Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00001069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001069
Unique NameTCONS_00001069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001069 ID=TCONS_00001069|Name=TCONS_00001069|organism=Clytia hemisphaerica|type=transcript|length=939bp
ATTTCACTTGAAGCCGTTCTGAGACAGCATCAAAGGATAAGCGATGATGC
TGCGTTTGATTTGCTTGACCTGGTGTCTGGTGTTGACATCAGGTAAGCCA
GCAACAAAATATCACCAGGAGGACCTCTTGGATATGGTGAAACGTGCGTT
AGAAGGTGGTCTACACCAATCTCTTGATGTTGCAAAACAGTTGGTCTCCT
CTGACTTGGATGCCTTGGAAGGTGATATCAAGAAAAATGGATTCAAGTCA
GGAAATGTCATGAAAGCCCCCAACGCTGTACAAATCAAGAAGAACTTACA
CAGCGACATCAAAGTCGGAAAATacgaacaaaaaattttcaaatcagtcA
AAGCTGCCGTATGCTCTAAAGGTACTGACGGTGAAGGTCATCTTGAAGAG
GCAGTTGATTCCTTCATGGACTTCTTGGCTAACATTCGAAACAACATCTT
GACCAAAGCCGCTGGCAAATATTTGGATTCCGTTGAGGATTTCGTCGGAA
CAACTAGTATTGattttgatgATGAAGAACGAAAGATCGTGAAAGAGATG
GATTTGGATGGAGATGTGACAATCGAAAATTTCCATGACGAAATCAAAAA
TGCTGTCTCTATCTGCAAAAAAGATTATGTAGGATGCAAGGACGATGATT
CAGACGTTGGAGAATACGTCGATGTTAAAGATCAAGTCGATGACATTATT
GATACCCTTCAAAAGAAattggaaaatgttcgaaaggCTGCCAgctaaat
attttcttctttgtaTAGTTATTgtgttaaaaaacattttttttataaaa
atctgtAAATATATTTAATTCAAAGGCTTCTAAAAAACCATCGCTTATTC
TTTCGTTTGATTTTAACCAGAGCTTGCCAGGCTAAGACACATTATAGTCG
CTTCTAAACATGCTCTAAATCATTAATTTTGGTGAgaac
Run BLAST on NCBI

protein sequence of TCONS_00001069-protein

>TCONS_00001069-protein ID=TCONS_00001069-protein|Name=TCONS_00001069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MMLRLICLTWCLVLTSGKPATKYHQEDLLDMVKRALEGGLHQSLDVAKQL
VSSDLDALEGDIKKNGFKSGNVMKAPNAVQIKKNLHSDIKVGKYEQKIFK
SVKAAVCSKGTDGEGHLEEAVDSFMDFLANIRNNILTKAAGKYLDSVEDF
VGTTSIDFDDEERKIVKEMDLDGDVTIENFHDEIKNAVSICKKDYVGCKD
DDSDVGEYVDVKDQVDDIIDTLQKKLENVRKAAS
Run BLAST on NCBI

transcript from alignment at sc0000007:1264928..1268402+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001069 ID=TCONS_00001069|Name=TCONS_00001069|organism=Clytia hemisphaerica|type=transcript|length=3475bp|location=Sequence derived from alignment at sc0000007:1264928..1268402+ (Clytia hemisphaerica)
ATTTCACTTGAAGCCGTTCTGAGACAGGTGCCAATAATTTTCTTCTGAAC CATTGATATGTTAAGTCAACCTTGAGTTTGCCGTCTAGCAGCAAACTAGA AACGAAATTGAACGGTTGGAAATGTATGTAAATGAAACACTTTCGTACCC AATCCTTTGGTTACACATTCTTCATGAAGGtgtgaaaaataaagatttaa agTTGAAATTAAAGAATATTTCCTGTTCATTTGAAATGCAAGTGCCATCA CATCAGCTGCTCTCAAATGTTTTTTCTCGATAACTTTGGATAAATATCAT CGCTATATATTCTTTACTTTTCTAAAATTGATGCATCAAACCTTTATCAG TGGAGCAGACTGCTACATACATTTTGTAGTTAGGGGGGGGTAGGATCTTT GCGACTTGTGTATCTAAAATATCTACATAGTGTTTAATACTGCTGACAGA