TCONS_00068771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068771
Unique NameTCONS_00068771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068771 ID=TCONS_00068771|Name=TCONS_00068771|organism=Clytia hemisphaerica|type=transcript|length=1751bp
GCTGGAGTAGaggaagaaaaatttcaattactTTTTGATCGCTTTCTact
agtttttttttctatgtttgtcAATGAGAGGGAATAAATTTAAGACCGTG
TTTACAGTTAcaacagttttgaaaatttacttAAGGTCCTTCTTATCTAT
ATGGATGTGGAAAATATGCGAGGAGAAAATGTTTGTTTAACCGTTTAGCA
TAACTTTGATAAaacattgacttttttttgccattttgaatAAAAGTTGT
CATTGAATTGAGTACTTCATTTGATTCATTCTTGACATTGAGGTGACACG
GGAAAGAGGAAATCAAATGATACATAGATTTTCGGTGCATGGTTGACGAG
CTATGAAGGAAGACACTAGACAAAGAACGAAGAGTGGAGCCAAACCTGAT
GTTCGCCTTGCTTTGATTGGCGCACCGAAAGTCGGGAAATCAGcaaTCAG
TGTTCGATTTCTGACGCGAAGATTCATCCACGAATACCAGAGAAGCGTGG
AACATACTTATCGTAGAAACCTGGAGTTTGGAAATGAAGTCATTGAATAT
GTGTTAAGGGATTCATCAGGAACGGTCGAGAATAACAATAATTTGATCCA
CTGGGCGTCGTGTGTCGCAGTGATTTACTCCATCTCAGACAAGAACAGTT
TCAATGTTGCATCTGCACTCCTCGAAGAAATCAACTTCATTTACAACagt
aaaaattacaaacaaaatggACCAAAAAGTATCGGCCTTATTGGTAACAA
GAAAGACTTAAACCATCTGCGGGAAGTTTCCTTGAGAGAAGCTAAAGAAT
TGGCGAATAAACATGGCGCGAATTTCTGGGAAGTCTCCGCTTCTGATGAT
TTTCATTCAACTCATGCACCTTTAAACTCCATGGTTGTTGAAGCttattt
gaataatttgacATTGAAAACTGTAAAAGGGGGACTGGTTTCTCCTGGAT
CACATGTGAAAGGTCTCGATGAAAACATCAGAAACGAATTAATTTCGAAT
CAATCGATTGAAAGCGATGAAGGTGGCTTACAACCATCTACACCATTCAA
AATTCCCATGAATCCTTTCGACTTTTCAAGCGAGAAACGAAAATCGTTTA
AAGATCGCAAGAAATTAGATTTGAAGTTAAACCAACTAAAAAGTGAAAGT
CTAAAGAAGATCTCAATGGGAAGGACTTCTTTGGATAACGACAACTTTGA
CTCCAATAACAATACAAATAGTAATTCACCAGATACTATGAGTCTGAGCA
CAGACAATGACGAACCAATTCGGACAAGTAGTTGGTCAAAGAAGGACAAA
AAACGAAAGGAGAAATCGAAAGAATCAAAAGAACTGAAGGAActtaaaga
aatgaaattaaCAGAAATGAATGGAGTTGGACACGAAGaaatagaacaaa
agaaaagtaattTACAAAGATGTCACAGTCTCACTGACctcaaaagttta
gaaaaagAACACCATTGCGAGGGAGTTGATTCAGAAAACAAGGAAGACAT
TGAACCTCACGATGTAGAGGATGACAAACTAACTGATTTGATTTCACCTT
CCAGTAAAATTACCAGCAGTTTCAGCAGGTTGTCTTCATACTCTGCAGGC
TCTGGCGTCCCCATTAAAAGTCCACGACCCCGCAAAGAGCGACGCAAAAC
CACTGGCTTGACCATGACTCCCGAACATATAGAAACAGATCTCGCGTCCC
CCCGAAGCCCCGAACCTCCTCGAGAACAATCCAGATTCAAACGAGCCGAA
A
Run BLAST on NCBI

protein sequence of TCONS_00068771-protein

>TCONS_00068771-protein ID=TCONS_00068771-protein|Name=TCONS_00068771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
MKEDTRQRTKSGAKPDVRLALIGAPKVGKSAISVRFLTRRFIHEYQRSVE
