Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001068 ID=TCONS_00001068|Name=TCONS_00001068|organism=Clytia hemisphaerica|type=transcript|length=2707bp
CTAGGAaaccaaaaataataatttcttgTCGTGTAGATAACAGAGGCGAG
AATTACTGAAGGCTTTCGTCACACTGTGAACTAAGTGAGAGaaaaattcc
ttttgaaatTAGTTTAACCATCATCCGATGAGAATTTCTTGgatttttca
gttaaaatgcAACCTCAAATTATAACATGATGATATGCAATTAAACTGTC
TGTTATAGAATGTGAACTCCAGTTTAGTTTTATCGATGCATTAGCAATTC
ACTTAAAATGACTAAACTAACAAGTGTGGGTATTTGGAATTCTATGGAAT
TTCAAGGATAATAATAATTACCCATCTCTTAAAATTTAGAGGGGAGTAAT
TATAGActgaattccaaaaaaaaaagacatatttACTATCGACCGAATTT
TCTCAtgctttttttttcgaaaaaaggaGGAGAGAGGTTTAATTCTCTAG
AGACGTGATAACATGCTTGGCATGCTTAAAAATTAGAGATTGGCACGATT
GATCTCTCGCATTCCAAACCAATGTCCACTTTAAGAGGAAGCACTTGTGT
AAACGAAGTGATGTCATTCTATCGCTTTCGTTATCAGAATAAacagaaaa
caatgaaaaattggataaaCAATGATATCATAGACCATACAATGCTTAGA
CTGACCAGAATTTTCTCACGCTATGCTATCCTCTCAATCTTGGGACTCAT
TCATTCACATCAAACTTCAAGGAATTTTTCCAACTTTTTCAGTGTCCACA
ATATGAAAAGGATAAATGTGAAAAAGTAAAACTTAAGCAAGTATCTACTG
ACTTTCCCTACCTTTGCCGAAATTCCCAAAAACGACCCTACCCTACTAGT
ATTGATTTTCTATTGGTGTTTTCCTAGTCGGaacacagacctctacaaag
tTGCAGGTAGTATAGGAGTACGTATTCGTCAATGGATGCCAGCAGCCCAG
TATTTTTTTTCGACCCTACATGGAATATTCCGTACTCCctggattttgaa
tttttccaccGATACTGTTAACTGCAGATAAAAAGTTGTCTCCCCTTGTT
CAGGTTTCTGTACTACTTCATGTCTATGCCTAATCCTTTGATTTGTTTTC
ACCGGGTTGAATGCTTTTTAAACAGGTGGTATGTATGGATAAGCATACTT
GTTTTAGCTTTATTATTCCATAAGTCTCGTGTTGGTGACTTGTAAAGGAG
TAACTTTATTACATCTTGCTACTTTTAGATTGATTCTATTTCATATATTT
GCTAGGATtgttaagaattttctttttcgttaaCAGTTGTTCAAATACGA
GGTTGATTTCACTTGAAGCCGTTCTGAGACAGGTGCCAATAATTTTCTTC
TGAACCATTGATATGTTAAGTCAACCTTGAGTTTGCCGTCTAGCAGCAAA
CTAGAAACGAAATTGAACGGTTGGAAATGTATGTAAATGAAACACTTTCG
TACCCAATCCTTTGGTTACACATTCTTCATGAAGGtgtgaaaaataaaga
tttaaagTTGAAATTAAAGAATATTTCCTGTTCATTTGAAATGCAAGTGC
CATCACATCAGCTGCTCTCAAATGTTTTTTCTCGATAACTTTGGATAAAT
ATCATCGCTATATATTCTTTACTTTTCTAAAATTGATGCATCAAACCTTT
ATCAGTGGAGCAGACTGCTACATACATTTTGTAGTTAGGGGGGGGTAGGA
TCTTTGCGACTTGTGTATCTAAAATATCTACATAGTGTTTAATACTGCTG
ACAGAGGGTGGGTTACAATACACTTTGTGATGACTTTTCCCATTTCCATT
TTAGCATCAAAGGATAAGCGATGATGCTGCGTTTGATTTGCTTGACCTGG
TGTCTGGTGTTGACATCAGGTAAGCCAGCAACAAAATATCACCAGGAGGA
CCTCTTGGATATGGTGAAACGTGCGTTAGAAGGTGGTCTACACCAATCTC
TTGATGTTGCAAAACAGTTGGTCTCCTCTGACTTGGATGCCTTGGAAGGT
GATATCAAGAAAAATGGATTCAAGTCAGGAAATGTCATGAAAGCCCCCAA
CGCTGTACAAATCAAGAAGAACTTACACAGCGACATCAAAGTCGGAAAAT
acgaacaaaaaattttcaaatcagtcAAAGCTGCCGTATGCTCTAAAGGT
GAAGGTCATCTTGAAGAGGCAGTTGATTCCTTCATGGACTTCTTGGCTAA
CATTCGAAACAACATCTTGACCAAAGCCGCTGGCAAATATTTGGATTCCG
TTGAGGATTTCGTCGGAACAACTAGTATTGattttgatgATGAAGAACGA
AAGATCGTGAAAGAGATGGATTTGGATGGAGATGTGACAATCGAAAATTT
CCATGACGAAATCAAAAATGCTGTCTCTATCTGCAAAAAAGATTATGTAG
