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TCONS_00001067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001067
Unique NameTCONS_00001067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001067 ID=TCONS_00001067|Name=TCONS_00001067|organism=Clytia hemisphaerica|type=transcript|length=2331bp
CTAGGAaaccaaaaataataatttcttgTCGTGTAGATAACAGAGGCGAG
AATTACTGAAGGCTTTCGTCACACTGTGAACTAAGTGAGAGaaaaattcc
ttttgaaatTAGTTTAACCATCATCCGATGAGAATTTCTTGgatttttca
gttaaaatgcAACCTCAAATTATAACATGATGATATGCAATTAAACTGTC
TGTTATAGAATGTGAACTCCAGTTTAGTTTTATCGATGCATTAGCAATTC
ACTTAAAATGACTAAACTAACAAGTGTGGGTATTTGGAATTCTATGGAAT
TTCAAGGATAATAATAATTACCCATCTCTTAAAATTTAGAGGGGAGTAAT
TATAGActgaattccaaaaaaaaaagacatatttACTATCGACCGAATTT
TCTCAtgctttttttttcgaaaaaaggaGGAGAGAGGTTTAATTCTCTAG
AGACGTGATAACATGCTTGGCATGCTTAAAAATTAGAGATTGGCACGATT
GATCTCTCGCATTCCAAACCAATGTCCACTTTAAGAGGAAGCACTTGTGT
AAACGAAGTGATGTCATTCTATCGCTTTCGTTATCAGAATAAacagaaaa
caatgaaaaattggataaaCAATGATATCATAGACCATACAATGCTTAGA
CTGACCAGAATTTTCTCACGCTATGCTATCCTCTCAATCTTGGGACTCAT
TCATTCACATCAAACTTCAAGGAATTTTTCCAACTTTTTCAGTGTCCACA
ATATGAAAAGGATAAATGTGAAAAAGTAAAACTTAAGCAAGTATCTACTG
ACTTTCCCTACCTTTGCCGAAATTCCCAAAAACGACCCTACCCTACTAGT
ATTGATTTTCTATTGGTGTTTTCCTAGTCGGaacacagacctctacaaag
tTGCAGGTAGTATAGGAGTACGTATTCGTCAATGGATGCCAGCAGCCCAG
TATTTTTTTTCGACCCTACATGGAATATTCCGTACTCCctggattttgaa
tttttccaccGATACTGTTAACTGCAGATAAAAAGTTGTCTCCCCTTGTT
CAGGTTTCTGTACTACTTCATGTCTATGCCTAATCCTTTGATTTGTTTTC
ACCGGGTTGAATGCTTTTTAAACAGGTGGTATGTATGGATAAGCATACTT
GTTTTAGCTTTATTATTCCATAAGTCTCGTGTTGGTGACTTGTAAAGGAG
TAACTTTATTACATCTTGCTACTTTTAGATTGATTCTATTTCATATATTT
GCTAGGATtgttaagaattttctttttcgttaaCAGTTGTTCAAATACGA
GGTTGATTTCACTTGAAGCCGTTCTGAGACAGGTGCCAATAATTTTCTTC
TGAACCATTGATATGTTAAGTCAACCTTGAGTTTGCCGTCTAGCAGCAAA
CTAGAAACGAAATTGAACGGTTGGAAATCATCAAAGGATAAGCGATGATG
CTGCGTTTGATTTGCTTGACCTGGTGTCTGGTGTTGACATCAGGTAAGCC
AGCAACAAAATATCACCAGGAGGACCTCTTGGATATGGTGAAACGTGCGT
TAGAAGGTGGTCTACACCAATCTCTTGATGTTGCAAAACAGTTGGTCTCC
TCTGACTTGGATGCCTTGGAAGGTGATATCAAGAAAAATGGATTCAAGTC
AGGAAATGTCATGAAAGCCCCCAACGCTGTACAAATCAAGAAGAACTTAC
ACAGCGACATCAAAGTCGGAAAATacgaacaaaaaattttcaaatcagtc
AAAGCTGCCGTATGCTCTAAAGGTGAAGGTCATCTTGAAGAGGCAGTTGA
TTCCTTCATGGACTTCTTGGCTAACATTCGAAACAACATCTTGACCAAAG
CCGCTGGCAAATATTTGGATTCCGTTGAGGATTTCGTCGGAACAACTAGT
ATTGattttgatgATGAAGAACGAAAGATCGTGAAAGAGATGGATTTGGA
TGGAGATGTGACAATCGAAAATTTCCATGACGAAATCAAAAATGCTGTCT
CTATCTGCAAAAAAGATTATGTAGGATGCAAGGACGATGATTCAGACGTT
GGAGAATACGTCGATGTTAAAGATCAAGTCGATGACATTATTGATACCCT
TCAAAAGAAattggaaaatgttcgaaaggCTGCCAgctaaatattttctt
ctttgtaTAGTTATTgtgttaaaaaacattttttttataaaaatctgtAA
ATATATTTAATTCAAAGGCTTCTAAAAAACCATCGCTTATTCTTTCGTTT
GATTTTAACCAGAGCTTGCCAGGCTAAGACACATTATAGTCGCTTCTAAA