HTYRRNLEFGNEVIEYVLRDSSGTVENNNNLIHWASCVAVIYSISDKNSF
NVASALLEEINFIYNSKNYKQNGPKSIGLIGNKKDLNHLREVSLREAKEL
ANKHGANFWEVSASDDFHSTHAPLNSMVVEAYLNNLTLKTVKGGLVSPGS
HVKGLDENIRNELISNQSIESDEGGLQPSTPFKIPMNPFDFSSEKRKSFK
DRKKLDLKLNQLKSESLKKISMGRTSLDNDNFDSNNNTNSNSPDTMSLST
DNDEPIRTSSWSKKDKKRKEKSKESKELKELKEMKLTEMNGVGHEEIEQK
KSNLQRCHSLTDLKSLEKEHHCEGVDSENKEDIEPHDVEDDKLTDLISPS
SKITSSFSRLSSYSAGSGVPIKSPRPRKERRKTTGLTMTPEHIETDLASP
RSPEPPREQSRFKRAE
Run BLAST on NCBI

transcript from alignment at scaffold_49:280831..284626+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068771 ID=TCONS_00068771|Name=TCONS_00068771|organism=Clytia hemisphaerica|type=transcript|length=3796bp|location=Sequence derived from alignment at scaffold_49:280831..284626+ (Clytia hemisphaerica)
GCTGGAGTAGaggaagaaaaatttcaattactTTTTGATCGCTTTCTact
agtttttttttctatgtttgtcAATGAGAGGGAATAAATTTAAGACCGTG
TTTACAGTTAcaacagttttgaaaatttacttAAGGTCCTTCTTATCTAT
ATGGATGTGGAAAATATGCGAGGAGAAAATGTTTGTTTAACCGTTTAGCA
TAACTTTGATAAaacattgacttttttttgccattttgaatAAAAGTTGT
CATTGAATTGAGTACTTCATTTGATTCATTCTTGACATTGAGGTGACACG
GGAAAGAGGAAATCAAATGATACATAGATTTTCGGTGCATGGTTGACGAG
CTATGAAGGAAGACACTAGACAAAGAACGAAGAGTGGAGCCAAACCTGAT
GTTCGCCTTGCTTTGATTGGCGCACCGAAAGTCGGGAAATCAGGTAAATA
GATTTTTTAAGCAGGAACATTGAGAATTCAAAGTTTACAGTCAAATCTTA
AACCAGTTGATATCTAATAGTACAAGATTTCAAAACACCACGATATCGGA
CATTTAAGAGGCAAATTTCGCAGAGAGAATATGATTCGAGTCGGCTAAAA
TTCAGAAGTCCTGGTCATAAAAGATCAACAACGCATCCAatttaaagaaa
tataaaaaaatctttaacctccctagatttttaaaattacTATTCACAAC
ATCTTACACTGTAGGAATATAAAGTTTAACGGTGACGTAATAAAAACATG
GTACACATATACGAAGATCGTCAAAATACAACGTATTGTAATATAAACAC
ATGAAAGGCCATGTTTTCATTGAAAGTCTTTATTTTTGAATCATCGAGGG
TCCTTGTTAGTTGCCATAACATAATACCTCTTCTCGAAACATAGCAAGTT
GAATGGAAAGCCAAGAAAAGCACTCAAGTAATTCCAACGCAACGAATAGT
TTTTGGCANAACGAAGAGTGGAGCCAAACCTGATGTTCGCCTTGCTTTGA
TTGGCGCACCGAAAGTCGGGAAATCAGGTAAATAGATTTTTTAAGCAGGA
ACATTGAGAATTCAAAGTTTACAGTCAAATCTTAAACCAGTTGATATCTA
ATAGTACAAGATTTCAAAACACCACGATATCGGACATTTAAGAGGCAAAT
TTCGCAGAGAGAATATGATTCGAGTCGGCTAAAATTCAGAAGTCCTGGTC
ATAAAAGATCAACAACGCATCCAatttaaagaaatataaaaaaatcttta
acctccctagatttttaaaattacTATTCACAACATCTTACACTGTAGGA
ATATAAAGTTTAACGGTGACGTAATAAAAACATGGTACACATATACGAAG
ATCGTCAAAATACAACGTATTGTAATATAAACACATGAAAGGCCATGTTT
TCATTGAAAGTCTTTATTTTTGAATCATCGAGGGTCCTTGTTAGTTGCCA
TAACATAATACCTCTTCTCGAAACATAGCAAGTTGAATGGAAAGCCAAGA
