XLOC_000604 (gene) - C. hemisphaerica

Overview
NameXLOC_000604
Unique NameXLOC_000604
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000007:1261539..1268402+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000604 ID=XLOC_000604|Name=XLOC_000604|organism=Clytia hemisphaerica|type=gene|length=6864bp|location=Sequence derived from alignment at sc0000007:1261539..1268402+ (Clytia hemisphaerica)
cacccccgcttattccaaaggctattaggtacccgagagtagtatttccc tttttgttattttatcaagagaattaaaaagtaataggaTATttagataa tattatattgaaGACGAGTAGAACAATTTTTATCCTTATATTTCGTGCAC GATCTTCAAGTCATGTTAATTTATTACATATTGCGTGCTTCGGAAGGATA TCGTGATGGTGGTGTACCACACACAATGTGTATATGCGTTTGCATATTTT AGTAGAGAGTGTCTCTCTTACCTTTTAAACTTATGTAAAAGAATTTTTCT GATATAGAGTATTTCTATTTtatagtttctttattttttaatccCTTTCT TTCGTAACCGTTATCTTGAGTGAGAGGTCAATGATAGCTTCAAAAGTTAT ACAAGTGCTTTAAACCAAAGCTTTTTCTTCGATTAAAATTGTCGAATCAG CAAAATGCCATTATTTCACAACTGGTTTTCCAAATGTTCCTTTTTCGGTA GCGTAGGAGTAATGAAAAAGTTCAATGTGTTTGACTAAATCTTTTTGTGT GCTAGGTAGAATTTCGTAATGTTTGTATGCGATAAACGAGCTTTATTGCT AGGAaaccaaaaataataatttcttgTCGTGTAGATAACAGAGGCGAGAA TTACTGAAGGCTTTCGTCGCACTGTGAACTAAGTGAGAGAAAAATTCNTC GAAAAGAATCGGTCAGCGCGACCGAATGATACCGAAAAGTCGAGTtccaa aaaaaacgaaaataaaagtGGAATTTTGGAACTGTCTCCCGTATCACGAG GCGCGAGAGTTCTTCTGAATTGACGACGTTGTGTTAGTTTAATTGGAAAT TGGTTATGAcgttttttgaatgtttgatAGACACTGTGGACATCGGGATA ATGAATGATTTACCAATATGTTGAAAGTAGTATACATAGATAGGAAGTGA TTTCTTACGAGATTTCAGaaagttttcaaattcatcCAGCACTCATGCTG CTTTTCGTTTTGATTGCGAAACAGTGCGAATCTTATGACTGGTAAACGAT TGATTTAGCTCTATATTTTTGACGTAActatttgtaaaaaatcttatata cccccacatttttgtttatttttattgctTATATCGATACTCCTATTGCA TATTGACTTGCTTGGATCCTAATAATCTTCAAAGCACTACAAGTAATGCT AGTTCAGCTTAAACTGGGAAACCTGGGAAAACGTGAAAATATCTTAGTTC GAGGGTGCTAGCAAGTTTAGTGAAAATAGGTCTTTTAAACACCAACtcct ctcgggtacctaataagcgtccTCCCGCCAAAtaatttctcgaaaatttt ccacccaggacattcttattccaaccccccgcttattaattttcggtaaa atgtttttgaaagttcccttttttgtcctaacTCTGCTGTATTAGcatcc ttttcaaaaattttctacccGGGGCATTTTCATTAcacccccgcttattc caaaggctattaggtacccgagagtagtatttccctttttgttattttat caagagaattaaaaagtaataggaTATttagataatattatattgaaGAC GAGTAGAACAATTTTTATCCTTATATTTCGTGCACGATCTTCAAGTCATG TTAATTTATTACATATTGCGTGCTTCGGAAGGATATCGTGATGGTGGTGT ACCACACACAATGTGTATATGCGTTTGCATATTTTAGTAGAGAGTGTCTC TCTTACCTTTTAAACTTATGTAAAAGAATTTTTCTGATATAGAGTATTTC TATTTtatagtttctttattttttaatccCTTTCTTTCGTAACCGTTATC TTGAGTGAGAGGTCAATGATAgccttcaaaagttatacaaGTGCTTTAAA CCAAAGCTTTTTCTTCGATTAAAATTGTCGAATCAGCAAAATGCCATTAT TTCACAACTGGTTTTCCAAATGTTCCTTTTTCGGTAGCGTAGGAGTAATG AAAAAGTTCAATGTGTTTGACTAAATCTTTTTGTGTGCTAGGTAGAATTT CGTAATGTTTGTATGCGATAAACGAGCTTTATTGCTAGGAaaccaaaaat aataatttcttgTCGTGTAGATAACAGAGGCGAGAATTACTGAAGGCTTT CGTCACACTGTGAACTAAGTGAGAGaaaaattccttttgaaatTAGTTTA ACCATCATCCGATGAGAATTTCTTGgatttttcagttaaaatgcAACCTC