CATGCTCTAAATCATTAATTTTGGTGAgaac
Run BLAST on NCBI

transcript from alignment at sc0000007:1263623..1268402+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001067 ID=TCONS_00001067|Name=TCONS_00001067|organism=Clytia hemisphaerica|type=transcript|length=4780bp|location=Sequence derived from alignment at sc0000007:1263623..1268402+ (Clytia hemisphaerica)
CTAGGAaaccaaaaataataatttcttgTCGTGTAGATAACAGAGGCGAG AATTACTGAAGGCTTTCGTCACACTGTGAACTAAGTGAGAGaaaaattcc ttttgaaatTAGTTTAACCATCATCCGATGAGAATTTCTTGgatttttca gttaaaatgcAACCTCAAATTATAACATGATGATATGCAATTAAACTGTC TGTTATAGAATGTGAACTCCAGTTTAGTTTTATCGATGCATTAGCAATTC ACTTAAAATGACTAAACTAACAAGTGTGGGTATTTGGAATTCTATGGAAT TTCAAGGATAATAATAATTACCCATCTCTTAAAATTTAGAGGGGAGTAAT TATAGActgaattccaaaaaaaaaagacatatttACTATCGACCGAATTT TCTCAtgctttttttttcgaaaaaaggaGGAGAGAGGTTTAATTCTCTAG AGACGTGATAACATGCTTGGCATGCTTAAAAATTAGAGATTGGCACGATT GATCTCTCGCATTCCAAACCAATGTCCACTTTAAGAGGAAGCACTTGTGT AAACGAAGTGATGTCATTCTATCGCTTTCGTTATCAGAATAAacagaaaa caatgaaaaattggataaaCAATGATATCATAGACCATACAATGCTTAGA CTGACCAGAATTTTCTCACGCTATGCTATCCTCTCAATCTTGGGACTCAT TCATTCACATCAAACTTCAAGGAATTTTTCCAACTTTTTCAGTGTCCACA ATATGAAAAGGATAAATGTGAAAAAGTAAAACTTAAGCAAGTATCTACTG ACTTTCCCTACCTTTGCCGAAATTCCCAAAAACGACCCTACCCTACTAGT ATTGATTTTCTATTGGTGTTTTCCTAGTCGGaacacagacctctacaaag tTGCAGGTAGTATAGGAGTACGTATTCGTCAATGGATGCCAGCAGCCCAG TATTTTTTTTCGACCCTACATGGAATATTCCGTACTCCctggattttgaa tttttccaccGATACTGTTAACTGCAGATAAAAAGTTGTCTCCCCTTGTT CAGGTTTCTGTACTACTTCATGTCTATGCCTAATCCTTTGATTTGTTTTC ACCGGGTTGAATGCTTTTTAAACAGGTGGTATGTATGGATAAGCATACTT GTTTTAGCTTTATTATTCCATAAGTCTCGTGTTGGTGACTTGTAAAGGAG TAACTTTATTACATCTTGCTACTTTTAGATTGATTCTATTTCATATATTT GCTAGGATtgttaagaattttctttttcgttaaCAGTTGTTCAAATACGA GGTTGATTTCACTTGAAGCCGTTCTGAGACAGGTGCCAATAATTTTCTTC TGAACCATTGATATGTTAAGTCAACCTTGAGTTTGCCGTCTAGCAGCAAA CTAGAAACGAAATTGAACGGTTGGAAATGTATGTAAATGAAACACTTTCG TACCCAATCCTTTGGTTACACATTCTTCATGAAGGtgtgaaaaataaaga tttaaagTTGAAATTAAAGAATATTTCCTGTTCATTTGAAATGCAAGTGC CATCACATCAGCTGCTCTCAAATGTTTTTTCTCGATAACTTTGGATAAAT ATCATCGCTATATATTCTTTACTTTTCTAAAATTGATGCATCAAACCTTT ATCAGTGGAGCAGACTGCTACATACATTTTGTAGTTAGGGGGGGGTAGGA TCTTTGCGACTTGTGTATCTAAAATATCTACATAGTGTTTAATACTGCTG ACAGAGGGTGGGTTACAATACACTTTGTGATGACTTTTCCCATTTCCATT TTAGCATCAAAGGATAAGCGATGATGCTGCGTTTGATTTGCTTGACCTGG TGTCTGGTGTTGACATCAGGTAAGCCAGCAACAAAATATCACCAGGAGGA CCTCTTGGATATGGTGAAACGTGCGTTAGAAGGTGGTCTACACCAATCTC TTGATGTTGCAAAACAGTTGGTCTCCTCTGACTTGGATGCCTTGGAAGGT GATATCAAGAAAAATGGATTCAAGTCAGGAAATGTCATGAAAGGTTGGTT TTAATTCTTTATTATATATATGGTTGGTAAGTCTGGCAATATGAGTCTAG AGTATAGAGAATTACGGCATTGTTGACACCTGCATGTCCGGGGGGGGgcg cactcgattttgaaaacgaccgtacgttcggccaaaaatcaggtctctaa aatcggacccttacagtgcaggaaaaattttacacccttacagtgcactt tttcccacatgctcacaaatcaacccttacaatgcactttccaaagtcca