AAGGCACTCAAGTAATTCCAACGCAACGAATAGTTTTTGGCAGCGTTACT
TGCAATCCATAATAAACGAACATGGAGTGAATTACCTACTGTAAAAGAAA
AGGTTAAAGTTGTAGGGTATCATCAAGGCCTAGCTAACCGTTCTGATAAA
TCAGGCTTATAGGATTCATTGATTAATATTTCCGGGGCATATTCCTTCTC
CctgtcaaaaaatgaaaattttcttttttagcaaTCAGTGTTCGATTTCT
GACGCGAAGATTCATCCACGAATACCAGAGAAGCGTGGAACATACTTATC
GTAGAAACCTGGAGTTTGGAAATGAAGTCATTGAATATGTGTTAAGGGAT
TCATCAGGAACGGTAAGACTTTGATGGAgtaatacacaggttgcaaaatt
aaaattctgaagacaaatcacgcttttactcgaaatttccatgtgcttgt
tacatgacatttatttctgattggttcgaatttattgacactaataaagt
aaTTAACTGTTGTAATTAAAAGTTGTAAAGCAAgcaacatgggaataaaa
tcacgggaactttttcgagtaatcacatgttttgactgcaccgatataat
tttgcaacctgtgtattgaaTATaaatgttttatcaaaataattttctat
cCAATTTTTTGTCGTGTTGAAACTGGAAGTATTTAAGTGACTTCCCACTT
CTGATTTAAAAGAGAATGAGACTTTTATCAAACGATTAAATGAGAGTTAA
AGAACGTTTACAAGCTTCTTAGTAAAACAAATTATGGACACAAAGAAGTC
TGGTAATGAGCATGAGTCAGATTAGAAGATAAAAGAATCTCCGCCCTTGA
ACTTTATGAATCAGAGTGGTTTaggttttttgattttgtatggTTTTGAA
ATGAAGTTAATTTTCAATTACCAAAGACTAGTCtgcacaatagacagctc
caggcttttaggccttgtTTACCTTAGGAGAAGTTTTAcactcgaaacga
aggaagatgaCGTAGCCTACCAAAGACCCGCTAATCCAACATTTTAAATC
CTTTCCTTTTTTCCAGGTCGAGAATAACAATAATTTGATCCACTGGGCGT
CGTGTGTCGCAGTGATTTACTCCATCTCAGACAAGAACAGTTTCAATGTT
GCATCTGCACTCCTCGAAGAAATCAACTTCATTTACAACagtaaaaatta
caaacaaaatggACCAAAAAGTATCGGCCTTATTGGTAACAAGAAAGACT
TAAACCATCTGCGGGAAGTTTCCTTGAGAGAAGCTAAAGAATTGGCGAAT
AAACATGGCGCGAATTTCTGGGAAGTCTCCGCTTCTGATGATTTTCATTC
AACTCATGCACCTTTAAACTCCATGGTTGTTGAAGCttatttgaataatt
tgacATTGAAAACTGTAAAAGGGGGACTGGTTTCTCCTGGATCACATGTG
AAAGGTCTCGATGAAAACATCAGAAACGAATTAATTTCGAATCAATCGAT
TGAAAGCGATGAAGGTGGCTTACAACCATCTACACCATTCAAAATTCCCA
TGAATCCTTTCGACTTTTCAAGCGAGAAACGAAAATCGTTTAAAGATCGC
AAGAAATTAGATTTGAAGTTAAACCAACTAAAAAGTGAAAGTCTAAAGAA
GATCTCAATGGGAAGGACTTCTTTGGATAACGACAACTTTGACTCCAATA
ACAATACAAATAGTAATTCACCAGATACTATGAGTCTGAGCACAGACAAT
GACGAACCAATTCGGACAAGTAGTTGGTCAAAGAAGGACAAAAAACGAAA
GGAGAAATCGAAAGAATCAAAAGAACTGAAGGAActtaaagaaatgaaat
taaCAGAAATGAATGGAGTTGGACACGAAGaaatagaacaaaagaaaagt
aattTACAAAGATGTCACAGTCTCACTGACctcaaaagtttagaaaaagA
ACACCATTGCGAGGGAGTTGATTCAGAAAACAAGGAAGACATTGAACCTC
ACGATGTAGAGNTGAGGGAGTTGATTCAGAGAACAAGGAAGACATTGAAC
CTCACGATGTAGAGGATGACAAACTAACTGATTTGATTTCACCTTCCAGT
AAAATTACCAGCAGTTTCAGCAGGTTGTCTTCATACTCTGCAGGCTCTGG
CGTCCCCATTAAAAGTCCACGACCCCGCAAAGAGCGACGCAAAACCACTG
GCTTGACCATGACTCCCGAACATATAGAAACAGATCTCGCGTCCCCCCGA
