TCONS_00001067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001067
Unique NameTCONS_00001067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001067 ID=TCONS_00001067|Name=TCONS_00001067|organism=Clytia hemisphaerica|type=transcript|length=2331bp
CTAGGAaaccaaaaataataatttcttgTCGTGTAGATAACAGAGGCGAG
AATTACTGAAGGCTTTCGTCACACTGTGAACTAAGTGAGAGaaaaattcc
ttttgaaatTAGTTTAACCATCATCCGATGAGAATTTCTTGgatttttca
gttaaaatgcAACCTCAAATTATAACATGATGATATGCAATTAAACTGTC
TGTTATAGAATGTGAACTCCAGTTTAGTTTTATCGATGCATTAGCAATTC
ACTTAAAATGACTAAACTAACAAGTGTGGGTATTTGGAATTCTATGGAAT
TTCAAGGATAATAATAATTACCCATCTCTTAAAATTTAGAGGGGAGTAAT
TATAGActgaattccaaaaaaaaaagacatatttACTATCGACCGAATTT
TCTCAtgctttttttttcgaaaaaaggaGGAGAGAGGTTTAATTCTCTAG
AGACGTGATAACATGCTTGGCATGCTTAAAAATTAGAGATTGGCACGATT
GATCTCTCGCATTCCAAACCAATGTCCACTTTAAGAGGAAGCACTTGTGT
AAACGAAGTGATGTCATTCTATCGCTTTCGTTATCAGAATAAacagaaaa
caatgaaaaattggataaaCAATGATATCATAGACCATACAATGCTTAGA
CTGACCAGAATTTTCTCACGCTATGCTATCCTCTCAATCTTGGGACTCAT
TCATTCACATCAAACTTCAAGGAATTTTTCCAACTTTTTCAGTGTCCACA
ATATGAAAAGGATAAATGTGAAAAAGTAAAACTTAAGCAAGTATCTACTG
ACTTTCCCTACCTTTGCCGAAATTCCCAAAAACGACCCTACCCTACTAGT
ATTGATTTTCTATTGGTGTTTTCCTAGTCGGaacacagacctctacaaag
tTGCAGGTAGTATAGGAGTACGTATTCGTCAATGGATGCCAGCAGCCCAG
TATTTTTTTTCGACCCTACATGGAATATTCCGTACTCCctggattttgaa
tttttccaccGATACTGTTAACTGCAGATAAAAAGTTGTCTCCCCTTGTT
CAGGTTTCTGTACTACTTCATGTCTATGCCTAATCCTTTGATTTGTTTTC
ACCGGGTTGAATGCTTTTTAAACAGGTGGTATGTATGGATAAGCATACTT
GTTTTAGCTTTATTATTCCATAAGTCTCGTGTTGGTGACTTGTAAAGGAG
TAACTTTATTACATCTTGCTACTTTTAGATTGATTCTATTTCATATATTT
GCTAGGATtgttaagaattttctttttcgttaaCAGTTGTTCAAATACGA
GGTTGATTTCACTTGAAGCCGTTCTGAGACAGGTGCCAATAATTTTCTTC
TGAACCATTGATATGTTAAGTCAACCTTGAGTTTGCCGTCTAGCAGCAAA
CTAGAAACGAAATTGAACGGTTGGAAATCATCAAAGGATAAGCGATGATG
CTGCGTTTGATTTGCTTGACCTGGTGTCTGGTGTTGACATCAGGTAAGCC
AGCAACAAAATATCACCAGGAGGACCTCTTGGATATGGTGAAACGTGCGT
TAGAAGGTGGTCTACACCAATCTCTTGATGTTGCAAAACAGTTGGTCTCC
TCTGACTTGGATGCCTTGGAAGGTGATATCAAGAAAAATGGATTCAAGTC
AGGAAATGTCATGAAAGCCCCCAACGCTGTACAAATCAAGAAGAACTTAC
ACAGCGACATCAAAGTCGGAAAATacgaacaaaaaattttcaaatcagtc
AAAGCTGCCGTATGCTCTAAAGGTGAAGGTCATCTTGAAGAGGCAGTTGA
TTCCTTCATGGACTTCTTGGCTAACATTCGAAACAACATCTTGACCAAAG
CCGCTGGCAAATATTTGGATTCCGTTGAGGATTTCGTCGGAACAACTAGT
ATTGattttgatgATGAAGAACGAAAGATCGTGAAAGAGATGGATTTGGA
TGGAGATGTGACAATCGAAAATTTCCATGACGAAATCAAAAATGCTGTCT
CTATCTGCAAAAAAGATTATGTAGGATGCAAGGACGATGATTCAGACGTT
GGAGAATACGTCGATGTTAAAGATCAAGTCGATGACATTATTGATACCCT
TCAAAAGAAattggaaaatgttcgaaaggCTGCCAgctaaatattttctt
ctttgtaTAGTTATTgtgttaaaaaacattttttttataaaaatctgtAA
ATATATTTAATTCAAAGGCTTCTAAAAAACCATCGCTTATTCTTTCGTTT
GATTTTAACCAGAGCTTGCCAGGCTAAGACACATTATAGTCGCTTCTAAA
CATGCTCTAAATCATTAATTTTGGTGAgaac
Run BLAST on NCBI