aaaaacctacccttaagggccgcacgtccggtaggtcacttacctccCTC CCCCCGGGCTGCATGTGAAATAACATTCCTCAAAAGTTTATTTGATATTT ACATTCAACGCGACATTTATTACGCTTATCTTTTCAGCCCCCAACGCTGT ACAAATCAAGAAGAACTTACACAGCGACATCAAAGTCGGAAAATacgaac aaaaaattttcaaatcagtcAAAGCTGCCGTATGCTCTAAAGGTACTGAC GGTAAATTCACTTTCTTCTAGATTATTTCATCTGAGATAAAATTCTGAAC ACAATACAACCGATCTTCTTTAATAATTTAACGCTCAACTATTGTATTAG CTCTTTATCTCATCTACCTTCAATACCAGGACTGACAGAAGCTTAACTTT GATCTTAGCAAGGATCTAGCTCTGGCATCTCTTTTTGAACGACTAACGAA CGGAGAGGGACGGTTGATGGAACTATCGTTAAACATATTCAAAAGTGTCA AGCAAATGGTTTGTTCTAGTAGATGAAGAATTACTTTCATTGCTCAGTTG AGTTTTTATACAGCTGTTTTTTGTTTAGGTGAAGGTCATCTTGAAGAGGC AGTTGATTCCTTCATGGACTTCTTGGCTAACATTCGAAACAACATCTTGA CCAAAGCCGCTGGCAAATATTTGGATTCCGTTGAGGATTTCGTCGGAACA ACTAGTATTGGTATGTGTTGTAATCTGTAATTTTCCAAGTCgatattttt tctggaaatggaAAGCTACGATATAGTAGACTCTCGCTTATCCGAGCTTT TATGTCTTCTATAAACTAGAGTCTaattctgactgaactttgctttttga tgattttgatggcgctgagtctagtgaagtagactagaggacatcgccat tttggattttttcactttcgttctatacgaaaacaacaaaacaataaaat atatgctaaaatccatcaaagtttatgaaactataaaaaacatgaaaata cccccaaaatttgaaaagaattggTCTATTGGAcatggttttctgtttgt ttttctccaaaaagggactggatctagtggcatgtatttgctaccacctc aagcaaagccaaaatatgAAGGCTGCCAAATTAcgccgggccacttatca gcaccatccagtctatcaaaaagctataagtggccCCCGGGCTATGTCtt ctatagaccttttcataaatacGTCACGAACATGAtcgcttgcctcgtat tcaaacaattaccatggtgatatGTCCTTTGagaaatgaaatgatttttt tatgaatagaaagtagttttattaaaatccgctgggagataatcaccatg gcaatattttcaaaacgaggcaagtgatgttcgtaacgtaatttattaaa aggtctattattcgaatctttctataattcgaactaattcccagtccccg tcaaggaggagTCCCTCTTGAGCCTACTTTCTATGATTCGAATGTCTCTG TTATTCGAAAAAATAACATTCCCCGCTCGAGGTTTGAGTAAACGAAAGTC AACAACTGTACTTTCAATTCGTGTTGGCTTAAAACTGATAAAATACTGAT AAAATATATGTTGTTTAAGAGAAAGGGATAATTGTTTATTAGCTGCAAAT ATCGCTAATATGAAATTGCGTTACTCgagccaaaatgaaaaaaaatacgt TACTCACCGTTATTGAATTTCTCTGAATACCCATCCtctgtttttcagat tttgatgATGAAGAACGAAAGATCGTGAAAGAGATGGATTTGGATGGAGA TGTGACAATCGAAAATTTCCATGACGAAATCAAAAATGCTGTCTCTATCT GCAAAAAAGATTATGTAGGATGCAAGGACGATGGTAAGAAATCatctttt acacccctgtctcaataacCTGGTTAATAGCCACtgaaataaaatgaaga agCTATTTTCCTTGTTTCATACTCAtataaccctgtctcaaaaatcatca aaagtttgatgaaaaaaattcaacgtGAAAAGATGTTGGTAGTATTTGTT TCCCTCTTGAAATCTTTGGTTAAGATTGCCTCTGATTGTTGAAGGTTATA ATACTGTGTTCTGTTGTAATGTTGTAAATAGAAGTTACATACCCGATCAA GAAAATAACACTTTAACAATAACTCTTTCTTTCTTTAGATTCAGACGTTG GAGAATACGTCGATGTTAAAGATCAAGTCGATGACATTATTGATACCCTT CAAAAGAAattggaaaatgttcgaaaggCTGCCAgctaaatattttcttc tttgtaTAGTTATTgtgttaaaaaacattttttttataaaaatctgtAAA TATATTTAATTCAAAGGCTTCTAAAAAACCATCGCTTATTCTTTCGTTTG ATTTTAACCAGAGCTTGCCAGGCTAAGACACATTATAGTCGCTTCTAAAC