GATGCAAGGACGATGATTCAGACGTTGGAGAATACGTCGATGTTAAAGAT
CAAGTCGATGACATTATTGATACCCTTCAAAAGAAattggaaaatgttcg
aaaggCTGCCAgctaaatattttcttctttgtaTAGTTATTgtgttaaaa
aacattttttttataaaaatctgtAAATATATTTAATTCAAAGGCTTCTA
AAAAACCATCGCTTATTCTTTCGTTTGATTTTAACCAGAGCTTGCCAGGC
TAAGACACATTATAGTCGCTTCTAAACATGCTCTAAATCATTAATTTTGG
TGAgaac Run BLAST on NCBI transcript from alignment at sc0000007:1263623..1268402+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001068 ID=TCONS_00001068|Name=TCONS_00001068|organism=Clytia hemisphaerica|type=transcript|length=4780bp|location=Sequence derived from alignment at sc0000007:1263623..1268402+ (Clytia hemisphaerica)
CTAGGAaaccaaaaataataatttcttgTCGTGTAGATAACAGAGGCGAG
AATTACTGAAGGCTTTCGTCACACTGTGAACTAAGTGAGAGaaaaattcc
ttttgaaatTAGTTTAACCATCATCCGATGAGAATTTCTTGgatttttca
gttaaaatgcAACCTCAAATTATAACATGATGATATGCAATTAAACTGTC
TGTTATAGAATGTGAACTCCAGTTTAGTTTTATCGATGCATTAGCAATTC
ACTTAAAATGACTAAACTAACAAGTGTGGGTATTTGGAATTCTATGGAAT
TTCAAGGATAATAATAATTACCCATCTCTTAAAATTTAGAGGGGAGTAAT
TATAGActgaattccaaaaaaaaaagacatatttACTATCGACCGAATTT
TCTCAtgctttttttttcgaaaaaaggaGGAGAGAGGTTTAATTCTCTAG
AGACGTGATAACATGCTTGGCATGCTTAAAAATTAGAGATTGGCACGATT
GATCTCTCGCATTCCAAACCAATGTCCACTTTAAGAGGAAGCACTTGTGT
AAACGAAGTGATGTCATTCTATCGCTTTCGTTATCAGAATAAacagaaaa
caatgaaaaattggataaaCAATGATATCATAGACCATACAATGCTTAGA
CTGACCAGAATTTTCTCACGCTATGCTATCCTCTCAATCTTGGGACTCAT
TCATTCACATCAAACTTCAAGGAATTTTTCCAACTTTTTCAGTGTCCACA
ATATGAAAAGGATAAATGTGAAAAAGTAAAACTTAAGCAAGTATCTACTG
ACTTTCCCTACCTTTGCCGAAATTCCCAAAAACGACCCTACCCTACTAGT
ATTGATTTTCTATTGGTGTTTTCCTAGTCGGaacacagacctctacaaag
tTGCAGGTAGTATAGGAGTACGTATTCGTCAATGGATGCCAGCAGCCCAG
TATTTTTTTTCGACCCTACATGGAATATTCCGTACTCCctggattttgaa
tttttccaccGATACTGTTAACTGCAGATAAAAAGTTGTCTCCCCTTGTT
CAGGTTTCTGTACTACTTCATGTCTATGCCTAATCCTTTGATTTGTTTTC
ACCGGGTTGAATGCTTTTTAAACAGGTGGTATGTATGGATAAGCATACTT
GTTTTAGCTTTATTATTCCATAAGTCTCGTGTTGGTGACTTGTAAAGGAG
TAACTTTATTACATCTTGCTACTTTTAGATTGATTCTATTTCATATATTT
GCTAGGATtgttaagaattttctttttcgttaaCAGTTGTTCAAATACGA
GGTTGATTTCACTTGAAGCCGTTCTGAGACAGGTGCCAATAATTTTCTTC
TGAACCATTGATATGTTAAGTCAACCTTGAGTTTGCCGTCTAGCAGCAAA
CTAGAAACGAAATTGAACGGTTGGAAATGTATGTAAATGAAACACTTTCG
TACCCAATCCTTTGGTTACACATTCTTCATGAAGGtgtgaaaaataaaga
tttaaagTTGAAATTAAAGAATATTTCCTGTTCATTTGAAATGCAAGTGC
CATCACATCAGCTGCTCTCAAATGTTTTTTCTCGATAACTTTGGATAAAT
ATCATCGCTATATATTCTTTACTTTTCTAAAATTGATGCATCAAACCTTT
ATCAGTGGAGCAGACTGCTACATACATTTTGTAGTTAGGGGGGGGTAGGA
TCTTTGCGACTTGTGTATCTAAAATATCTACATAGTGTTTAATACTGCTG
ACAGAGGGTGGGTTACAATACACTTTGTGATGACTTTTCCCATTTCCATT
TTAGCATCAAAGGATAAGCGATGATGCTGCGTTTGATTTGCTTGACCTGG
TGTCTGGTGTTGACATCAGGTAAGCCAGCAACAAAATATCACCAGGAGGA