transcript from alignment at sc0000007:1263623..1268402+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001067 ID=TCONS_00001067|Name=TCONS_00001067|organism=Clytia hemisphaerica|type=transcript|length=4780bp|location=Sequence derived from alignment at sc0000007:1263623..1268402+ (Clytia hemisphaerica)
CTAGGAaaccaaaaataataatttcttgTCGTGTAGATAACAGAGGCGAG
AATTACTGAAGGCTTTCGTCACACTGTGAACTAAGTGAGAGaaaaattcc
ttttgaaatTAGTTTAACCATCATCCGATGAGAATTTCTTGgatttttca
gttaaaatgcAACCTCAAATTATAACATGATGATATGCAATTAAACTGTC
TGTTATAGAATGTGAACTCCAGTTTAGTTTTATCGATGCATTAGCAATTC
ACTTAAAATGACTAAACTAACAAGTGTGGGTATTTGGAATTCTATGGAAT
TTCAAGGATAATAATAATTACCCATCTCTTAAAATTTAGAGGGGAGTAAT
TATAGActgaattccaaaaaaaaaagacatatttACTATCGACCGAATTT
TCTCAtgctttttttttcgaaaaaaggaGGAGAGAGGTTTAATTCTCTAG
AGACGTGATAACATGCTTGGCATGCTTAAAAATTAGAGATTGGCACGATT
GATCTCTCGCATTCCAAACCAATGTCCACTTTAAGAGGAAGCACTTGTGT
AAACGAAGTGATGTCATTCTATCGCTTTCGTTATCAGAATAAacagaaaa
caatgaaaaattggataaaCAATGATATCATAGACCATACAATGCTTAGA
CTGACCAGAATTTTCTCACGCTATGCTATCCTCTCAATCTTGGGACTCAT
TCATTCACATCAAACTTCAAGGAATTTTTCCAACTTTTTCAGTGTCCACA
ATATGAAAAGGATAAATGTGAAAAAGTAAAACTTAAGCAAGTATCTACTG
ACTTTCCCTACCTTTGCCGAAATTCCCAAAAACGACCCTACCCTACTAGT
ATTGATTTTCTATTGGTGTTTTCCTAGTCGGaacacagacctctacaaag
tTGCAGGTAGTATAGGAGTACGTATTCGTCAATGGATGCCAGCAGCCCAG
TATTTTTTTTCGACCCTACATGGAATATTCCGTACTCCctggattttgaa
tttttccaccGATACTGTTAACTGCAGATAAAAAGTTGTCTCCCCTTGTT
CAGGTTTCTGTACTACTTCATGTCTATGCCTAATCCTTTGATTTGTTTTC
ACCGGGTTGAATGCTTTTTAAACAGGTGGTATGTATGGATAAGCATACTT
GTTTTAGCTTTATTATTCCATAAGTCTCGTGTTGGTGACTTGTAAAGGAG
TAACTTTATTACATCTTGCTACTTTTAGATTGATTCTATTTCATATATTT
GCTAGGATtgttaagaattttctttttcgttaaCAGTTGTTCAAATACGA
GGTTGATTTCACTTGAAGCCGTTCTGAGACAGGTGCCAATAATTTTCTTC
TGAACCATTGATATGTTAAGTCAACCTTGAGTTTGCCGTCTAGCAGCAAA
CTAGAAACGAAATTGAACGGTTGGAAATGTATGTAAATGAAACACTTTCG
TACCCAATCCTTTGGTTACACATTCTTCATGAAGGtgtgaaaaataaaga
tttaaagTTGAAATTAAAGAATATTTCCTGTTCATTTGAAATGCAAGTGC
CATCACATCAGCTGCTCTCAAATGTTTTTTCTCGATAACTTTGGATAAAT
ATCATCGCTATATATTCTTTACTTTTCTAAAATTGATGCATCAAACCTTT
ATCAGTGGAGCAGACTGCTACATACATTTTGTAGTTAGGGGGGGGTAGGA
TCTTTGCGACTTGTGTATCTAAAATATCTACATAGTGTTTAATACTGCTG
ACAGAGGGTGGGTTACAATACACTTTGTGATGACTTTTCCCATTTCCATT
TTAGCATCAAAGGATAAGCGATGATGCTGCGTTTGATTTGCTTGACCTGG
TGTCTGGTGTTGACATCAGGTAAGCCAGCAACAAAATATCACCAGGAGGA
CCTCTTGGATATGGTGAAACGTGCGTTAGAAGGTGGTCTACACCAATCTC
TTGATGTTGCAAAACAGTTGGTCTCCTCTGACTTGGATGCCTTGGAAGGT
GATATCAAGAAAAATGGATTCAAGTCAGGAAATGTCATGAAAGGTTGGTT
TTAATTCTTTATTATATATATGGTTGGTAAGTCTGGCAATATGAGTCTAG
AGTATAGAGAATTACGGCATTGTTGACACCTGCATGTCCGGGGGGGGgcg
cactcgattttgaaaacgaccgtacgttcggccaaaaatcaggtctctaa
aatcggacccttacagtgcaggaaaaattttacacccttacagtgcactt
tttcccacatgctcacaaatcaacccttacaatgcactttccaaagtcca