GGGTGGGTTACAATACACTTTGTGATGACTTTTCCCATTTCCATTTTAGC ATCAAAGGATAAGCGATGATGCTGCGTTTGATTTGCTTGACCTGGTGTCT GGTGTTGACATCAGGTAAGCCAGCAACAAAATATCACCAGGAGGACCTCT TGGATATGGTGAAACGTGCGTTAGAAGGTGGTCTACACCAATCTCTTGAT GTTGCAAAACAGTTGGTCTCCTCTGACTTGGATGCCTTGGAAGGTGATAT CAAGAAAAATGGATTCAAGTCAGGAAATGTCATGAAAGGTTGGTTTTAAT TCTTTATTATATATATGGTTGGTAAGTCTGGCAATATGAGTCTAGAGTAT AGAGAATTACGGCATTGTTGACACCTGCATGTCCGGGGGGGGgcgcactc gattttgaaaacgaccgtacgttcggccaaaaatcaggtctctaaaatcg gacccttacagtgcaggaaaaattttacacccttacagtgcactttttcc cacatgctcacaaatcaacccttacaatgcactttccaaagtccaaaaaa cctacccttaagggccgcacgtccggtaggtcacttacctccCTCCCCCC GGGCTGCATGTGAAATAACATTCCTCAAAAGTTTATTTGATATTTACATT CAACGCGACATTTATTACGCTTATCTTTTCAGCCCCCAACGCTGTACAAA TCAAGAAGAACTTACACAGCGACATCAAAGTCGGAAAATacgaacaaaaa attttcaaatcagtcAAAGCTGCCGTATGCTCTAAAGGTACTGACGGTAA ATTCACTTTCTTCTAGATTATTTCATCTGAGATAAAATTCTGAACACAAT ACAACCGATCTTCTTTAATAATTTAACGCTCAACTATTGTATTAGCTCTT TATCTCATCTACCTTCAATACCAGGACTGACAGAAGCTTAACTTTGATCT TAGCAAGGATCTAGCTCTGGCATCTCTTTTTGAACGACTAACGAACGGAG AGGGACGGTTGATGGAACTATCGTTAAACATATTCAAAAGTGTCAAGCAA ATGGTTTGTTCTAGTAGATGAAGAATTACTTTCATTGCTCAGTTGAGTTT TTATACAGCTGTTTTTTGTTTAGGTGAAGGTCATCTTGAAGAGGCAGTTG ATTCCTTCATGGACTTCTTGGCTAACATTCGAAACAACATCTTGACCAAA GCCGCTGGCAAATATTTGGATTCCGTTGAGGATTTCGTCGGAACAACTAG TATTGGTATGTGTTGTAATCTGTAATTTTCCAAGTCgatattttttctgg aaatggaAAGCTACGATATAGTAGACTCTCGCTTATCCGAGCTTTTATGT CTTCTATAAACTAGAGTCTaattctgactgaactttgctttttgatgatt ttgatggcgctgagtctagtgaagtagactagaggacatcgccattttgg attttttcactttcgttctatacgaaaacaacaaaacaataaaatatatg ctaaaatccatcaaagtttatgaaactataaaaaacatgaaaataccccc aaaatttgaaaagaattggTCTATTGGAcatggttttctgtttgtttttc tccaaaaagggactggatctagtggcatgtatttgctaccacctcaagca aagccaaaatatgAAGGCTGCCAAATTAcgccgggccacttatcagcacc atccagtctatcaaaaagctataagtggccCCCGGGCTATGTCttctata gaccttttcataaatacGTCACGAACATGAtcgcttgcctcgtattcaaa caattaccatggtgatatGTCCTTTGagaaatgaaatgatttttttatga atagaaagtagttttattaaaatccgctgggagataatcaccatggcaat attttcaaaacgaggcaagtgatgttcgtaacgtaatttattaaaaggtc tattattcgaatctttctataattcgaactaattcccagtccccgtcaag gaggagTCCCTCTTGAGCCTACTTTCTATGATTCGAATGTCTCTGTTATT CGAAAAAATAACATTCCCCGCTCGAGGTTTGAGTAAACGAAAGTCAACAA CTGTACTTTCAATTCGTGTTGGCTTAAAACTGATAAAATACTGATAAAAT ATATGTTGTTTAAGAGAAAGGGATAATTGTTTATTAGCTGCAAATATCGC TAATATGAAATTGCGTTACTCgagccaaaatgaaaaaaaatacgtTACTC ACCGTTATTGAATTTCTCTGAATACCCATCCtctgtttttcagattttga tgATGAAGAACGAAAGATCGTGAAAGAGATGGATTTGGATGGAGATGTGA CAATCGAAAATTTCCATGACGAAATCAAAAATGCTGTCTCTATCTGCAAA AAAGATTATGTAGGATGCAAGGACGATGGTAAGAAATCatcttttacacc