AGCCCCGAACCTCCTCGAGAACAATCCAGATTCAAACGAGCCGAAA

Coding sequence (CDS) from alignment at scaffold_49:280831..284626+

>TCONS_00068771 ID=TCONS_00068771|Name=TCONS_00068771|organism=Clytia hemisphaerica|type=CDS|length=5592bp|location=Sequence derived from alignment at scaffold_49:280831..284626+ (Clytia hemisphaerica)
ATGAAGGAAGACACTAGACAAAGAACGAAGAGTGGAGCCAAACCTGATGT
TCGCCTTGCTTTGATTGGCGCACCGAAAGTCGGGAAATCAGcaaTCAGTG
TTCGATTTCTGACGCGAAGATTCATCCACGAATACCAGAGAAGCGTGGAA
CATACTTATCGTAGAAACCTGGAGTTTGGAAATGAAGTCATTGAATATGT
GTTAAGGGATTCATCAGGAACGGTCGAGAATAACAATAATTTGATCCACT
GGGCGTCGTGTGTCGCAGTGATTTACTCCATCTCAGACAAGAACAGTTTC
AATGTTGCATCTGCACTCCTCGAAGAAATCAACTTCATTTACAACagtaa
aaattacaaacaaaatggACCAAAAAGTATCGGCCTTATTGGTAACAAGA
AAGACTTAAACCATCTGCGGGAAGTTTCCTTGAGAGAAGCTAAAGAATTG
GCGAATAAACATGGCGCGAATTTCTGGGAAGTCTCCGCTTCTGATGATTT
TCATTCAACTCATGCACCTTTAAACTCCATGGTTGTTGAAGCttatttga
ataatttgacATTGAAAACTGTAAAAGGGGGACTGGTTTCTCCTGGATCA
CATGTGAAAGGTCTCGATGAAAACATCAGAAACGAATTAATTTCGAATCA
ATCGATTGAAAGCGATGAAGGTGGCTTACAACCATCTACACCATTCAAAA
TTCCCATGAATCCTTTCGACTTTTCAAGCGAGAAACGAAAATCGTTTAAA
GATCGCAAGAAATTAGATTTGAAGTTAAACCAACTAAAAAGTGAAAGTCT
AAAGAAGATCTCAATGGGAAGGACTTCTTTGGATAACGACAACTTTGACT
CCAATAACAATACAAATAGTAATTCACCAGATACTATGAGTCTGAGCACA
GACAATGACGAACCAATTCGGACAAGTAGTTGGTCAAAGAAGGACAAAAA
ACGAAAGGAGAAATCGAAAGAATCAAAAGAACTGAAGGAActtaaagaaa
tgaaattaaCAGAAATGAATGGAGTTGGACACGAAGaaatagaacaaaag
aaaagtaattTACAAAGATGTCACAGTCTCACTGACctcaaaagtttaga
aaaagAACACCATTGCGAGGGAGTTGATTCAGAAAACAAGGAAGACATTG
AACCTCACGATGTAGAGGATGACAAACTAACTGATTTGATTTCACCTTCC
AGTAAAATTACCAGCAGTTTCAGCAGGTTGTCTTCATACTCTGCAGGCTC
TGGCGTCCCCATTAAAAGTCCACGACCCCGCAAAGAGCGACGCAAAACCA
CTGGCTTGACCATGACTCCCGAACATATAGAAACAGATCTCGCGTCCCCC
CGAAGCCCCGAACCTCCTCGAGAACAATCCAGATTCAAACGAGCCGAAAT
GAAGGAAGACACTAGACAAAGAACGAAGAGTGGAGCCAAACCTGATGTTC
GCCTTGCTTTGATTGGCGCACCGAAAGTCGGGAAATCAGcaaTCAGTGTT
CGATTTCTGACGCGAAGATTCATCCACGAATACCAGAGAAGCGTGGAACA
TACTTATCGTAGAAACCTGGAGTTTGGAAATGAAGTCATTGAATATGTGT
TAAGGGATTCATCAGGAACGGTCGAGAATAACAATAATTTGATCCACTGG
GCGTCGTGTGTCGCAGTGATTTACTCCATCTCAGACAAGAACAGTTTCAA
TGTTGCATCTGCACTCCTCGAAGAAATCAACTTCATTTACAACagtaaaa
attacaaacaaaatggACCAAAAAGTATCGGCCTTATTGGTAACAAGAAA
GACTTAAACCATCTGCGGGAAGTTTCCTTGAGAGAAGCTAAAGAATTGGC
GAATAAACATGGCGCGAATTTCTGGGAAGTCTCCGCTTCTGATGATTTTC