aaaaacctacccttaagggccgcacgtccggtaggtcacttacctccCTC
CCCCCGGGCTGCATGTGAAATAACATTCCTCAAAAGTTTATTTGATATTT
ACATTCAACGCGACATTTATTACGCTTATCTTTTCAGCCCCCAACGCTGT
ACAAATCAAGAAGAACTTACACAGCGACATCAAAGTCGGAAAATacgaac
aaaaaattttcaaatcagtcAAAGCTGCCGTATGCTCTAAAGGTACTGAC
GGTAAATTCACTTTCTTCTAGATTATTTCATCTGAGATAAAATTCTGAAC
ACAATACAACCGATCTTCTTTAATAATTTAACGCTCAACTATTGTATTAG
CTCTTTATCTCATCTACCTTCAATACCAGGACTGACAGAAGCTTAACTTT
GATCTTAGCAAGGATCTAGCTCTGGCATCTCTTTTTGAACGACTAACGAA
CGGAGAGGGACGGTTGATGGAACTATCGTTAAACATATTCAAAAGTGTCA
AGCAAATGGTTTGTTCTAGTAGATGAAGAATTACTTTCATTGCTCAGTTG
AGTTTTTATACAGCTGTTTTTTGTTTAGGTGAAGGTCATCTTGAAGAGGC
AGTTGATTCCTTCATGGACTTCTTGGCTAACATTCGAAACAACATCTTGA
CCAAAGCCGCTGGCAAATATTTGGATTCCGTTGAGGATTTCGTCGGAACA
ACTAGTATTGGTATGTGTTGTAATCTGTAATTTTCCAAGTCgatattttt
tctggaaatggaAAGCTACGATATAGTAGACTCTCGCTTATCCGAGCTTT
TATGTCTTCTATAAACTAGAGTCTaattctgactgaactttgctttttga
tgattttgatggcgctgagtctagtgaagtagactagaggacatcgccat
tttggattttttcactttcgttctatacgaaaacaacaaaacaataaaat
atatgctaaaatccatcaaagtttatgaaactataaaaaacatgaaaata
cccccaaaatttgaaaagaattggTCTATTGGAcatggttttctgtttgt
ttttctccaaaaagggactggatctagtggcatgtatttgctaccacctc
aagcaaagccaaaatatgAAGGCTGCCAAATTAcgccgggccacttatca
gcaccatccagtctatcaaaaagctataagtggccCCCGGGCTATGTCtt
ctatagaccttttcataaatacGTCACGAACATGAtcgcttgcctcgtat
tcaaacaattaccatggtgatatGTCCTTTGagaaatgaaatgatttttt
tatgaatagaaagtagttttattaaaatccgctgggagataatcaccatg
gcaatattttcaaaacgaggcaagtgatgttcgtaacgtaatttattaaa
aggtctattattcgaatctttctataattcgaactaattcccagtccccg
tcaaggaggagTCCCTCTTGAGCCTACTTTCTATGATTCGAATGTCTCTG
TTATTCGAAAAAATAACATTCCCCGCTCGAGGTTTGAGTAAACGAAAGTC
AACAACTGTACTTTCAATTCGTGTTGGCTTAAAACTGATAAAATACTGAT
AAAATATATGTTGTTTAAGAGAAAGGGATAATTGTTTATTAGCTGCAAAT
ATCGCTAATATGAAATTGCGTTACTCgagccaaaatgaaaaaaaatacgt
TACTCACCGTTATTGAATTTCTCTGAATACCCATCCtctgtttttcagat
tttgatgATGAAGAACGAAAGATCGTGAAAGAGATGGATTTGGATGGAGA
TGTGACAATCGAAAATTTCCATGACGAAATCAAAAATGCTGTCTCTATCT
GCAAAAAAGATTATGTAGGATGCAAGGACGATGGTAAGAAATCatctttt
acacccctgtctcaataacCTGGTTAATAGCCACtgaaataaaatgaaga
agCTATTTTCCTTGTTTCATACTCAtataaccctgtctcaaaaatcatca
aaagtttgatgaaaaaaattcaacgtGAAAAGATGTTGGTAGTATTTGTT
TCCCTCTTGAAATCTTTGGTTAAGATTGCCTCTGATTGTTGAAGGTTATA
ATACTGTGTTCTGTTGTAATGTTGTAAATAGAAGTTACATACCCGATCAA
GAAAATAACACTTTAACAATAACTCTTTCTTTCTTTAGATTCAGACGTTG
GAGAATACGTCGATGTTAAAGATCAAGTCGATGACATTATTGATACCCTT
CAAAAGAAattggaaaatgttcgaaaggCTGCCAgctaaatattttcttc
tttgtaTAGTTATTgtgttaaaaaacattttttttataaaaatctgtAAA
TATATTTAATTCAAAGGCTTCTAAAAAACCATCGCTTATTCTTTCGTTTG
ATTTTAACCAGAGCTTGCCAGGCTAAGACACATTATAGTCGCTTCTAAAC