cctgtctcaataacCTGGTTAATAGCCACtgaaataaaatgaagaagCTA TTTTCCTTGTTTCATACTCAtataaccctgtctcaaaaatcatcaaaagt ttgatgaaaaaaattcaacgtGAAAAGATGTTGGTAGTATTTGTTTCCCT CTTGAAATCTTTGGTTAAGATTGCCTCTGATTGTTGAAGGTTATAATACT GTGTTCTGTTGTAATGTTGTAAATAGAAGTTACATACCCGATCAAGAAAA TAACACTTTAACAATAACTCTTTCTTTCTTTAGATTCAGACGTTGGAGAA TACGTCGATGTTAAAGATCAAGTCGATGACATTATTGATACCCTTCAAAA GAAattggaaaatgttcgaaaggCTGCCAgctaaatattttcttctttgt aTAGTTATTgtgttaaaaaacattttttttataaaaatctgtAAATATAT TTAATTCAAAGGCTTCTAAAAAACCATCGCTTATTCTTTCGTTTGATTTT AACCAGAGCTTGCCAGGCTAAGACACATTATAGTCGCTTCTAAACATGCT CTAAATCATTAATTTTGGTGAgaac

Coding sequence (CDS) from alignment at sc0000007:1264928..1268402+

>TCONS_00001069 ID=TCONS_00001069|Name=TCONS_00001069|organism=Clytia hemisphaerica|type=CDS|length=3525bp|location=Sequence derived from alignment at sc0000007:1264928..1268402+ (Clytia hemisphaerica)
ATGATGCTGCGTTTGATTTGCTTGACCTGGTGTCTGGTGTTGACATCAGG
TAAGCCAGCAACAAAATATCACCAGGAGGACCTCTTGGATATGGTGAAAC
GTGCGTTAGAAGGTGGTCTACACCAATCTCTTGATGTTGCAAAACAGTTG
GTCTCCTCTGACTTGGATGCCTTGGAAGGTGATATCAAGAAAAATGGATT
CAAGTCAGGAAATGTCATGAAAGCCCCCAACGCTGTACAAATCAAGAAGA
ACTTACACAGCGACATCAAAGTCGGAAAATacgaacaaaaaattttcaaa
tcagtcAAAGCTGCCGTATGCTCTAAAGGTACTGACGGTGAAGGTCATCT
TGAAGAGGCAGTTGATTCCTTCATGGACTTCTTGGCTAACATTCGAAACA
ACATCTTGACCAAAGCCGCTGGCAAATATTTGGATTCCGTTGAGGATTTC
GTCGGAACAACTAGTATTGattttgatgATGAAGAACGAAAGATCGTGAA
AGAGATGGATTTGGATGGAGATGTGACAATCGAAAATTTCCATGACGAAA
TCAAAAATGCTGTCTCTATCTGCAAAAAAGATTATGTAGGATGCAAGGAC
GATGATTCAGACGTTGGAGAATACGTCGATGTTAAAGATCAAGTCGATGA
CATTATTGATACCCTTCAAAAGAAattggaaaatgttcgaaaggCTGCCA
gctaaATGATGCTGCGTTTGATTTGCTTGACCTGGTGTCTGGTGTTGACA
TCAGGTAAGCCAGCAACAAAATATCACCAGGAGGACCTCTTGGATATGGT
GAAACGTGCGTTAGAAGGTGGTCTACACCAATCTCTTGATGTTGCAAAAC
AGTTGGTCTCCTCTGACTTGGATGCCTTGGAAGGTGATATCAAGAAAAAT
GGATTCAAGTCAGGAAATGTCATGAAAGCCCCCAACGCTGTACAAATCAA
GAAGAACTTACACAGCGACATCAAAGTCGGAAAATacgaacaaaaaattt
tcaaatcagtcAAAGCTGCCGTATGCTCTAAAGGTACTGACGGTGAAGGT
CATCTTGAAGAGGCAGTTGATTCCTTCATGGACTTCTTGGCTAACATTCG
AAACAACATCTTGACCAAAGCCGCTGGCAAATATTTGGATTCCGTTGAGG
ATTTCGTCGGAACAACTAGTATTGattttgatgATGAAGAACGAAAGATC
GTGAAAGAGATGGATTTGGATGGAGATGTGACAATCGAAAATTTCCATGA
CGAAATCAAAAATGCTGTCTCTATCTGCAAAAAAGATTATGTAGGATGCA
AGGACGATGATTCAGACGTTGGAGAATACGTCGATGTTAAAGATCAAGTC
GATGACATTATTGATACCCTTCAAAAGAAattggaaaatgttcgaaaggC
TGCCAgctaaATGATGCTGCGTTTGATTTGCTTGACCTGGTGTCTGGTGT
TGACATCAGGTAAGCCAGCAACAAAATATCACCAGGAGGACCTCTTGGAT
ATGGTGAAACGTGCGTTAGAAGGTGGTCTACACCAATCTCTTGATGTTGC
AAAACAGTTGGTCTCCTCTGACTTGGATGCCTTGGAAGGTGATATCAAGA
AAAATGGATTCAAGTCAGGAAATGTCATGAAAGCCCCCAACGCTGTACAA