ATTCAACTCATGCACCTTTAAACTCCATGGTTGTTGAAGCttatttgaat
aatttgacATTGAAAACTGTAAAAGGGGGACTGGTTTCTCCTGGATCACA
TGTGAAAGGTCTCGATGAAAACATCAGAAACGAATTAATTTCGAATCAAT
CGATTGAAAGCGATGAAGGTGGCTTACAACCATCTACACCATTCAAAATT
CCCATGAATCCTTTCGACTTTTCAAGCGAGAAACGAAAATCGTTTAAAGA
TCGCAAGAAATTAGATTTGAAGTTAAACCAACTAAAAAGTGAAAGTCTAA
AGAAGATCTCAATGGGAAGGACTTCTTTGGATAACGACAACTTTGACTCC
AATAACAATACAAATAGTAATTCACCAGATACTATGAGTCTGAGCACAGA
CAATGACGAACCAATTCGGACAAGTAGTTGGTCAAAGAAGGACAAAAAAC
GAAAGGAGAAATCGAAAGAATCAAAAGAACTGAAGGAActtaaagaaatg
aaattaaCAGAAATGAATGGAGTTGGACACGAAGaaatagaacaaaagaa
aagtaattTACAAAGATGTCACAGTCTCACTGACctcaaaagtttagaaa
aagAACACCATTGCGAGGGAGTTGATTCAGAAAACAAGGAAGACATTGAA
CCTCACGATGTAGAGGATGACAAACTAACTGATTTGATTTCACCTTCCAG
TAAAATTACCAGCAGTTTCAGCAGGTTGTCTTCATACTCTGCAGGCTCTG
GCGTCCCCATTAAAAGTCCACGACCCCGCAAAGAGCGACGCAAAACCACT
GGCTTGACCATGACTCCCGAACATATAGAAACAGATCTCGCGTCCCCCCG
AAGCCCCGAACCTCCTCGAGAACAATCCAGATTCAAACGAGCCGAAATGA
AGGAAGACACTAGACAAAGAACGAAGAGTGGAGCCAAACCTGATGTTCGC
CTTGCTTTGATTGGCGCACCGAAAGTCGGGAAATCAGcaaTCAGTGTTCG
ATTTCTGACGCGAAGATTCATCCACGAATACCAGAGAAGCGTGGAACATA
CTTATCGTAGAAACCTGGAGTTTGGAAATGAAGTCATTGAATATGTGTTA
AGGGATTCATCAGGAACGGTCGAGAATAACAATAATTTGATCCACTGGGC
GTCGTGTGTCGCAGTGATTTACTCCATCTCAGACAAGAACAGTTTCAATG
TTGCATCTGCACTCCTCGAAGAAATCAACTTCATTTACAACagtaaaaat
tacaaacaaaatggACCAAAAAGTATCGGCCTTATTGGTAACAAGAAAGA
CTTAAACCATCTGCGGGAAGTTTCCTTGAGAGAAGCTAAAGAATTGGCGA
ATAAACATGGCGCGAATTTCTGGGAAGTCTCCGCTTCTGATGATTTTCAT
TCAACTCATGCACCTTTAAACTCCATGGTTGTTGAAGCttatttgaataa
tttgacATTGAAAACTGTAAAAGGGGGACTGGTTTCTCCTGGATCACATG
TGAAAGGTCTCGATGAAAACATCAGAAACGAATTAATTTCGAATCAATCG
ATTGAAAGCGATGAAGGTGGCTTACAACCATCTACACCATTCAAAATTCC
CATGAATCCTTTCGACTTTTCAAGCGAGAAACGAAAATCGTTTAAAGATC
GCAAGAAATTAGATTTGAAGTTAAACCAACTAAAAAGTGAAAGTCTAAAG
AAGATCTCAATGGGAAGGACTTCTTTGGATAACGACAACTTTGACTCCAA
TAACAATACAAATAGTAATTCACCAGATACTATGAGTCTGAGCACAGACA
ATGACGAACCAATTCGGACAAGTAGTTGGTCAAAGAAGGACAAAAAACGA
AAGGAGAAATCGAAAGAATCAAAAGAACTGAAGGAActtaaagaaatgaa
attaaCAGAAATGAATGGAGTTGGACACGAAGaaatagaacaaaagaaaa
gtaattTACAAAGATGTCACAGTCTCACTGACctcaaaagtttagaaaaa
gAACACCATTGCGAGGGAGTTGATTCAGAAAACAAGGAAGACATTGAACC
TCACGATGTAGAGGATGACAAACTAACTGATTTGATTTCACCTTCCAGTA
AAATTACCAGCAGTTTCAGCAGGTTGTCTTCATACTCTGCAGGCTCTGGC
GTCCCCATTAAAAGTCCACGACCCCGCAAAGAGCGACGCAAAACCACTGG
CTTGACCATGACTCCCGAACATATAGAAACAGATCTCGCGTCCCCCCGAA