ATGCTCTAAATCATTAATTTTGGTGAgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000604XLOC_000604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001067-exon-sc0000007-1491911889:1263623..1265050TCONS_00001067-exon-sc0000007-1491911889:1263623..1265050Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1263623..1265050TCONS_00001067-exon-sc0000007-1510915933:1263623..1265050Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1263623..1265050TCONS_00001067-exon-sc0000007-1575043694:1263623..1265050Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1491911889:1265427..1265665TCONS_00001067-exon-sc0000007-1491911889:1265427..1265665Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1265427..1265665TCONS_00001067-exon-sc0000007-1510915933:1265427..1265665Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1265427..1265665TCONS_00001067-exon-sc0000007-1575043694:1265427..1265665Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1491911889:1266060..1266164TCONS_00001067-exon-sc0000007-1491911889:1266060..1266164Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1266060..1266164TCONS_00001067-exon-sc0000007-1510915933:1266060..1266164Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1266060..1266164TCONS_00001067-exon-sc0000007-1575043694:1266060..1266164Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1491911889:1266501..1266632TCONS_00001067-exon-sc0000007-1491911889:1266501..1266632Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1266501..1266632TCONS_00001067-exon-sc0000007-1510915933:1266501..1266632Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1266501..1266632TCONS_00001067-exon-sc0000007-1575043694:1266501..1266632Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1491911889:1267671..1267805TCONS_00001067-exon-sc0000007-1491911889:1267671..1267805Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1267671..1267805TCONS_00001067-exon-sc0000007-1510915933:1267671..1267805Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1267671..1267805TCONS_00001067-exon-sc0000007-1575043694:1267671..1267805Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1491911889:1268111..1268402TCONS_00001067-exon-sc0000007-1491911889:1268111..1268402Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1268111..1268402TCONS_00001067-exon-sc0000007-1510915933:1268111..1268402Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1268111..1268402TCONS_00001067-exon-sc0000007-1575043694:1268111..1268402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1263623..1268402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0567009 0 0 0 0 0 0 0.0480666 0 0 0 21.1757 19.9082 0 0 6.36929 7.90928 114.547 116.339 40.9416 38.0793 4.98432 9.24883 37.9371 31.4294 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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