CCTCTTGGATATGGTGAAACGTGCGTTAGAAGGTGGTCTACACCAATCTC
TTGATGTTGCAAAACAGTTGGTCTCCTCTGACTTGGATGCCTTGGAAGGT
GATATCAAGAAAAATGGATTCAAGTCAGGAAATGTCATGAAAGGTTGGTT
TTAATTCTTTATTATATATATGGTTGGTAAGTCTGGCAATATGAGTCTAG
AGTATAGAGAATTACGGCATTGTTGACACCTGCATGTCCGGGGGGGGgcg
cactcgattttgaaaacgaccgtacgttcggccaaaaatcaggtctctaa
aatcggacccttacagtgcaggaaaaattttacacccttacagtgcactt
tttcccacatgctcacaaatcaacccttacaatgcactttccaaagtcca
aaaaacctacccttaagggccgcacgtccggtaggtcacttacctccCTC
CCCCCGGGCTGCATGTGAAATAACATTCCTCAAAAGTTTATTTGATATTT
ACATTCAACGCGACATTTATTACGCTTATCTTTTCAGCCCCCAACGCTGT
ACAAATCAAGAAGAACTTACACAGCGACATCAAAGTCGGAAAATacgaac
aaaaaattttcaaatcagtcAAAGCTGCCGTATGCTCTAAAGGTACTGAC
GGTAAATTCACTTTCTTCTAGATTATTTCATCTGAGATAAAATTCTGAAC
ACAATACAACCGATCTTCTTTAATAATTTAACGCTCAACTATTGTATTAG
CTCTTTATCTCATCTACCTTCAATACCAGGACTGACAGAAGCTTAACTTT
GATCTTAGCAAGGATCTAGCTCTGGCATCTCTTTTTGAACGACTAACGAA
CGGAGAGGGACGGTTGATGGAACTATCGTTAAACATATTCAAAAGTGTCA
AGCAAATGGTTTGTTCTAGTAGATGAAGAATTACTTTCATTGCTCAGTTG
AGTTTTTATACAGCTGTTTTTTGTTTAGGTGAAGGTCATCTTGAAGAGGC
AGTTGATTCCTTCATGGACTTCTTGGCTAACATTCGAAACAACATCTTGA
CCAAAGCCGCTGGCAAATATTTGGATTCCGTTGAGGATTTCGTCGGAACA
ACTAGTATTGGTATGTGTTGTAATCTGTAATTTTCCAAGTCgatattttt
tctggaaatggaAAGCTACGATATAGTAGACTCTCGCTTATCCGAGCTTT
TATGTCTTCTATAAACTAGAGTCTaattctgactgaactttgctttttga
tgattttgatggcgctgagtctagtgaagtagactagaggacatcgccat
tttggattttttcactttcgttctatacgaaaacaacaaaacaataaaat
atatgctaaaatccatcaaagtttatgaaactataaaaaacatgaaaata
cccccaaaatttgaaaagaattggTCTATTGGAcatggttttctgtttgt
ttttctccaaaaagggactggatctagtggcatgtatttgctaccacctc
aagcaaagccaaaatatgAAGGCTGCCAAATTAcgccgggccacttatca
gcaccatccagtctatcaaaaagctataagtggccCCCGGGCTATGTCtt
ctatagaccttttcataaatacGTCACGAACATGAtcgcttgcctcgtat
tcaaacaattaccatggtgatatGTCCTTTGagaaatgaaatgatttttt
tatgaatagaaagtagttttattaaaatccgctgggagataatcaccatg
gcaatattttcaaaacgaggcaagtgatgttcgtaacgtaatttattaaa
aggtctattattcgaatctttctataattcgaactaattcccagtccccg
tcaaggaggagTCCCTCTTGAGCCTACTTTCTATGATTCGAATGTCTCTG
TTATTCGAAAAAATAACATTCCCCGCTCGAGGTTTGAGTAAACGAAAGTC
AACAACTGTACTTTCAATTCGTGTTGGCTTAAAACTGATAAAATACTGAT
AAAATATATGTTGTTTAAGAGAAAGGGATAATTGTTTATTAGCTGCAAAT
ATCGCTAATATGAAATTGCGTTACTCgagccaaaatgaaaaaaaatacgt
TACTCACCGTTATTGAATTTCTCTGAATACCCATCCtctgtttttcagat
tttgatgATGAAGAACGAAAGATCGTGAAAGAGATGGATTTGGATGGAGA
TGTGACAATCGAAAATTTCCATGACGAAATCAAAAATGCTGTCTCTATCT
GCAAAAAAGATTATGTAGGATGCAAGGACGATGGTAAGAAATCatctttt
acacccctgtctcaataacCTGGTTAATAGCCACtgaaataaaatgaaga
agCTATTTTCCTTGTTTCATACTCAtataaccctgtctcaaaaatcatca
aaagtttgatgaaaaaaattcaacgtGAAAAGATGTTGGTAGTATTTGTT
TCCCTCTTGAAATCTTTGGTTAAGATTGCCTCTGATTGTTGAAGGTTATA
ATACTGTGTTCTGTTGTAATGTTGTAAATAGAAGTTACATACCCGATCAA