ATCAAGAAGAACTTACACAGCGACATCAAAGTCGGAAAATacgaacaaaa
aattttcaaatcagtcAAAGCTGCCGTATGCTCTAAAGGTACTGACGGTG
AAGGTCATCTTGAAGAGGCAGTTGATTCCTTCATGGACTTCTTGGCTAAC
ATTCGAAACAACATCTTGACCAAAGCCGCTGGCAAATATTTGGATTCCGT
TGAGGATTTCGTCGGAACAACTAGTATTGattttgatgATGAAGAACGAA
AGATCGTGAAAGAGATGGATTTGGATGGAGATGTGACAATCGAAAATTTC
CATGACGAAATCAAAAATGCTGTCTCTATCTGCAAAAAAGATTATGTAGG
ATGCAAGGACGATGATTCAGACGTTGGAGAATACGTCGATGTTAAAGATC
AAGTCGATGACATTATTGATACCCTTCAAAAGAAattggaaaatgttcga
aaggCTGCCAgctaaATGATGCTGCGTTTGATTTGCTTGACCTGGTGTCT
GGTGTTGACATCAGGTAAGCCAGCAACAAAATATCACCAGGAGGACCTCT
TGGATATGGTGAAACGTGCGTTAGAAGGTGGTCTACACCAATCTCTTGAT
GTTGCAAAACAGTTGGTCTCCTCTGACTTGGATGCCTTGGAAGGTGATAT
CAAGAAAAATGGATTCAAGTCAGGAAATGTCATGAAAGCCCCCAACGCTG
TACAAATCAAGAAGAACTTACACAGCGACATCAAAGTCGGAAAATacgaa
caaaaaattttcaaatcagtcAAAGCTGCCGTATGCTCTAAAGGTACTGA
CGGTGAAGGTCATCTTGAAGAGGCAGTTGATTCCTTCATGGACTTCTTGG
CTAACATTCGAAACAACATCTTGACCAAAGCCGCTGGCAAATATTTGGAT
TCCGTTGAGGATTTCGTCGGAACAACTAGTATTGattttgatgATGAAGA
ACGAAAGATCGTGAAAGAGATGGATTTGGATGGAGATGTGACAATCGAAA
ATTTCCATGACGAAATCAAAAATGCTGTCTCTATCTGCAAAAAAGATTAT
GTAGGATGCAAGGACGATGATTCAGACGTTGGAGAATACGTCGATGTTAA
AGATCAAGTCGATGACATTATTGATACCCTTCAAAAGAAattggaaaatg
ttcgaaaggCTGCCAgctaaATGATGCTGCGTTTGATTTGCTTGACCTGG
TGTCTGGTGTTGACATCAGGTAAGCCAGCAACAAAATATCACCAGGAGGA
CCTCTTGGATATGGTGAAACGTGCGTTAGAAGGTGGTCTACACCAATCTC
TTGATGTTGCAAAACAGTTGGTCTCCTCTGACTTGGATGCCTTGGAAGGT
GATATCAAGAAAAATGGATTCAAGTCAGGAAATGTCATGAAAGCCCCCAA
CGCTGTACAAATCAAGAAGAACTTACACAGCGACATCAAAGTCGGAAAAT
acgaacaaaaaattttcaaatcagtcAAAGCTGCCGTATGCTCTAAAGGT
ACTGACGGTGAAGGTCATCTTGAAGAGGCAGTTGATTCCTTCATGGACTT
CTTGGCTAACATTCGAAACAACATCTTGACCAAAGCCGCTGGCAAATATT
TGGATTCCGTTGAGGATTTCGTCGGAACAACTAGTATTGattttgatgAT
GAAGAACGAAAGATCGTGAAAGAGATGGATTTGGATGGAGATGTGACAAT
CGAAAATTTCCATGACGAAATCAAAAATGCTGTCTCTATCTGCAAAAAAG
ATTATGTAGGATGCAAGGACGATGATTCAGACGTTGGAGAATACGTCGAT
GTTAAAGATCAAGTCGATGACATTATTGATACCCTTCAAAAGAAattgga
aaatgttcgaaaggCTGCCAgctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000604XLOC_000604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001069-exon-sc0000007-1491911889:1264928..1264954TCONS_00001069-exon-sc0000007-1491911889:1264928..1264954Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1510915933:1264928..1264954TCONS_00001069-exon-sc0000007-1510915933:1264928..1264954Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1575043694:1264928..1264954TCONS_00001069-exon-sc0000007-1575043694:1264928..1264954Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1491911889