ATGCTCTAAATCATTAATTTTGGTGAgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000604XLOC_000604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001067-exon-sc0000007-1491911889:1263623..1265050TCONS_00001067-exon-sc0000007-1491911889:1263623..1265050Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1263623..1265050TCONS_00001067-exon-sc0000007-1510915933:1263623..1265050Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1263623..1265050TCONS_00001067-exon-sc0000007-1575043694:1263623..1265050Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1491911889:1265427..1265665TCONS_00001067-exon-sc0000007-1491911889:1265427..1265665Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1265427..1265665TCONS_00001067-exon-sc0000007-1510915933:1265427..1265665Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1265427..1265665TCONS_00001067-exon-sc0000007-1575043694:1265427..1265665Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1491911889:1266060..1266164TCONS_00001067-exon-sc0000007-1491911889:1266060..1266164Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1266060..1266164TCONS_00001067-exon-sc0000007-1510915933:1266060..1266164Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1266060..1266164TCONS_00001067-exon-sc0000007-1575043694:1266060..1266164Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1491911889:1266501..1266632TCONS_00001067-exon-sc0000007-1491911889:1266501..1266632Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1266501..1266632TCONS_00001067-exon-sc0000007-1510915933:1266501..1266632Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1266501..1266632TCONS_00001067-exon-sc0000007-1575043694:1266501..1266632Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1491911889:1267671..1267805TCONS_00001067-exon-sc0000007-1491911889:1267671..1267805Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1267671..1267805TCONS_00001067-exon-sc0000007-1510915933:1267671..1267805Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1267671..1267805TCONS_00001067-exon-sc0000007-1575043694:1267671..1267805Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1491911889:1268111..1268402TCONS_00001067-exon-sc0000007-1491911889:1268111..1268402Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1510915933:1268111..1268402TCONS_00001067-exon-sc0000007-1510915933:1268111..1268402Clytia hemisphaericaexon
TCONS_00001067-exon-sc0000007-1575043694:1268111..1268402TCONS_00001067-exon-sc0000007-1575043694:1268111..1268402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1263623..1268402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0567009	0	0	0	0	0	0	0.0480666	0	0	0	21.1757	19.9082	0	0	6.36929	7.90928	114.547	116.339	40.9416	38.0793	4.98432	9.24883	37.9371	31.4294	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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