AAATTATAACATGATGATATGCAATTAAACTGTCTGTTATAGAATGTGAA CTCCAGTTTAGTTTTATCGATGCATTAGCAATTCACTTAAAATGACTAAA CTAACAAGTGTGGGTATTTGGAATTCTATGGAATTTCAAGGATAATAATA ATTACCCATCTCTTAAAATTTAGAGGGGAGTAATTATAGActgaattcca aaaaaaaaagacatatttACTATCGACCGAATTTTCTCAtgctttttttt tcgaaaaaaggaGGAGAGAGGTTTAATTCTCTAGAGACGTGATAACATGC TTGGCATGCTTAAAAATTAGAGATTGGCACGATTGATCTCTCGCATTCCA AACCAATGTCCACTTTAAGAGGAAGCACTTGTGTAAACGAAGTGATGTCA TTCTATCGCTTTCGTTATCAGAATAAacagaaaacaatgaaaaattggat aaaCAATGATATCATAGACCATACAATGCTTAGACTGACCAGAATTTTCT CACGCTATGCTATCCTCTCAATCTTGGGACTCATTCATTCACATCAAACT TCAAGGAATTTTTCCAACTTTTTCAGTGTCCACAATATGAAAAGGATAAA TGTGAAAAAGTAAAACTTAAGCAAGTATCTACTGACTTTCCCTACCTTTG CCGAAATTCCCAAAAACGACCCTACCCTACTAGTATTGATTTTCTATTGG TGTTTTCCTAGTCGGaacacagacctctacaaagtTGCAGGTAGTATAGG AGTACGTATTCGTCAATGGATGCCAGCAGCCCAGTATTTTTTTTCGACCC TACATGGAATATTCCGTACTCCctggattttgaatttttccaccGATACT GTTAACTGCAGATAAAAAGTTGTCTCCCCTTGTTCAGGTTTCTGTACTAC TTCATGTCTATGCCTAATCCTTTGATTTGTTTTCACCGGGTTGAATGCTT TTTAAACAGGTGGTATGTATGGATAAGCATACTTGTTTTAGCTTTATTAT TCCATAAGTCTCGTGTTGGTGACTTGTAAAGGAGTAACTTTATTACATCT TGCTACTTTTAGATTGATTCTATTTCATATATTTGCTAGGATtgttaaga attttctttttcgttaaCAGTTGTTCAAATACGAGGTTGATTTCACTTGA AGCCGTTCTGAGACAGGTGCCAATAATTTTCTTCTGAACCATTGATATGT TAAGTCAACCTTGAGTTTGCCGTCTAGCAGCAAACTAGAAACGAAATTGA ACGGTTGGAAATGTATGTAAATGAAACACTTTCGTACCCAATCCTTTGGT TACACATTCTTCATGAAGGtgtgaaaaataaagatttaaagTTGAAATTA AAGAATATTTCCTGTTCATTTGAAATGCAAGTGCCATCACATCAGCTGCT CTCAAATGTTTTTTCTCGATAACTTTGGATAAATATCATCGCTATATATT CTTTACTTTTCTAAAATTGATGCATCAAACCTTTATCAGTGGAGCAGACT GCTACATACATTTTGTAGTTAGGGGGGGGTAGGATCTTTGCGACTTGTGT ATCTAAAATATCTACATAGTGTTTAATACTGCTGACAGAGGGTGGGTTAC AATACACTTTGTGATGACTTTTCCCATTTCCATTTTAGCATCAAAGGATA AGCGATGATGCTGCGTTTGATTTGCTTGACCTGGTGTCTGGTGTTGACAT CAGGTAAGCCAGCAACAAAATATCACCAGGAGGACCTCTTGGATATGGTG AAACGTGCGTTAGAAGGTGGTCTACACCAATCTCTTGATGTTGCAAAACA GTTGGTCTCCTCTGACTTGGATGCCTTGGAAGGTGATATCAAGAAAAATG GATTCAAGTCAGGAAATGTCATGAAAGGTTGGTTTTAATTCTTTATTATA TATATGGTTGGTAAGTCTGGCAATATGAGTCTAGAGTATAGAGAATTACG GCATTGTTGACACCTGCATGTCCGGGGGGGGgcgcactcgattttgaaaa cgaccgtacgttcggccaaaaatcaggtctctaaaatcggacccttacag tgcaggaaaaattttacacccttacagtgcactttttcccacatgctcac aaatcaacccttacaatgcactttccaaagtccaaaaaacctacccttaa gggccgcacgtccggtaggtcacttacctccCTCCCCCCGGGCTGCATGT GAAATAACATTCCTCAAAAGTTTATTTGATATTTACATTCAACGCGACAT TTATTACGCTTATCTTTTCAGCCCCCAACGCTGTACAAATCAAGAAGAAC TTACACAGCGACATCAAAGTCGGAAAATacgaacaaaaaattttcaaatc agtcAAAGCTGCCGTATGCTCTAAAGGTACTGACGGTAAATTCACTTTCT TCTAGATTATTTCATCTGAGATAAAATTCTGAACACAATACAACCGATCT TCTTTAATAATTTAACGCTCAACTATTGTATTAGCTCTTTATCTCATCTA CCTTCAATACCAGGACTGACAGAAGCTTAACTTTGATCTTAGCAAGGATC TAGCTCTGGCATCTCTTTTTGAACGACTAACGAACGGAGAGGGACGGTTG