GCCCCGAACCTCCTCGAGAACAATCCAGATTCAAACGAGCCGAAATGAAG
GAAGACACTAGACAAAGAACGAAGAGTGGAGCCAAACCTGATGTTCGCCT
TGCTTTGATTGGCGCACCGAAAGTCGGGAAATCAGcaaTCAGTGTTCGAT
TTCTGACGCGAAGATTCATCCACGAATACCAGAGAAGCGTGGAACATACT
TATCGTAGAAACCTGGAGTTTGGAAATGAAGTCATTGAATATGTGTTAAG
GGATTCATCAGGAACGGTCGAGAATAACAATAATTTGATCCACTGGGCGT
CGTGTGTCGCAGTGATTTACTCCATCTCAGACAAGAACAGTTTCAATGTT
GCATCTGCACTCCTCGAAGAAATCAACTTCATTTACAACagtaaaaatta
caaacaaaatggACCAAAAAGTATCGGCCTTATTGGTAACAAGAAAGACT
TAAACCATCTGCGGGAAGTTTCCTTGAGAGAAGCTAAAGAATTGGCGAAT
AAACATGGCGCGAATTTCTGGGAAGTCTCCGCTTCTGATGATTTTCATTC
AACTCATGCACCTTTAAACTCCATGGTTGTTGAAGCttatttgaataatt
tgacATTGAAAACTGTAAAAGGGGGACTGGTTTCTCCTGGATCACATGTG
AAAGGTCTCGATGAAAACATCAGAAACGAATTAATTTCGAATCAATCGAT
TGAAAGCGATGAAGGTGGCTTACAACCATCTACACCATTCAAAATTCCCA
TGAATCCTTTCGACTTTTCAAGCGAGAAACGAAAATCGTTTAAAGATCGC
AAGAAATTAGATTTGAAGTTAAACCAACTAAAAAGTGAAAGTCTAAAGAA
GATCTCAATGGGAAGGACTTCTTTGGATAACGACAACTTTGACTCCAATA
ACAATACAAATAGTAATTCACCAGATACTATGAGTCTGAGCACAGACAAT
GACGAACCAATTCGGACAAGTAGTTGGTCAAAGAAGGACAAAAAACGAAA
GGAGAAATCGAAAGAATCAAAAGAACTGAAGGAActtaaagaaatgaaat
taaCAGAAATGAATGGAGTTGGACACGAAGaaatagaacaaaagaaaagt
aattTACAAAGATGTCACAGTCTCACTGACctcaaaagtttagaaaaagA
ACACCATTGCGAGGGAGTTGATTCAGAAAACAAGGAAGACATTGAACCTC
ACGATGTAGAGGATGACAAACTAACTGATTTGATTTCACCTTCCAGTAAA
ATTACCAGCAGTTTCAGCAGGTTGTCTTCATACTCTGCAGGCTCTGGCGT
CCCCATTAAAAGTCCACGACCCCGCAAAGAGCGACGCAAAACCACTGGCT
TGACCATGACTCCCGAACATATAGAAACAGATCTCGCGTCCCCCCGAAGC
CCCGAACCTCCTCGAGAACAATCCAGATTCAAACGAGCCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042885XLOC_042885Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068771-exon-scaffold_49-1491911889:280831..281273TCONS_00068771-exon-scaffold_49-1491911889:280831..281273Clytia hemisphaericaexon
TCONS_00068771-exon-scaffold_49-1510915933:280831..281273TCONS_00068771-exon-scaffold_49-1510915933:280831..281273Clytia hemisphaericaexon
TCONS_00068771-exon-scaffold_49-1575043694:280831..281273TCONS_00068771-exon-scaffold_49-1575043694:280831..281273Clytia hemisphaericaexon
TCONS_00068771-exon-scaffold_49-1491911889:282562..282692TCONS_00068771-exon-scaffold_49-1491911889:282562..282692Clytia hemisphaericaexon
TCONS_00068771-exon-scaffold_49-1510915933:282562..282692TCONS_00068771-exon-scaffold_49-1510915933:282562..282692Clytia hemisphaericaexon
