGTGTTCTGTTG
TAATGTTGTAAATAGAAGTTACATACCCGATCAAGAAAATAACACTTTAA
CAATAACTCTTTCTTTCTTTAGATTCAGACGTTGGAGAATACGTCGATGT
TAAAGATCAAGTCGATGACATTATTGATACCCTTCAAAAGAAattggaaa
atgttcgaaaggCTGCCAgctaaatattttcttctttgtaTAGTTATTgt
gttaaaaaacattttttttataaaaatctgtAAATATATTTAATTCAAAG
GCTTCTAAAAAACCATCGCTTATTCTTTCGTTTGATTTTAACCAGAGCTT
GCCAGGCTAAGACACATTATAGTCGCTTCTAAACATGCTCTAAATCATTA
ATTTTGGTGAgaac
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00001066TCONS_00001066Clytia hemisphaericatranscript
TCONS_00001067TCONS_00001067Clytia hemisphaericatranscript
TCONS_00001068TCONS_00001068Clytia hemisphaericatranscript
TCONS_00001069TCONS_00001069Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00001069-proteinTCONS_00001069-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1261539..1268402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.07	17.14	9.22	7.72	5.25	3.06	3.51	3.73	3.11	5.26	2.58	3.19	297.05	254.65	1.87	2.11	106.52	134.43	1469.89	1637.26	646.4	640.63	161.84	230.25	304.17	285.03	7.95	9.58	6.36	5.47