GAAAATAACACTTTAACAATAACTCTTTCTTTCTTTAGATTCAGACGTTG
GAGAATACGTCGATGTTAAAGATCAAGTCGATGACATTATTGATACCCTT
CAAAAGAAattggaaaatgttcgaaaggCTGCCAgctaaatattttcttc
tttgtaTAGTTATTgtgttaaaaaacattttttttataaaaatctgtAAA
TATATTTAATTCAAAGGCTTCTAAAAAACCATCGCTTATTCTTTCGTTTG
ATTTTAACCAGAGCTTGCCAGGCTAAGACACATTATAGTCGCTTCTAAAC
ATGCTCTAAATCATTAATTTTGGTGAgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001068-exon-sc0000007-1491911889:1263623..1265665 | TCONS_00001068-exon-sc0000007-1491911889:1263623..1265665 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1510915933:1263623..1265665 | TCONS_00001068-exon-sc0000007-1510915933:1263623..1265665 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1575043694:1263623..1265665 | TCONS_00001068-exon-sc0000007-1575043694:1263623..1265665 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1491911889:1266060..1266164 | TCONS_00001068-exon-sc0000007-1491911889:1266060..1266164 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1510915933:1266060..1266164 | TCONS_00001068-exon-sc0000007-1510915933:1266060..1266164 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1575043694:1266060..1266164 | TCONS_00001068-exon-sc0000007-1575043694:1266060..1266164 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1491911889:1266501..1266632 | TCONS_00001068-exon-sc0000007-1491911889:1266501..1266632 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1510915933:1266501..1266632 | TCONS_00001068-exon-sc0000007-1510915933:1266501..1266632 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1575043694:1266501..1266632 | TCONS_00001068-exon-sc0000007-1575043694:1266501..1266632 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1491911889:1267671..1267805 | TCONS_00001068-exon-sc0000007-1491911889:1267671..1267805 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1510915933:1267671..1267805 | TCONS_00001068-exon-sc0000007-1510915933:1267671..1267805 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1575043694:1267671..1267805 | TCONS_00001068-exon-sc0000007-1575043694:1267671..1267805 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1491911889:1268111..1268402 | TCONS_00001068-exon-sc0000007-1491911889:1268111..1268402 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1510915933:1268111..1268402 | TCONS_00001068-exon-sc0000007-1510915933:1268111..1268402 | Clytia hemisphaerica | exon |
| TCONS_00001068-exon-sc0000007-1575043694:1268111..1268402 | TCONS_00001068-exon-sc0000007-1575043694:1268111..1268402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:1263623..1268402 + |
Blast
The following BLAST results are available for this feature:
|