TCONS_00068771-exon-scaffold_49-1575043694:282562..282692TCONS_00068771-exon-scaffold_49-1575043694:282562..282692Clytia hemisphaericaexon
TCONS_00068771-exon-scaffold_49-1491911889:283397..284320TCONS_00068771-exon-scaffold_49-1491911889:283397..284320Clytia hemisphaericaexon
TCONS_00068771-exon-scaffold_49-1510915933:283397..284320TCONS_00068771-exon-scaffold_49-1510915933:283397..284320Clytia hemisphaericaexon
TCONS_00068771-exon-scaffold_49-1575043694:283397..284320TCONS_00068771-exon-scaffold_49-1575043694:283397..284320Clytia hemisphaericaexon
TCONS_00068771-exon-scaffold_49-1491911889:284374..284626TCONS_00068771-exon-scaffold_49-1491911889:284374..284626Clytia hemisphaericaexon
TCONS_00068771-exon-scaffold_49-1510915933:284374..284626TCONS_00068771-exon-scaffold_49-1510915933:284374..284626Clytia hemisphaericaexon
TCONS_00068771-exon-scaffold_49-1575043694:284374..284626TCONS_00068771-exon-scaffold_49-1575043694:284374..284626Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068771-proteinTCONS_00068771-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:280831..284626 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0369437	0.0337635	0	0	0	0.0338012	0.0499467	4.81446	7.85071	0.763099	2.57863	0.250692	0.450363	12.3461	14.8145	1.28772	0.832637	0.0518668	0.0477511	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00068771 vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.071e-23
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 2 
Query:  395 PDVRLALIGAPKVGKSAISVRFLTRRFIHEYQRSVEHTYRRNLEFGNEVIEYVLRDSSG---TVENNNNLIHWASCVAVIYSISDKNSFNVASALLEEINFIYNSKNYKQNGPKSIGLIGNKKDLNHLREVSLREAKELANKHGANFWEVSAS 844
             +V+LA+ G   VGKSA+ VRFLT+RFI EY  ++E TYR      +EV+   + D++G   T++   ++  W     ++Y I+D+ SF     L   ++ I   KN       ++ L+GNK DL+H R+VS  E ++LA +    F+E SA 
Sbjct:    5 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHM-RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV------TLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSAC 150
The following BLAST results are available for this feature:
BLAST of TCONS_00068771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RERG4.071e-2335.95Ras-related and estrogen-regulated growth inhibito... [more]
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