:1265427..1265665TCONS_00001069-exon-sc0000007-1491911889:1265427..1265665Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1510915933:1265427..1265665TCONS_00001069-exon-sc0000007-1510915933:1265427..1265665Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1575043694:1265427..1265665TCONS_00001069-exon-sc0000007-1575043694:1265427..1265665Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1491911889:1266060..1266173TCONS_00001069-exon-sc0000007-1491911889:1266060..1266173Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1510915933:1266060..1266173TCONS_00001069-exon-sc0000007-1510915933:1266060..1266173Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1575043694:1266060..1266173TCONS_00001069-exon-sc0000007-1575043694:1266060..1266173Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1491911889:1266501..1266632TCONS_00001069-exon-sc0000007-1491911889:1266501..1266632Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1510915933:1266501..1266632TCONS_00001069-exon-sc0000007-1510915933:1266501..1266632Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1575043694:1266501..1266632TCONS_00001069-exon-sc0000007-1575043694:1266501..1266632Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1491911889:1267671..1267805TCONS_00001069-exon-sc0000007-1491911889:1267671..1267805Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1510915933:1267671..1267805TCONS_00001069-exon-sc0000007-1510915933:1267671..1267805Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1575043694:1267671..1267805TCONS_00001069-exon-sc0000007-1575043694:1267671..1267805Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1491911889:1268111..1268402TCONS_00001069-exon-sc0000007-1491911889:1268111..1268402Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1510915933:1268111..1268402TCONS_00001069-exon-sc0000007-1510915933:1268111..1268402Clytia hemisphaericaexon
TCONS_00001069-exon-sc0000007-1575043694:1268111..1268402TCONS_00001069-exon-sc0000007-1575043694:1268111..1268402Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001069-proteinTCONS_00001069-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1264928..1268402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.314 13.4389 8.1405 6.75934 0.654989 0.525402 0.099739 0.117273 1.01348 2.03826 0.833185 1.80593 274.027 232.723 0.772734 1.13203 97.9581 124.424 1353.7 1518.52 599.644 597.02 149.883 215.074 264.892 250.738 0.599848 0.643544 1.06176 0.266185
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top