ATGGAACTATCGTTAAACATATTCAAAAGTGTCAAGCAAATGGTTTGTTC TAGTAGATGAAGAATTACTTTCATTGCTCAGTTGAGTTTTTATACAGCTG TTTTTTGTTTAGGTGAAGGTCATCTTGAAGAGGCAGTTGATTCCTTCATG GACTTCTTGGCTAACATTCGAAACAACATCTTGACCAAAGCCGCTGGCAA ATATTTGGATTCCGTTGAGGATTTCGTCGGAACAACTAGTATTGGTATGT GTTGTAATCTGTAATTTTCCAAGTCgatattttttctggaaatggaAAGC TACGATATAGTAGACTCTCGCTTATCCGAGCTTTTATGTCTTCTATAAAC TAGAGTCTaattctgactgaactttgctttttgatgattttgatggcgct gagtctagtgaagtagactagaggacatcgccattttggattttttcact ttcgttctatacgaaaacaacaaaacaataaaatatatgctaaaatccat caaagtttatgaaactataaaaaacatgaaaatacccccaaaatttgaaa agaattggTCTATTGGAcatggttttctgtttgtttttctccaaaaaggg actggatctagtggcatgtatttgctaccacctcaagcaaagccaaaata tgAAGGCTGCCAAATTAcgccgggccacttatcagcaccatccagtctat caaaaagctataagtggccCCCGGGCTATGTCttctatagaccttttcat aaatacGTCACGAACATGAtcgcttgcctcgtattcaaacaattaccatg gtgatatGTCCTTTGagaaatgaaatgatttttttatgaatagaaagtag ttttattaaaatccgctgggagataatcaccatggcaatattttcaaaac gaggcaagtgatgttcgtaacgtaatttattaaaaggtctattattcgaa tctttctataattcgaactaattcccagtccccgtcaaggaggagTCCCT CTTGAGCCTACTTTCTATGATTCGAATGTCTCTGTTATTCGAAAAAATAA CATTCCCCGCTCGAGGTTTGAGTAAACGAAAGTCAACAACTGTACTTTCA ATTCGTGTTGGCTTAAAACTGATAAAATACTGATAAAATATATGTTGTTT AAGAGAAAGGGATAATTGTTTATTAGCTGCAAATATCGCTAATATGAAAT TGCGTTACTCgagccaaaatgaaaaaaaatacgtTACTCACCGTTATTGA ATTTCTCTGAATACCCATCCtctgtttttcagattttgatgATGAAGAAC GAAAGATCGTGAAAGAGATGGATTTGGATGGAGATGTGACAATCGAAAAT TTCCATGACGAAATCAAAAATGCTGTCTCTATCTGCAAAAAAGATTATGT AGGATGCAAGGACGATGGTAAGAAATCatcttttacacccctgtctcaat aacCTGGTTAATAGCCACtgaaataaaatgaagaagCTATTTTCCTTGTT TCATACTCAtataaccctgtctcaaaaatcatcaaaagtttgatgaaaaa aattcaacgtGAAAAGATGTTGGTAGTATTTGTTTCCCTCTTGAAATCTT TGGTTAAGATTGCCTCTGATTGTTGAAGGTTATAATACTGTGTTCTGTTG TAATGTTGTAAATAGAAGTTACATACCCGATCAAGAAAATAACACTTTAA CAATAACTCTTTCTTTCTTTAGATTCAGACGTTGGAGAATACGTCGATGT TAAAGATCAAGTCGATGACATTATTGATACCCTTCAAAAGAAattggaaa atgttcgaaaggCTGCCAgctaaatattttcttctttgtaTAGTTATTgt gttaaaaaacattttttttataaaaatctgtAAATATATTTAATTCAAAG GCTTCTAAAAAACCATCGCTTATTCTTTCGTTTGATTTTAACCAGAGCTT GCCAGGCTAAGACACATTATAGTCGCTTCTAAACATGCTCTAAATCATTA ATTTTGGTGAgaac
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00001066TCONS_00001066Clytia hemisphaericatranscript
TCONS_00001067TCONS_00001067Clytia hemisphaericatranscript
TCONS_00001068TCONS_00001068Clytia hemisphaericatranscript
TCONS_00001069TCONS_00001069Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00001069-proteinTCONS_00001069-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1261539..1268402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.07 17.14 9.22 7.72 5.25 3.06 3.51 3.73 3.11 5.26 2.58 3.19 297.05 254.65 1.87 2.11 106.52 134.43 1469.89 1637.26 646.4 640.63 161.84 230.25 304.17 285.03 7.95 9.58 6.36 5.47